LOC110520171 (LOC106586099)


Basic Information

Item Value
gene id LOC110520171
gene name LOC106586099
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 51621354 ~ 51624586 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597299.2
ACCAGCATGTCAAAACGAAAGATAATGGAAAGGATATTAGGGTTCAATGAGTATACTTCAGGGAAGTCCaacaaagggagaaagagagagaaagaggtactAAATGGCTTCCAGAGCAAAGAGACAGAATGGGGACCAGCGTACTCTCCCTGAGCTGAGAATCATCCTCCTGGGGAGGGATTGGCTGGAGAAGAGTCAAACAGGAAACACCATCCTGGACAGGAAGCTGTTTGACACCAGGAGGGACGTGGAGATGTGTGTGAGGAGACAGAGTCTAGTGGATGGCCGGCAGGTCACTGTGGTCAACACATCAGACAGATGCATCCAGTACTCTGTGCAGGACCCTCTCCTTGTCCACCGTAACATAGAAGCCAGCATATCCATGTGTCAACCAGGTCCCCATGCCTTCCTCATGGTCATCCCTTTGAACTCACGCAAAGGCAGGGAATGGACAGTAGAGGGCCCCCTCAAGCTTCTCAACCACATACTCTGGAGACACATGATGGTAGTGTTTACCCAATGTGAGAAACTCAGGGGAATGTCACTAGAGGAACACATAGCGAGACATGGGTTTCTCCAGGAGATGGTGGAGAAGTGTGGGCATAGGTACCATGCTTTAAACACTAGGGCCAACACATGGGGCAATGATGTCACTCAGGTCCCAGAGCTGCTGAGGAAGATAGATGAAATGGTGGCAGGTGGTCCTGCTTATGTTGTCATGAATGAGAGGTTTTCAATGGCAATTGAAGTTAAGAGgatggcagaggaggagagggcgaGTTTGAGACGGATAAAGGTTCAGAGACAGAGGGAAACACTCAGATCTCTGCTCAGGGGTAAGTCCCACCAACTATCTGAAGCTGAACAGAGAATCATGATAGTGGGACCTCGATTGGTTGGGAAGAGCTCATCTGGAAATAGCATCCTGGGTAAGAAAACCTTTGAGGCTGGACACACGACTTCACACAGTGTGAAAAGACAGGGTGACATCACCGTAAGACAAGTCACAGTGGTGGACACACCCGGGTGGCATGGGCGATACTGCACTGAGGACACTCCTGAAGTAGTAAAAATTGAGATTACCCAAGGTGTATCTCTTTGTGCTCCCGAGCCGCACGCTGTCCTCGTGGTCGTACGCTGTGACGAAACATTCACAGGGACAGACAGGTCAAGAGCAGAAGAAAAACTAAATCTGATTGGTCGGTCAGTCTGGAGTCAAGCTATAGTGTTGTTCACCTGGGGAGACAAGCTTGGCGACACAGCCATCGAACTTCACATCGAGAGATGGCCTGCCCTTCAGTGGCTTGTCGATAAATGTAGCAACAGGTACCATGTCTTTGATAACACAAGCCCGGCTGGAGGCCCTCAGGTCACAGAACTTCTGGAGAAAATTGAGGAGACAGTGATGGGAAACGATGGTGAACACTGGCTCAAAATGTACTGGGAGCTCAGGGAGAGCAAAAAGAAGTTGACAAAAAGCTCTGAGGAGATTGGGAGAAgactagaggaggaagagagggagaatgacaAGCTTAAAAGGATGattgaagaggaagagaggaaagtagAGCAAATAGATAAGCGATATGAGGAGAAAGATGGAATGTTGAAAGAGATGGAGCAGAGAAACACAATGAGAGAAAAGGAGATAGAAGACAGACGTATGGAGTATGAAAGAGAGAAGGAATCCCTCAAACAAATGTGtgtggagaaagacagagcatTGGATCAGATGGAGAGGAAGCATAAAAGAGAAAGTAAAGAACTGAGAGACAAGATAGAAAACCTGGAAAAGAGAAAGTCTGAAAGAGAAGAGGAGTTGAATGCCATGATTGTTGAGACACAGAAGGAGTTACAAGAGAATAAACAAAAGTATGAAATGAAAGAGGTGGAGATATCAATGCTAGAGAGAGATGTAGCGGAGCTTAAGCAGCAGAATAAAGTGAGAGAAGACATGATCAACCATGTGAAGATTAAGGAGGATCGAATACAACTGCACAGAGTGGAATCTACAGCACCCGCGGACATGGTGGACAACTCTTATCTAAAGACTCAACATAGAAATTTGAGAAAGACACAGATGTTGTCACAGAAGGATGGTGAGAGGCAGAGGGACACAGCAGGACGAGAGCAGAGAGTtggagatgaacagagagaagcACCATGGTTGAAGATTGGGGCAGCAGTACTGGGGGCAGTGGTTGGGGCCATGGCTGGCTCTGTGAGGGCACCACTAAGTGCAGCCACAGGGACTACTATAGGGGCTGCAGCAGGGGTTCTGCTGGGGAGTTTACTGATACAAGAGGAAGAGACCAGAGATAAGAAAGTGGTGTCTGATTCCCCTGAATGCCCCtatttaataaaaaattaaaatcaggattggtgggtccccagCGGGACATTTGAGCTAACGTAGTCTAATGCAATTAGCatatgaggttgtaagtaacaagaacatttcccaggacatagacatatctgatattggcaaaaAGCTTAAagtcttgttcatctaactgcactgtccaatttacagtagctattacagtgaaagataccatgctattgtttgaggagagtgcacagttttgaacatgaaaaggtATTAGTAAGCAAATAAGGCATATTtgagcagtcttgatacaacattttgaacagaaatgcaatggttcattggatcagtctaaaactttgcgcatacactgctgccatctagtggacaaaatcTAATTTgaacctgggctggaataatacat

Function

NR:

description
GTPase IMAP family member 8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597299.2 True 2756 mRNA 0.46 4 51621354 51624586

Neighbor

gene id symbol gene type direction distance location
LOC110520169 il1rl1 coding upstream 38787 51573980 ~ 51582567 (+)
LOC110520168 LOC106586274 coding upstream 88720 51504521 ~ 51532634 (+)
pdxka LOC106586273 coding upstream 121265 51490352 ~ 51500089 (+)
LOC110520165 LOC106586271 coding upstream 344943 51267073 ~ 51276411 (+)
LOC110520164 LOC100137092 coding upstream 359138 51258792 ~ 51262216 (+)
LOC110520174 LOC106586278 coding downstream 134670 51759256 ~ 51766986 (+)
LOC110520177 LOC106586282 coding downstream 756345 52380931 ~ 52442609 (+)
LOC110520178 LOC106582420 coding downstream 884189 52508775 ~ 52567291 (+)
LOC110520179 arl4c coding downstream 960425 52585011 ~ 52587048 (+)
LOC110520180 LOC106586330 coding downstream 1083785 52708371 ~ 52760376 (+)
G270374 il1rl1 non-coding upstream 12736 51552112 ~ 51608618 (+)
G270371 il1rl1 non-coding upstream 14806 51550751 ~ 51606548 (+)
G270369 NA non-coding upstream 71417 51549729 ~ 51549937 (+)
G270363 NA non-coding upstream 83226 51537647 ~ 51538128 (+)
G270451 NA non-coding downstream 58592 51683178 ~ 51683426 (+)
G270497 NA non-coding downstream 128100 51752686 ~ 51752919 (+)
G270483 NA non-coding downstream 143537 51768123 ~ 51769068 (+)
G270486 NA non-coding downstream 144883 51769469 ~ 51770130 (+)
G270484 NA non-coding downstream 146024 51770610 ~ 51771617 (+)
G269291 rap2a other upstream 721077 50898589 ~ 50900277 (+)
LOC110520146 ino80d other upstream 1016538 50601983 ~ 50618761 (+)
hoxd3a hoxd3 other upstream 1438328 50162278 ~ 50184327 (+)
G267529 NA other upstream 1765852 49836617 ~ 49855502 (+)
acvr2aa LOC106586327 other downstream 1542366 53124656 ~ 53172428 (+)
LOC110520187 LOC106586325 other downstream 1596841 53174264 ~ 53235027 (+)
LOC110520190 LOC106586322 other downstream 1666744 53291284 ~ 53339392 (+)
G272965 NA other downstream 2024239 53648825 ~ 53652431 (+)
G273004 LOC106586313 other downstream 2032875 53657461 ~ 53658683 (+)

Expression


Co-expression Network