LOC110504232 (LOC106586097)


Basic Information

Item Value
gene id LOC110504232
gene name LOC106586097
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 51464211 ~ 51470676 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583046.2
ATGGCAGACCAAGAGAACACTGAGGAGCTAGCAGCTCCTGCTGCTGAGGAGAGCACAGCCACTGTCACGGCCACTGAGGCCGAGCAGACAGACACATGGAGGATAGAGGTGGTGTCTGTGACTGATGACGACCTTCCGACGGTCGATACCCCGACCACATTGAATGTCAGTCCCCTCGACAGCCCCAATGACACCCCTCTACCCGACACTGCCAAACCTGAACCCACCACTGAGCCCAAAGCCCCGCCCCCTGCCCCACCAAGTCCAGCCATGCCAGTCACTAAGGTCCAGCCTTTCATGAATGAGGAGAAGACATGGTGTGGCCGGTTGGTGGCTCGCAGGATGGAGCTGCTGATCGGAGCATCGGTCCTCATGGTGGTTATTCTCACGCTGGGCATTGGGTTGGGAGTGGGTCTTAGCTGTGTGGGTAAGTTCCGCTGTGGTACGTCTTCTCGCTGCATCAGTGGCTCAGCGCAGTGTGACGGGGTGATGGACTGTGAGAATGGGGAGGACGAGCTTAGCTGTGTGCGTTTGAGTGGAAAGAGTTCAGTGCTCCAGGTGCTGAGTGGAGGTGTGTGGAGGACTGTCTGCTCTGAAGACTGGAACTCTGCTCTGGGCCTTTCTGCCTGCAAGCAGCTGGGCTACTCCAGGTATGTGGAGTcccgctccctccccctctctgctatAGAGCAGGACTTCCAGCATAACCTGGTGTCAATCAACCTGAGCCAGTCGGGCCAACAGGCCATCAAGATTCACAACGCCACCAGCCTCAGtaAGACTCAATGCAGCTCAGGGACGGTGACCACAATCAAATGCCTGGAGTGCGGCTCCAGACCCCAGTTCAGCAGTCGTATTGTTGGGGGTAACGTATCAGCACTGGGCCAGTTCCCCTGGCAGGTGAGCCTACACTTCCAGAGTGAACACTTGTGTGGAGGCTCTGTCGTAGCAGACAGCTGGATACTGACAGCTGCACACTGCGTGTATGGGTTTGCGTTCCCCTCACTGTGGGCAGTGCATGTAGGGTTGACAGAGCAGCCGGTGAATGGGGCTCAGGCTCTGGCAGTACAGAAGATTATTTACCATGGCCGCTACCGGCCCAAAGCTCTAGACTATGACATCGCTCTGATGAAGCTGGCTGAGCCACTCACCTTTAACGGTCTAGTGGAGCCCATCTGCCTACCTAACTTTGGGGAGGACTTTGAGGATGGGACTATGTGTTGGATTTCAGGCTGGGGGGCCACTTCAGATGGGGGTGACGCTAGTGATTCGTTGCTCTCTGCCCGGGTCCCGCTCATCTCCTCTAAGGCGTGCAGCACGCCAGGCGTCTACCAGGGCTACATCTCCCCCGGGATGATCTGTGCAGGTTACctggagggaggaacagactccTGCCAGGGAGACAGCGGGGGACCTCTGGCATGTGAGGACTCAGTGTGGAAATTGGTGGGGGCCACTAGCTGGGGCCAGGGCTGTGCTGATAGGAACAAGCCTGGGGTCTACACCCGCGTCACCCAATCCCTGAAGTGGATCCACCAACAGATGGAGAAAGAAGAGGAGCTGAACCCCTCGGAAGTTAGTACGGACAACTGAATTAGTAGAGAAGTCTTTTTATACATGCTACTTCTATCAAAAGTTTATAATATTGTACATTGCCTGGGACTTAAGAGTACTGCCAACGAACCAAATGCTGAATGTGTAGCACAGGCCAGGGTTGGATGGCCTAACAGTGACAGCAGCCCTCACAGGACAGGCAAGGGCAAACCACCCCCCAGAACAAGACACCGTAACCTTATAGACATGTTGGATGCTCAGAAAAGGCTAGAAAAGCACCTGGATCAGAGTACGgtagagtatagtacaataaACCTTTGTCAGTTTGTATCCTACATGGCTACAACCAAGCACAATGAAGGCAGTGGCACATTCAACAGTAGAGGTAAGGCATTGTTTATTCCAAAATAACAAGCTCTAAGGCAAACAGAGAAAAGTGAACAACAGTAGAAAACAAGCGACAGCGATGGTAGAGATGTGAGAGACAGAGTGTGCAGCTGAGACCCACCTGAACCCGAACCAGAAACACTCAGTGGGGATCTAAGTGCATCTCAGGTTGTCTGAATGACATCACAAGATAAGAGGGAAAATTTGATGGAAACTATACAGTACGTTGGGGCAGCTTTTCCCAACAACAAAGGCCCTGACTTGGGCAATGATATTAGAATAGAAGATGGAGAGTTCAGAAAACATTCTTAAAACTGTCCCTAGATCAGCCAGAGTACAAGTCCTCCAGTCCTTCTCAAACAGAGGACCAGCCTGTGAGGACCAGACCTGTGAGGTCTGAGGATCCCAACTGCTCTCTCCACTTTTAATACAATCATATGTATGTGTACATAAATAAAGATTAACGTGTGTAAAATATAGTTTTTAGACTGTGATCTACTTTGTACTGTTGATCTGACTGCCTAAGTACTATTTCAGTTCCTCGTGATTGTG

Function

NR:

description
transmembrane protease serine 3-like

GO: NA

KEGG:

id description
K09634 TMPRSS3; transmembrane protease serine 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583046.2 True 2493 mRNA 0.52 13 51464211 51470676

Neighbor

gene id symbol gene type direction distance location
LOC110520166 LOC106586272 coding downstream 74629 51276921 ~ 51389582 (-)
cldn10b LOC106586096 coding downstream 328750 51130633 ~ 51135461 (-)
LOC110520160 LOC106586095 coding downstream 333807 51126600 ~ 51130404 (-)
dnajc3a dnajc3 coding downstream 337906 51111845 ~ 51126305 (-)
LOC110504222 LOC106586266 coding downstream 404991 50960859 ~ 51059220 (-)
fgf9 NA coding upstream 1472 51471899 ~ 51478510 (-)
LOC110520170 il1rl1 coding upstream 80021 51550697 ~ 51559339 (-)
il1rl1 il1rl1 coding upstream 126257 51596933 ~ 51619476 (-)
LOC110520172 LOC106586277 coding upstream 160113 51630789 ~ 51680912 (-)
LOC100135875 LOC100135875 coding upstream 218159 51688835 ~ 51734299 (-)
G270582 NA non-coding downstream 8245 51455767 ~ 51455966 (-)
G270571 NA non-coding downstream 22634 51441320 ~ 51441577 (-)
G270286 LOC100194703 non-coding downstream 44438 51419434 ~ 51419773 (-)
G270267 NA non-coding downstream 57399 51406595 ~ 51406812 (-)
G270254 NA non-coding downstream 65564 51398431 ~ 51398647 (-)
G270611 LOC106586273 non-coding upstream 19918 51490594 ~ 51498737 (-)
G270567 NA non-coding upstream 58773 51529449 ~ 51532544 (-)
G270621 NA non-coding upstream 66971 51537647 ~ 51538128 (-)
G270622 NA non-coding upstream 67660 51538336 ~ 51538639 (-)
LOC110520139 LOC106586251 other downstream 1021339 50440201 ~ 50442930 (-)
LOC110520121 LOC106581751 other downstream 1562673 49895327 ~ 49901575 (-)
LOC110520119 NA other downstream 1592566 49867187 ~ 49871681 (-)
LOC110520112 LOC106586230 other downstream 1896737 49563841 ~ 49608114 (-)
LOC110520182 NA other upstream 1237507 52693956 ~ 52708816 (-)
G272713 LOC106586324 other upstream 1779250 53249926 ~ 53251084 (-)
G274344 LOC106586294 other upstream 3209242 54679918 ~ 54682805 (-)

Expression


Co-expression Network