LOC110520170 (il1rl1)


Basic Information

Item Value
gene id LOC110520170
gene name il1rl1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 51550697 ~ 51559339 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597298.2
AGTTTACACTGCTCATTTTGCTCATATTTAGCAGATTCCAGTTCCAGATATACACCTACTGTGTAAATTCTACTCAGATGCTACTTTAGACTGAGGGAGGATTGCTGCGTAGTGGATGCAAGTTCCTGTTTTTCAGAAAATGTGCTCCTTCACATTCAGGTTGGTGGATGGTGGTCTCATGTTCCTGCTCCTCAGTTTGACTAGGATTTCTGCCCAGAGAGAAATGTCCTTAAACACCACTACAATAAGTCATTACACAGAGTCCCCATGTCAACTATTTGACAAGTATGAAACTACTGTGACAGAGGGGGAGGCCCTTAGTTTGCCAGCCTACCGTGACCTGAGTGAGTTGGTTTGGGCCAGCGTGACTGAGTTTACCTGGTACAGAAACAGAACCCAAGAGCTCCCGTCCTCTGAGGAAGAGCGTGTGCATCATCATGGACCGGtgctcttcttcctccctcttttaATCAACGACTCTGATCAGTACTACACCTACTGGAGAAAGGGAGCAGACACCTGCCTCATTTTTGTGACAGAGGTGATTGTGGTCAAAGCCCAACCGTTCGATCATTCAGTCCTGTTTAACGATATCTCAGAGTCAGCAGAAAACATCGCTATCCCATGTCCTGACCCCGTGGAAAAACTATGCCAAGATGGAAAAGAAAACTTAGTCTGGTATAAGAATttcagtctcattccaaacgagTCTGAGAGAAATCTGTGGGTGTATGGCGCCTCCAAAGCAGACGAGGGCATCTAtacgtgtgtgtgcacgtgggAGCACAATGGGACGGTTCTCAACACTTCTGCATCCAGGAGACTAAAGATCCAAGCTCCCTCTGCCTCGCATCCTCCTCAGATCAACCTGCCTATAAACGGAAGCACAGAGACCACTGACCTGTACACCACTAAGAAGTTGAGGTGTGAAGCGTTTTGTGGGCAGAACATTGAAGACAACTGTCACGTGTGGTGGGAGATAAATGGAGTGAAAGTGCGCTTGCAGCAGCAAGGCTACACGGTGAACACCACCAGCGAGGTGGAGGTCTCTTCAATGCGGAGAATCTTCACAGCTATCCTGACCATAAACACAGTGACTATGAGGGACCTCCAGTCAAAGTTCACATGTGTTGCAATGAACGACCAGAAATGGTATTATGCAGTAGTTACTCTCAAGCTAAGAGGGTTTATGTTTATGGGTCTATGTGTGGTGCTACTGCTCTTCTTCTTGCTAGCTGCTGTGGCTGTCAAAGTGTTTGACATCGATCTGGCGCTCCTCTTCCGTGGAGTTTTCAAATGCTGTGGTCGATCTGAGGATGGGAAGGTCTATGATGCTTACGTTGTCTACCAGATGGATGGCTTAGACCAGGAAAGGGAGGAGAAAGTGTATCACTTTGTGAGCATTGTTCTGCCCACTGTCCTGGAGCAGAAGTGTGGCTTTAGACTCTTCATCCACGGCAGAGACGACTTACCTGGGGAAGACCGCATGGAGTTGGTGGAGGCCTGCATGCAGCTGAGCAGGAGGCTGATTGTCATCCTGACCCCCAGCTCAAGCACATTGTTAGGCTCAGGAGGTCAAGGGTCATGTGGCCAATGGGGCTACACGTCTTTGTTGACCACAGCGGAGGACTATGAATGTCAGGTGGGGCTCTACCAGGCTCTGGTCCACAGTGAGATGAACGTTATCCTCATCCAGCTGGGGGACATGGGGGAGGGTGGctacacacacctgtcccctgGCCTGCAGCACCTGGTCCGCAAGAGTGCCCCCTTAATGTGGCATGAGGGAAGGCGTGGGTCGATGCTGCCCAACTCAAGCTTCTGGAAGAGGGTGCGTTACATGATGCCTTGGCCGCGCTCGACTAGTTTTGACAACCAGTTAATATGACTGTTCTATGTGAACAATCAGGTCTGAGGACTTGAAGTGCGTGTGGAGGTCTGGGTTCTCTGAAAATCCTTATTCCATTCATAGAAATATCATTAATTATTCCAGTGCTGTGCAGAGATATACACAGGTTAGATGAGAACGTCACAAAAACAATGTGTACAATGTGGCAGAAGGccgtgtgttgttgtgattctggatggctagcaacaatgacaagaaactgccatgtggggaatagTAAGTGGCTAATTTCAGCtagttttatcttgttcttgataccatgttttgtttttaggtattttgactgatgtcacgtctatgctaatatggcaaaatGTGCTTCCTtactaaccaacaactgtaacgatgtatttgagagagAACAAGTGTTCAATGTGCAACttttttatgttttcaataaacattggagactaaacatagtttacat
>TU307463
tttaATCAACGACTCTGATCAGTACTACACCTACTGGAGAAAGGGAGCAGACACCTGCCTCATTTTTGTGACAGAGGTGATTGTGGTCAAAGCCCAACCGTTCGATCATTCAGTCCTGTTTAACGATATCTCAGAGTCAGCAGAAAACATCGCTATCCCATGTCCTGACCCCGTGGAAAAACTATGCCAAGATGGAAAAGAAAACTTAGTCTGGTATAAGAATttcagtctcattccaaacgagTCTGAGAGAAATCTGTGGGTGTATGGCGCCTCCAAAGCAGACGAGGGCATCTAtacgtgtgtgtgcacgtgggAGCACAATGGGACGGTTCTCAACACTTCTGCATCCAGGAGACTAAAGATCCAAGCTCCCTCTGCCTCGCATCCTCCTCAGATCAACCTGCCTATAAACGGAAGCACAGAGACCACTGACCTGTACACCACTAAGAAGTTGAGGTGTGAAGCGTTTTGTGGGCAGAACATTGAAGACAACTGTCACGTGTGGTGGGAGATAAATGGAGTGAAAGTGCGCTTGCAGCAGCAAGGCTACACGGTG
>TU307464
ATATCCCTATGTTCCAGGAGAAAGGGAGCAGACACCTGCCTCATTTTTGTGACAGAGGTGATTGTGGTCAAAGCCCAACCGTTCGATCATTCAGTCCTGTTTAACGATATCTCAGAGTCAGCAGAAAACATCGCTATCCCATGTCCTGACCCCGTGGAAAAACTATGCCAAGATGGAAAAGAAAACTTAGTCTGGTATAAGAATttcagtctcattccaaacgagTCTGAGAGAAATCTGTGGGTGTATGGCGCCTCCAAAGCAGACGAGGGCATCTAtacgtgtgtgtgcacgtgggAGCACAATGGGACGGTTCTCAACACTTCTGCATCCAGGAGACTAAAGATCCAAGCTCCCTCTGCCTCGCATCCTCCTCAGATCAACCTGCCTATAAACGGAAGCACAGAGACCACTGACCTGTACACCACTAAGAAGTTGAGGTGTGAAGCGTTTTGTGGGCAGAACATTGAAGACAACTGTCACGTGTGGTGGGAGATAAATGGAGTGAAAGTGCGCTTGCAGCAGCAAGGCTACACGGTG

Function

symbol description
il1rl1 Predicted to act upstream of or within signal transduction. Human ortholog(s) of this gene implicated in asthma and coronary artery disease. Orthologous to human IL1RL1 (interleukin 1 receptor like 1).

NR:

description
interleukin-1 receptor-like 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597298.2 False 2336 mRNA 0.47 12 51550697 51559339
TU307463 False 559 lncRNA 0.48 5 51552787 51554680
TU307464 True 540 lncRNA 0.49 4 51552787 51553935

Neighbor

gene id symbol gene type direction distance location
fgf9 NA coding downstream 72187 51471899 ~ 51478510 (-)
LOC110504232 LOC106586097 coding downstream 80021 51464211 ~ 51470676 (-)
LOC110520166 LOC106586272 coding downstream 161115 51276921 ~ 51389582 (-)
cldn10b LOC106586096 coding downstream 415236 51130633 ~ 51135461 (-)
LOC110520160 LOC106586095 coding downstream 420293 51126600 ~ 51130404 (-)
il1rl1 il1rl1 coding upstream 37594 51596933 ~ 51619476 (-)
LOC110520172 LOC106586277 coding upstream 71450 51630789 ~ 51680912 (-)
LOC100135875 LOC100135875 coding upstream 129496 51688835 ~ 51734299 (-)
LOC110520176 LOC106586280 coding upstream 258225 51817564 ~ 51844042 (-)
LOC110520175 LOC106586279 coding upstream 396995 51956334 ~ 52075676 (-)
G270627 NA non-coding downstream 3861 51546561 ~ 51546836 (-)
G270626 NA non-coding downstream 4277 51545686 ~ 51546420 (-)
G270625 NA non-coding downstream 7384 51542803 ~ 51543313 (-)
G270622 NA non-coding downstream 12058 51538336 ~ 51538639 (-)
G270621 NA non-coding downstream 12569 51537647 ~ 51538128 (-)
G270682 NA non-coding upstream 106186 51665525 ~ 51668106 (-)
G270730 LOC106586278 non-coding upstream 199805 51759144 ~ 51760413 (-)
G270732 NA non-coding upstream 211283 51770622 ~ 51771489 (-)
G270806 NA non-coding upstream 299715 51859054 ~ 51859385 (-)
LOC110520139 LOC106586251 other downstream 1107825 50440201 ~ 50442930 (-)
LOC110520121 LOC106581751 other downstream 1649159 49895327 ~ 49901575 (-)
LOC110520119 NA other downstream 1679052 49867187 ~ 49871681 (-)
LOC110520182 NA other upstream 1148844 52693956 ~ 52708816 (-)
G272713 LOC106586324 other upstream 1690587 53249926 ~ 53251084 (-)
G274344 LOC106586294 other upstream 3120579 54679918 ~ 54682805 (-)
LOC110520227 plekhm3 other upstream 3544155 55068639 ~ 55122013 (-)

Expression


Co-expression Network