LOC110520166 (LOC106586272)


Basic Information

Item Value
gene id LOC110520166
gene name LOC106586272
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 51276921 ~ 51389582 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597293.2
ACACCACAGCTGTAAAGAGGTTAGTTATTTCAGAGATTTTCTTTCTGATAATAAATGTCAGGTTTGACTAAAAACCGTCTCTGACAATACACTCCACTTCGTGTTTTCGCACCCGCTCTGTGCATCTGAGCACATAGCGGTCTCCTCTCCAGTCCTCAGCTTTTCGACTTTCTACGGTAATGTATCCTCCCCGACGTCGCTTTCTTAGTGAAGTTGAGTGAACACGTTGAGGAGCCCGCTCTCTGTTGGATCCATGTGGCTTTGTGGCTTTACCTGGACTCACTACACACATTCTCTTTTCTGCCGCAACGCGGGACTCTCAACCACCGTTGGTGGCAAAATAAACAGACGTTGATTGAGAAGGAAGTGTTGATGCACAGTTGTAGAAAAGTGTCAACCACCAAACGTTGAGTTGTTAGAGGCTACCTGCGTATGCACTGCAGTGGAGTTCCTCTCTAAACTGGAATCAGCAGAGGATAAAAGAAGGATTAATCACAGAAGTGCACGATGCTGAGATACCAGACGGTCCTTTGGACTTTCTCATTGCTGTCTGTTGCAGCTGGATCCGATTTTAAAGCACGTAACTGCAGTGGGGTTAAAGAAGCTTCAATTGCAAAAGGCTTCAGCTTTGAAAATGTTCCTCTCCAACAAATGTCAGGTGACCATCTCCGGGTATGTCCCCAGGGCAATACCTGTTGCAGTTCAGAAATGGAGGACAAGTTTGGTCAACAAAGCAAGCTGGAGTTAGAGAACCTGGTTGATGAAACTAGTAAAGAATTGCGAAGCACCTTCGTCTCCAGACATAAAAAGTTTGATGAGTTCTTCCTGGAGCTGCTGGAGAACACGGAGAAGTCCCTGAACGAGATGTTCGTGCGGACCTATGGCAAGCCTTACATGCAGAACTCAGAAGTCTTCCAGAACCTGTTTGCCGAGCTGAAGCGCTACTACACTGGGGGCAACGTGAACCTGGAGGAGATGCTCAACGACTTCTGGTCGCGGCTGCTGGAGCGCATGTTCACGCTGCTCAACTCCCAATACGTCATCACAGATGACTATCTGGAGTGCATCAGCAAGTACACAGACCAGCTCAAACCCTTTGGAGACGTGCCCAGGAAGCTCAAGGCTCAGGTTACAAGGGCCTTCATTGCAGCCCGCACATTCGTCCAGGGGCTCTCGGTTGGTCGAGAGGTGGCCAACAGGGTGTCCAAGGTGAGCAGCACCCCAGCGTGTATCCGAGCACTGACCAAGATGATGTACTGCCCATACTGCCAAGCCATGCCCTCCGTGAAGCCCTGTAACAACTATTGTCTGAACGTCATGAAGGGCTGTCTCGCCAACCAGGCCGATCTGGACCCAGAGTGGAACCAGTACATCGatGCCATGTTACTGGTGGCACAGAGGCTGGAGGGACCCTTCAACATCGAGTCTGTCATGGAACCCATTGATGTCAAAATTTCGGAGGCCATCATGAATATGCAAGATAACAGTGTCCAAGTCTCCTACAGGATTTTTCAAGGCTGCGGCCAACCAAAGCCCTCAGGAATGGGCGGCAGGTCTACCCGGGGCGTCTCGGATGTGTTCAACGCCCGCTTCAGGCCCTACAGCCCAGAGGAGCGGCCCACCACTGCAGCTGGCACCAGCCTGGACAGACTGGTGATTGACATCAAGGAGAAACTGAAGCTGTTCAAGAAGTTGTGGTCCAACCTGCCTGAGGACATCTGCCAGCCACACAGGGTGACAGCAGGGAATGCCACCGATGACGACCAGTGTTGGAATGGGCACACCAAGGGCAGGTATTTCCCAGAGGTTATGAAAGACGGATTGACCAATCAGGTGAATAACCCGGAGGTGGGCGTGGACATCACCAGGCCTGACACGTTCATTCGCCAGCAGATCATGGCTCTGAGAGTGATGACAAACAAGTTAAAAAATGCCTACAATGGCAATGATATCTACTTTCAAGACTCAAGTGATGAGGGCAGTGGCTCAGGCAGTGGCAGCGGCTGCACGGAGGCCTGCGTCACTGAGTTTGACTTTGCCAGCACCGAGGCACCGGTGGTGGGAGCGGACCGGAGCGGGAGCGGCCCGGTGGAGGATTCAGCAGCAGCCACACACCCTGCCCCCTCAGCAGCCCTGCTGGCCAGCCTGGCCCTCTCAGTCCTGGCACTGCACAGGCTATGGAGATAATGCTGGGGGAACTCACCCAACGTGGACAGAAGGATCTCTCTCTACGGTGTGTTTTTCTACTCAAGCAGACTGGAGCTACAGTCAAGCAGACAGTATTCAGGCAGCCTTGGCCTCTCGGATAGGTAGAGGGGTCTTCTCTGCTCTGGAGACAGCAGTCATGCATCCTGgatcccccttcctcctcctaaAGTGTCTGGTCATTGGTGCCATCCTTAGGCAGGACACATGACTCCCGTCACTCCAAAATAGAAACAGATGATCCACCATCAAACATTGTTCAAGAAGCCCAAAGGAATTACTTTTTTCTGGCATAAGGCAGATGTTATTAGGTCTCCATGAGAAAAAGTAATTGCACTTTTGGTCTATTTTTTTTATGCTATAGAAGATGATTATGTTGTACCACTGTGAGATTGTGGAGAGGGTGCACCAAGAGGTGATCAGAAGATAGAACTAGAACATGTCTACTATGGTGTAAGGTGATCTCAGCTGGCAGGTATTTTACTTGTTGACAGGTCAGCAGTGCATTTCTTCATTCATAAAACAAACCCGAATTCCCCAAAATCCCAGAAAAATATCATAGATACAGTATGGCTTTCACATTAATTGTTGATTTCGTCCTTGGTTCTTCTGCTTTAAATATTATTGAATATTTTTCTACATTGACAGAAATACATACATATGATACATATGAAACATGTTTAATGTTAATCAGGTAAAGTAAAATATTGTACAACtcaaacactatatatacaaaagtatgtggacatcccttcaaattagtggatttggctgtttcagccacatccgtcgctgacaggtgtataaaatcgagcacaccgccatgcaatctcaatagacaaacattggcagtagaatggccttactgaagagctcagtttgtcaaatttctgccctgctagagctgcctcggtcaactgtaagttctgtgattgtgaagtggaaacgtctacaAGCAACAAccgctcagccgtgaagtggtaggccacacaagtacAGAGAACGGGACAGCTGACTGCTGAAGCGCAtagtgcgtaaaaatcatctgtccacagttgcagcactcactaccgagttccaaactgcctctggaagcaatattAGCTcaagaactgttagtcgggagcttcatgaagtgggtttccatggccgagcagccacacacaagactaagatcaccatgctcaatacTAAGCGTTGGCTGGAGCAGTGTAAAGCCCGCCcctcattggactctggagcagtgtaaaGCCCGCCcctcattggactctggagcagtgtaaaGCTCGCCcctcattggactctggagcagtggaaacgcgttctctggagtgatgaatcacgcttcacaatctggcagttcgacagacgaatctgggtttggcagatgccagtagaacgctacctgcccaaatgcatagtgccaactgtaaatttGGCGGAGGATAAATATTGGTCTGgggcagtttttcatggttccggctaggccccttagttccagtgaagagaaatcttaaacctacagcatacaatgacattctaggcgattctgtgcttccgtctttatggcaacagtttggggaaggccctttcctgttcagcatgtcaatgcccccgtgcacaaagcaaagttcatacagaaatggtttgtcgagatcggtgtggaagaacttgactgtcctgcacagGGTCCGGGCCTCAACCCTATCGAactcctttgggatgaattggtgaaataaatcaaatgtacattggaacgccgactgcgagccaggcctaatcgcccaccatcagtgcccaacctcactaatgctcttgtgactgaatggaagcaaaggggggaccaactccatattaaagcccgGAGATgttgagatgtttgacgagcagatgtccacatacttttgtagtgtGTCTAATATAAGTTTTTACCATTTACTGCATTCTGTTGTTTTGAGTGCAGATGTTATCATACCACAAAGAACCTCATCAGAATGATTGCTTTAAGTTATGTTATATGGTGTTATCCACTATGTCAGATTTTCCCATAATTGGAGAGAATAAGAGAATGTCCAACCATTTAGAAACGATCGGTCTGCATTTATTGGTATGAGGTTATTGAAAGTTTACATCATTTTTTCCCCTTATATTTCTTATATCCTCAGATATGAACCTTTACCTGATAACTCAGGATTGAGATGTTTTTCATGTTAATTCAACTGGTTTTGAACTGCACATGCTTAACTTCATGAGCATGTGTTCATCTCATGTTTTAACTACCTGCAATGTGATGTCTAACCTCCCATCTGTCATTATGAAGGCAAATTTAGATACAGTAAGACACCGTGTTCTAACAGTCCTAGCAAGCACTTCTTATGAACTCAACTGAGGCCCTCAGATTTCAACATTTCCAACATTTATTGACAAGATCCTTCATTCATCCGTTTTATGGAAGATACATGTGCAGTTAAAGTTAATGCACTTAAATATGTCTAATGTCAAGTGAGCTAATGTCGACATCTGTATTTAACTGTAACCACTAATGTCTTTATAATTCACAAGTAGATCTGTCGAAATTACCGTTCACATAACATTGATTCAAACATTGATTCAAACCAGTTATTCATTCATTATTAAAAACAAGAGAGAACGAATGAGGATCAAGATGAGGTGCCAAATTGTAGTAGGTAAAAACATAGCACATTGAAGACAAAAAAATGCCAAAGGCAAAAAAAAGCCCCCTTCATTTATCTCTGGCGCCTGAGTGGTTCTGTGTGCAGAGACAGG
>XM_021597292.2
CACACCACAGCTGTAAAGAGGTTAGTTATTTCAGAGATTTTCTTTCTGATAATAAATGTCAGGTTTGACTAAAAACCGTCTCTGACAATACACTCCACTTCGTGTTTTCGCACCCGCTCTGTGCATCTGAGCACATAGCGGTCTCCTCTCCAGTCCTCAGCTTTTCGACTTTCTACGGTAATGTATCCTCCCCGACGTCGCTTTCTTAGTGAAGTTGAGTGAACACGTTGAGGAGCCCGCTCTCTGTTGGATCCATGTGGCTTTGTGGCTTTACCTGGACTCACTACACACATTCTCTTTTCTGCCGCAACGCGGGACTCTCAACCACCGTTGGTGGCAAAATAAACAGACGTTGATTGAGAAGGAAGTGTTGATGCACAGTTGTAGAAAAGTGTCAACCACCAAACGTTGAGTTGTTAGAGGCTACCTGCGTATGCACTGCAGTGGAGTTCCTCTCTAAACTGGAATCAGCAGAGGATAAAAGAAGGATTAATCACAGAAGTGCACGATGCTGAGATACCAGACGGTCCTTTGGACTTTCTCATTGCTGTCTGTTGCAGCTGGATCCGATTTTAAAGCACGTAACTGCAGTGGGGTTAAAGAAGCTTCAATTGCAAAAGGCTTCAGCTTTGAAAATGTTCCTCTCCAACAAATGTCAGGTGACCATCTCCGGGTATGTCCCCAGGGCAATACCTGTTGCAGTTCAGAAATGGAGGACAAGTTTGGTCAACAAAGCAAGCTGGAGTTAGAGAACCTGGTTGATGAAACTAGTAAAGAATTGCGAAGCACCTTCGTCTCCAGACATAAAAAGTTTGATGAGTTCTTCCTGGAGCTGCTGGAGAACACGGAGAAGTCCCTGAACGAGATGTTCGTGCGGACCTATGGCAAGCCTTACATGCAGAACTCAGAAGTCTTCCAGAACCTGTTTGCCGAGCTGAAGCGCTACTACACTGGGGGCAACGTGAACCTGGAGGAGATGCTCAACGACTTCTGGTCGCGGCTGCTGGAGCGCATGTTCACGCTGCTCAACTCCCAATACGTCATCACAGATGACTATCTGGAGTGCATCAGCAAGTACACAGACCAGCTCAAACCCTTTGGAGACGTGCCCAGGAAGCTCAAGGCTCAGGTTACAAGGGCCTTCATTGCAGCCCGCACATTCGTCCAGGGGCTCTCGGTTGGTCGAGAGGTGGCCAACAGGGTGTCCAAGGTGAGCAGCACCCCAGCGTGTATCCGAGCACTGACCAAGATGATGTACTGCCCATACTGCCAAGCCATGCCCTCCGTGAAGCCCTGTAACAACTATTGTCTGAACGTCATGAAGGGCTGTCTCGCCAACCAGGCCGATCTGGACCCAGAGTGGAACCAGTACATCGatGCCATGTTACTGGTGGCACAGAGGCTGGAGGGACCCTTCAACATCGAGTCTGTCATGGAACCCATTGATGTCAAAATTTCGGAGGCCATCATGAATATGCAAGATAACAGTGTCCAAGTCTCCTACAGGATTTTTCAAGGCTGCGGCCAACCAAAGCCCTCAGGAATGGGCGGCAGGTCTACCCGGGGCGTCTCGGATGTGTTCAACGCCCGCTTCAGGCCCTACAGCCCAGAGGAGCGGCCCACCACTGCAGCTGGCACCAGCCTGGACAGACTGAGGACTGTCTGGAGTGCAATGCAACACAGTGTGATTGACATCAAGGAGAAACTGAAGCTGTTCAAGAAGTTGTGGTCCAACCTGCCTGAGGACATCTGCCAGCCACACAGGGTGACAGCAGGGAATGCCACCGATGACGACCAGTGTTGGAATGGGCACACCAAGGGCAGGTATTTCCCAGAGGTTATGAAAGACGGATTGACCAATCAGGTGAATAACCCGGAGGTGGGCGTGGACATCACCAGGCCTGACACGTTCATTCGCCAGCAGATCATGGCTCTGAGAGTGATGACAAACAAGTTAAAAAATGCCTACAATGGCAATGATATCTACTTTCAAGACTCAAGTGATGAGGGCAGTGGCTCAGGCAGTGGCAGCGGCTGCACGGAGGCCTGCGTCACTGAGTTTGACTTTGCCAGCACCGAGGCACCGGTGGTGGGAGCGGACCGGAGCGGGAGCGGCCCGGTGGAGGATTCAGCAGCAGCCACACACCCTGCCCCCTCAGCAGCCCTGCTGGCCAGCCTGGCCCTCTCAGTCCTGGCACTGCACAGGCTATGGAGATAATGCTGGGGGAACTCACCCAACGTGGACAGAAGGATCTCTCTCTACGGTGTGTTTTTCTACTCAAGCAGACTGGAGCTACAGTCAAGCAGACAGTATTCAGGCAGCCTTGGCCTCTCGGATAGGTAGAGGGGTCTTCTCTGCTCTGGAGACAGCAGTCATGCATCCTGgatcccccttcctcctcctaaAGTGTCTGGTCATTGGTGCCATCCTTAGGCAGGACACATGACTCCCGTCACTCCAAAATAGAAACAGATGATCCACCATCAAACATTGTTCAAGAAGCCCAAAGGAATTACTTTTTTCTGGCATAAGGCAGATGTTATTAGGTCTCCATGAGAAAAAGTAATTGCACTTTTGGTCTATTTTTTTTATGCTATAGAAGATGATTATGTTGTACCACTGTGAGATTGTGGAGAGGGTGCACCAAGAGGTGATCAGAAGATAGAACTAGAACATGTCTACTATGGTGTAAGGTGATCTCAGCTGGCAGGTATTTTACTTGTTGACAGGTCAGCAGTGCATTTCTTCATTCATAAAACAAACCCGAATTCCCCAAAATCCCAGAAAAATATCATAGATACAGTATGGCTTTCACATTAATTGTTGATTTCGTCCTTGGTTCTTCTGCTTTAAATATTATTGAATATTTTTCTACATTGACAGAAATACATACATATGATACATATGAAACATGTTTAATGTTAATCAGGTAAAGTAAAATATTGTACAACtcaaacactatatatacaaaagtatgtggacatcccttcaaattagtggatttggctgtttcagccacatccgtcgctgacaggtgtataaaatcgagcacaccgccatgcaatctcaatagacaaacattggcagtagaatggccttactgaagagctcagtttgtcaaatttctgccctgctagagctgcctcggtcaactgtaagttctgtgattgtgaagtggaaacgtctacaAGCAACAAccgctcagccgtgaagtggtaggccacacaagtacAGAGAACGGGACAGCTGACTGCTGAAGCGCAtagtgcgtaaaaatcatctgtccacagttgcagcactcactaccgagttccaaactgcctctggaagcaatattAGCTcaagaactgttagtcgggagcttcatgaagtgggtttccatggccgagcagccacacacaagactaagatcaccatgctcaatacTAAGCGTTGGCTGGAGCAGTGTAAAGCCCGCCcctcattggactctggagcagtgtaaaGCCCGCCcctcattggactctggagcagtgtaaaGCTCGCCcctcattggactctggagcagtggaaacgcgttctctggagtgatgaatcacgcttcacaatctggcagttcgacagacgaatctgggtttggcagatgccagtagaacgctacctgcccaaatgcatagtgccaactgtaaatttGGCGGAGGATAAATATTGGTCTGgggcagtttttcatggttccggctaggccccttagttccagtgaagagaaatcttaaacctacagcatacaatgacattctaggcgattctgtgcttccgtctttatggcaacagtttggggaaggccctttcctgttcagcatgtcaatgcccccgtgcacaaagcaaagttcatacagaaatggtttgtcgagatcggtgtggaagaacttgactgtcctgcacagGGTCCGGGCCTCAACCCTATCGAactcctttgggatgaattggtgaaataaatcaaatgtacattggaacgccgactgcgagccaggcctaatcgcccaccatcagtgcccaacctcactaatgctcttgtgactgaatggaagcaaaggggggaccaactccatattaaagcccgGAGATgttgagatgtttgacgagcagatgtccacatacttttgtagtgtGTCTAATATAAGTTTTTACCATTTACTGCATTCTGTTGTTTTGAGTGCAGATGTTATCATACCACAAAGAACCTCATCAGAATGATTGCTTTAAGTTATGTTATATGGTGTTATCCACTATGTCAGATTTTCCCATAATTGGAGAGAATAAGAGAATGTCCAACCATTTAGAAACGATCGGTCTGCATTTATTGGTATGAGGTTATTGAAAGTTTACATCATTTTTTCCCCTTATATTTCTTATATCCTCAGATATGAACCTTTACCTGATAACTCAGGATTGAGATGTTTTTCATGTTAATTCAACTGGTTTTGAACTGCACATGCTTAACTTCATGAGCATGTGTTCATCTCATGTTTTAACTACCTGCAATGTGATGTCTAACCTCCCATCTGTCATTATGAAGGCAAATTTAGATACAGTAAGACACCGTGTTCTAACAGTCCTAGCAAGCACTTCTTATGAACTCAACTGAGGCCCTCAGATTTCAACATTTCCAACATTTATTGACAAGATCCTTCATTCATCCGTTTTATGGAAGATACATGTGCAGTTAAAGTTAATGCACTTAAATATGTCTAATGTCAAGTGAGCTAATGTCGACATCTGTATTTAACTGTAACCACTAATGTCTTTATAATTCACAAGTAGATCTGTCGAAATTACCGTTCACATAACATTGATTCAAACATTGATTCAAACCAGTTATTCATTCATTATTAAAAACAAGAGAGAACGAATGAGGATCAAGATGAGGTGCCAAATTGTAGTAGGTAAAAACATAGCACATTGAAGACAAAAAAATGCCAAAGGCAAAAAAAAGCCCCCTTCATTTATCTCTGGCGCCTGAGTGGTTCTGTGTGCAGAGACAGG

Function

NR:

description
glypican-6-like isoform X1

GO: NA

KEGG:

id description
K08112 GPC6; glypican 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597293.2 False 4992 mRNA 0.47 9 51276921 51389581
XM_021597292.2 True 5023 mRNA 0.47 10 51276921 51389582

Neighbor

gene id symbol gene type direction distance location
cldn10b LOC106586096 coding downstream 141460 51130633 ~ 51135461 (-)
LOC110520160 LOC106586095 coding downstream 146517 51126600 ~ 51130404 (-)
dnajc3a dnajc3 coding downstream 150616 51111845 ~ 51126305 (-)
LOC110504222 LOC106586266 coding downstream 217701 50960859 ~ 51059220 (-)
LOC110520155 LOC106586265 coding downstream 325893 50912625 ~ 50951028 (-)
LOC110504232 LOC106586097 coding upstream 74629 51464211 ~ 51470676 (-)
fgf9 NA coding upstream 82566 51471899 ~ 51478510 (-)
LOC110520170 il1rl1 coding upstream 161115 51550697 ~ 51559339 (-)
il1rl1 il1rl1 coding upstream 207351 51596933 ~ 51619476 (-)
LOC110520172 LOC106586277 coding upstream 241207 51630789 ~ 51680912 (-)
G270105 dct non-coding downstream 9330 51195332 ~ 51267591 (-)
G270098 NA non-coding downstream 95379 51181089 ~ 51181542 (-)
G270091 NA non-coding downstream 105402 51170209 ~ 51171519 (-)
G270067 NA non-coding downstream 129633 51147017 ~ 51147288 (-)
G270057 NA non-coding downstream 139431 51136926 ~ 51137490 (-)
G270243 NA non-coding upstream 1454 51391036 ~ 51391343 (-)
G270248 NA non-coding upstream 4831 51394413 ~ 51394635 (-)
G270254 NA non-coding upstream 8849 51398431 ~ 51398647 (-)
G270267 NA non-coding upstream 17013 51406595 ~ 51406812 (-)
G270286 LOC100194703 non-coding upstream 29852 51419434 ~ 51419773 (-)
LOC110520139 LOC106586251 other downstream 834049 50440201 ~ 50442930 (-)
LOC110520121 LOC106581751 other downstream 1375383 49895327 ~ 49901575 (-)
LOC110520119 NA other downstream 1405276 49867187 ~ 49871681 (-)
LOC110520112 LOC106586230 other downstream 1709447 49563841 ~ 49608114 (-)
LOC110520182 NA other upstream 1318601 52693956 ~ 52708816 (-)
G272713 LOC106586324 other upstream 1860344 53249926 ~ 53251084 (-)
G274344 LOC106586294 other upstream 3290336 54679918 ~ 54682805 (-)

Expression


Co-expression Network