LOC110520169 (il1rl1)


Basic Information

Item Value
gene id LOC110520169
gene name il1rl1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 51573980 ~ 51582567 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597297.2
TTCTACTCAGATGCTACTTTAGACTGAGGGAGGATTGCTGCGTAGTGGATGCAAGTTCCTGTTTTGCAGAAAATGTGCTCCTTCACATTCAGGTTGGTGGATGGTGGTCTCATGTTCCTGCTCCTCAGTTTGACTAGGATTTCTGCCCAGAGAGAAATGTCCTtaaaccccactacaataggtcATTACACAGAGTCCCCATGTCAACTATTTGAAAAGTATGAAACTACTGTGACAGAGGGGGAGGCCCTTAGTTTGCCAGCCTACTATGACCTGAGTGAGTTGGTTTGGGCCAGCGTGACTGAGTTTACCTGGTACAGAAACAGAACCCAAGAGCTCTCGTCCTCTGAGGAAGAGCGTGTGCATCATCATGGACCGGTGCTCTTCTTCCTCCCCCTTTTAATCAACGACTCTGATCAGTACTACACCTACTGGAAAAAGGGAGCAGACACCTGCCTAATTTCTGTGACAGAGGTGATTGTGGTCAAAGCCCAACCGTTCGATCATTCAGTCCTGTTTGAAGATATCTCAGAGTCAGCAGAAAACATCGCTATCCCATGTCCTGACCCCGTGGAAAAACTATGCCAAGATGGAAAAGAAAACTTAGTCTGGTATAAGAATttcagtctcattccaaacgagTCTGAGAGAAATCTGTGGGTGTATGGCGCCTCCAAAGCAGACGAGGGCATCTAtacgtgtgtgtgcacgtgggAGCACAATGGGACGGTTCTCAACACTTCTGCATCCAGGAGACTAAAGATCCAAGCTCCCTCTGCCTCGCATCCTCCTCAGATCAACCTGCCTATAAACGGAAGCACAGAGACCACTGACCTGTACACCACTAAGAAGTTGAGGTGTGAAGCGTTTTGTGGGCAGAACATTGAAGACAACTGTCACGTGTGGTGGGAGATAAATGGAGTGAAAGTGCGCTCGCAGCAGCAAGGCTACTCTGTGAACACCACCAGCGAGGTGGAGGTATCTTCAATGCGAAGTATCTTCACAGCTATCCTGATCATAAACACAGTGACTATGAGGGACCTCCAGTCAAAGTTCACATGTGTTGCAATGAACGACCAGAAATGGGATTGTGCAGTGGTTACTCTCAAGCTAAGAGGGTTTATGTTTATGGGTCTATGTGTGGTGCTACTGCTCTTCGTCTTGCTAGCTGCTGTGGCTGTTAAAGTCTTTGACATCGATCTGGCGCTGCTCTTCCGTGGAGTTTTCAAATGCTGTGGTCGATCTGAGGATGGGAAGGTCTATGATGCTTACGTTGTCTACCAGATGGATGGCTTAGATCAGGAAAGGGAGGAGAAAGTGTATCACTTTGTGAGCAGCGTTCTGCCCACTGTCCTGGAGCAGAAGTGTGGCTTTAGACTCTTCATCCACGGCAGAGACGACTTACCTGGGGAAGACCGCATGGAGTTGGTGGAGGCCTGCATACGGCTGAGCAGGAGGCTGATTGTCATCCTGACCCCCAGCTCAAGCACATGGTCAGACTCAGAAGGTCAAAGCTCATGTGGCCAATGGGGCTGCTCGTCTTCGCTGACCACAGCAGAAGACTATGACTGTCAGGTGGGGCTCTACCAGGCTCTGGTCCACAGTGAGATGAGCGTCATCCTCATCCAGCTGGGGGATATGGGGGAGGGTGGctacacacacctgtcccctgGCCTGCAGCACCTGGTCCGCAAGAGTGCCCCCTTAATATGGCATGAGGGAAGGCGTGGGTCGATGCTGCCCAACTCAAGCTTCTGGAAGAGGGTGCGTTACATGATGCCTTGGCCGCGCTCGACTAGTTTTGACAACCAGTTAATATGACTGTTCTATGTGAACAATCAGGTCTGAGGACTTGAAGTGCGGTTGGAGGTCTGGGTTCTCTGAAAATCCTTATTCCATTCATAGAAATATCATTAATTATTCCAGTGCTGTGCAGAGATTTACACAGGTTAGCTGAGAACGTCACAAAAACGATGTGTACAATGTGGCAGAAGGccgtgtgttgttgtgattctggatggctagcaacaatgacaagaaactgccatgtggggaatagTAACTGGTTAATTTCAGCtagttttatcttgttcttgatTCCATGTCTTGTTTTTAGGTATTTTGACTGTcacgtctatgctaatatggcaaaatGTGCTTGCTtactaaccaacaactgtaacaatgtagttgagagacaacaagtgttCATTGTGCAActtttatgttttcaataaacattggagactaaatatagtttacatgttgtcaacaatctaaaccAACCCGTTCTGTTTGCTCCATATCTGTGCACACTtctgttttgttgctaaacaaccaacctgtcTATGGTGCCATAGTGACATATTGACTAAGGTCCTAAATCAATTGAAATGTACAACCTTTGAGAAACTTGTC
>TU307177
TCCAGATATACACCTACTGTGTAAATTCTACTCAGATGCTACTTTAGACTGAGGGAGGATTGCTGCGTAGTGGATGCAAGTTCCTGTTTTGCAGAAAATGTGCTCCTTCACATTCAGGTTGGTGGATGGTGGTCTCATGTTCCTGCTCCTCAGTTTGACTAGGATTTCTGCCCAGAGAGAAATGTCCTtaaaccccactacaataggtcATTACACAGAGTCCCCATGTCAACTATTTGAAAAGTATGAAACTACTGTGACAGAGGGGGAGGCCCTTAGTTTGCCAGCCTACTATGACCTGAGTGAGTTGGTTTGGGCCAGCGTGACTGAGTTTACCTGGTACAGAAACAGAACCCAAGAGCTCTCGTCCTCTGAGGAAGAGCGTGTGCATCATCATGGACCGGTGCTCTTCTTCCTCCCCCTTTTAATCAACGACTCTGATCAGTACTACAC
>TU307174
ATCTCAGAGTCAGCAGAAAACATCGCTATCCCATGTCCTGACCCCGTGGAAAAACTATGCCAAGATGGAAAAGAAAACTTAGTCTGGTATAAGAATttcagtctcattccaaacgagTCTGAGAGAAATCTGTGGGTGTATGGCGCCTCCAAAGCAGACGAGGGCATCTAtacgtgtgtgtgcacgtgggAGCACAATGGGACGGTTCTCAACACTTCTGCATCCAGGAGACTAAAGATCCAAGCTCCCTCTGCCTCGCATCCTCCTCAGATCAACCTGCCTATAAACGGAAGCACAGAGACCACTGACCTGTACACCACTAAGAAGTTGAGGTGTGAAGCGTTTTGTGGGCAGAACATTGAAGACAACTGTCACGTGTGGTGGGAGATAAATGGAGTGAAAGTGCGCTCGCAGCAGCAAGGC

Function

symbol description
il1rl1 Predicted to act upstream of or within signal transduction. Human ortholog(s) of this gene implicated in asthma and coronary artery disease. Orthologous to human IL1RL1 (interleukin 1 receptor like 1).

NR:

description
interleukin-1 receptor-like 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597297.2 False 2418 mRNA 0.47 12 51574005 51582567
TU307177 False 453 TUCP 0.47 4 51573980 51578683
TU307174 True 423 lncRNA 0.49 4 51579330 51580358

Neighbor

gene id symbol gene type direction distance location
LOC110520168 LOC106586274 coding upstream 41371 51504521 ~ 51532634 (+)
pdxka LOC106586273 coding upstream 73916 51490352 ~ 51500089 (+)
LOC110520165 LOC106586271 coding upstream 297594 51267073 ~ 51276411 (+)
LOC110520164 LOC100137092 coding upstream 311789 51258792 ~ 51262216 (+)
LOC110520163 LOC106586270 coding upstream 343174 51228485 ~ 51230831 (+)
LOC110520171 LOC106586099 coding downstream 38787 51621354 ~ 51624586 (+)
LOC110520174 LOC106586278 coding downstream 176689 51759256 ~ 51766986 (+)
LOC110520177 LOC106586282 coding downstream 798364 52380931 ~ 52442609 (+)
LOC110520178 LOC106582420 coding downstream 926208 52508775 ~ 52567291 (+)
LOC110520179 arl4c coding downstream 1002444 52585011 ~ 52587048 (+)
G270369 NA non-coding upstream 24068 51549729 ~ 51549937 (+)
G270363 NA non-coding upstream 35877 51537647 ~ 51538128 (+)
G270298 NA non-coding upstream 37630 51534387 ~ 51536375 (+)
G270337 NA non-coding upstream 100846 51472954 ~ 51473159 (+)
G270336 NA non-coding upstream 101060 51472586 ~ 51472945 (+)
G270451 NA non-coding downstream 100611 51683178 ~ 51683426 (+)
G270497 NA non-coding downstream 170119 51752686 ~ 51752919 (+)
G270483 NA non-coding downstream 185556 51768123 ~ 51769068 (+)
G270486 NA non-coding downstream 186902 51769469 ~ 51770130 (+)
G270484 NA non-coding downstream 188043 51770610 ~ 51771617 (+)
G269291 rap2a other upstream 673728 50898589 ~ 50900277 (+)
LOC110520146 ino80d other upstream 969189 50601983 ~ 50618761 (+)
hoxd3a hoxd3 other upstream 1390979 50162278 ~ 50184327 (+)
G267529 NA other upstream 1718503 49836617 ~ 49855502 (+)
G267381 NA other upstream 2018167 49554498 ~ 49555838 (+)
acvr2aa LOC106586327 other downstream 1584385 53124656 ~ 53172428 (+)
LOC110520187 LOC106586325 other downstream 1638860 53174264 ~ 53235027 (+)
LOC110520190 LOC106586322 other downstream 1708763 53291284 ~ 53339392 (+)
G272965 NA other downstream 2066258 53648825 ~ 53652431 (+)
G273004 LOC106586313 other downstream 2074894 53657461 ~ 53658683 (+)
LOC110520169 il1rl1 other upstream 647 51573980 ~ 51582567 (+)

Expression


Co-expression Network