LOC100135875 (LOC100135875)


Basic Information

Item Value
gene id LOC100135875
gene name LOC100135875
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 51688835 ~ 51734299 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124252.1
ctaggcaagtcagttaagaacaaatctttGATGGGATTCACTTATGTCTGGACATTAACTTCCCTTGTTATTTGAGAACTGTCTGTgaggaagacagtgaatgttattTTGTTGGTGTTGTTGAACATTTTATAGCCGATTTACAGCAGAAGCGTCACCATGTTGAGTAACAACGCTGGAGTCTATGCTGTCAAAAAGCGGAAGAAGCCCGTTCAGAAAACCAAGAAAACCCCTGCTCCAGAAGTGGTCAAGTCGAACCCTTCCAAACGCCACCGGGATCGGCTGAATGGGGAGCTGGACAGGCTGACGGGCCTTCTACCATTCCCTGAGGATGTGTGCTCTCGCCTGGACAAACTCTCCGTGCTCCGCCTCAGCGTTGGGTACCTGAAGGTCAAGAGCTTCTTCAAAGCGACCATGAAGAAAAGCAGTGTCCTGTTTCCCAGTGGGAATGGGCTGAACATTAATGGGATGGAAGCCACAACCTTCTCCAAGGGGGACCTTCTACTCcagGCTCTGAATGGCTTTGTGCTGGTGGTCACAGCTGAAGGACATGTGTTCTATGCCTCTCCTACTATCCAAGACTACCTGGGCTTCCATCAGtcagaCGTGGTTCACCAGAGTGTGTTTGAGCTGATCCACACAGATGACAGAGCCACGTTCAGACGACAGCTTCACTTTGCCCTCAACCCCAAGCCCTTTGACCCAGAGCAGGGAGGAGACGGCATGGCAAGCAGCAGTGACATCACCAGGAACATTGTGACCTATAACCCTGAGCAGCTCCCCCCAGAGAACTCCTCCTTCCTGGAGAGGAACTTTGTGTGTCGCTTCCGCTGCCTCCTGGACAACTCCTCTGGCTTCCTGGCTCTGAACTTCCAGGGGCGTCTCAAGTTCCTCCATGCCCAGAGCATGCTGGGGGATGACGGGACACGCAGCCAGCCCAACCTGGGCCTGTTCACCATCGCCACCCCTGTCCAAAACCCGTCCATTTTGGAGATCAGAACTAAGACAATCTTCTTCCAGACCAAACACAAGCTCGACTTCACCCCCATGGGTGTTGATGCCAGGGGGAAGGTTGTCCTGGGCTACTCAGAGATGGAGTTGTGTATGAGAGGCTCTGGTTATCAGTTCATCCATGCAGCTGATATGATGTACTGCGCAGACAACCATGTCAGAATGATTAAGACAGGAGAGAGTGGTCTGACCACGTTCAGACTGCTTCAGAAGACTGGGTGCTGGGTCTGGGTCCAGGCCAATGCCAGGCTCGTCTACAAAGGAGGAAGACCTGACTTCATCATCGCACGCCAGAGAGCTTTGCTTAATTCCGAGGGAGAGGAGCATTTACGCCAGAGGAAGATGGAGCTGCCCTTCAGCTTCACCACCGGGGAGGCCCTGCTGTACGAGACCGGCCCCACTCTGGATGCCACTGAGTTCCAAACCAACTCCCCAAAAATCCGCAAGGTGGAGTCTCTGGACCCCCAGTCTCTGCTGGGCTCCTTAATGAACCAAGATGAGTCCATCTACACCCAGCCCCAGGAGCCTCAGCTACCCATAGACCAGGCATTCATGGACAGCCGAGCGCTCACCAATGTGGCCTGTAACTCCTGGCAGAGTAGCATGGAGCCCCAGGGGCCCGACGGGGATGATGATGGTGACGGCCCCAGTGAGGTGAAGCAGAAGGGGGCGGTGGTGGCCATGATAGACGCCCTGGAGAAGATGGCACGAGATGGGGACCTGTGTGAGGCGCTGCAGGGGCTGGACGTGGACGAGGCCGAGCTGATGGAGTGGGAGAGTGCCCTCCTCAGGCTGAGCCAGGAATCCAACGGGACTGGGGGCGGGGATACCTCCCCGGAGCTGGATGACATCATGACCAATGACATCTTCTCTTACGTGGAGGAAGCCTTGTTCAAGGAGAGCAGCGAGGGGAGCGGTAACCAGCCCAACTGCTCCATTATGGTCAACAacaaccctaacctaaacctgtTCACAGAGGTgtttaacaacaacaaccaggatgGACCATTCCCAGGAATGGTCAGCCCTACAGGTGTAGGACAGTGCAAGCCCGGGTTGCTTGACAGCCGCAGCTTTATCCATAATGGCTCCCCAGTGAACAGTCTAAATGGTCAGGTAACAGGCAATGGACCAGATGGTTTGGCAGGACAGAACCAGGCAGGACCACACCAGGTGTTCAACAGCACCCAGAGGCTCTCCCACTTTGGCCCCCAGATCCCTCAGATGGACCTGAACATCCCCACCCTGCAGCAGCTACAGCTCAATGACATCTTCACCCCCTCTCTGGAGCTCCCCGAGCTCAGTATCCCACACAGCTCAGGCCAGAACGGGGCTGTTACGTTTTGCACCAACATGGCTGGATCCTGTGCTCAGGCACCAAACAACCACATGGGAAGCCCTCAGGGTATCACTGGCCGGGTCCACTCTAACCAGCCACCTCCACAGTTTTTCACTCATAATGGCTTGCCAGCTACAATGGCATCAAACGGACCACAACAGATCTCTGTTCCGCAGTCCAACCATGTAGCACCTAGTCTGGTGGATGGCTGGGCATCCATGATTCCCAGTAATGCCTTTGTTTCACCCCAGATTGAATCTAGCAATCTCAATCTATCTAATCCCCTTCCGACTGCTTGCCTTCAGGGAAACAGTGCACCATTTCAGTCACTCAAAATCCAGAGAGTTCTGCAGTGGCCCCAGAACCAGCAGCAGCTGCCACCCCCAGCCAGCACAATACAGAATGGAATAATGGCAAATGGACACACATTCATCCCTGACTGTCACAGTCAAGACTCAGAGACTCAAAGAGTCCCTCTCACAGGCATTTGGCCACAGAACCCCAACAGACTGTACCACCAAACTCAGCATGGGGGATTGGCCAATGGCCAGCCTGCTCCATCCAGTAGCTGCATGTTTGAGAACATCTCACCCCACCTACCTAATGGAAACAGCCACGTGGATGGCACCAGGCTGGCCTCCACGTTGTCTGTATGCCAGAGTAGGATGGTGGACCCCCAGGACCAGAGTCCTCCAAAGGGCTCTTGCTACTTCCAGTGGGGCCCCAGTGAGCCGGTGGTGGGCACGTCAGCCGTCATCCAGGACAGCACCAGCACCAGCCCCCCGTCTCGCCCGCTGGTGGCCAACATAACCACCCCTGAGGGCCTACTGGCCATGCAGCAGTACCTGGCTGGATGCAGCGGAGTCGGACAGACACAGATTCCAAGCCTCCCTGTTATAGACAGCAATGGAATATTATCTTTACCACCCCTTGTAAATGGATCCATGTGCTTTACAGAGCACAACCAAATCAACTATTGCAACTTCTAAACATGCGTCACATTGCCTTACGAGGTACAAAtggcggacagagagaggaggaagccaTCCATGAATCTATTCATCCTTCCGTGAATCTATTCATCCTTCCATCTGTACGCTTTCATAGACAACCCTCTGCCTTAAGAGATGTCTCAGTGAGGGTGTTGTGAAGACAAGCCATCCCCTCATCATGTGTGGTCAAACACACCATCCCATCTCCCCATATCAGTGTTTGCAGTAAATACAAGGACTCCTTTAATTACCCCTTGTCACTTCTGTCAGCAATGGAACAAAAAGCGATAACTTCAAATTGAAATTCAAGTTTTCACTCatgggaaaacaaaacaaaatactaATGTTGTACACAAAAATAAAGTCATAACAAACATTTTTGTATGGAGTGTAAATACAGAAATTGAATCTATATTCTTATATAAAGACATTATGTAAAACG

Function

NR:

description
aryl hydrocarbon receptor beta

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124252.1 True 3784 mRNA 0.52 12 51688835 51734299

Neighbor

gene id symbol gene type direction distance location
LOC110520172 LOC106586277 coding downstream 7923 51630789 ~ 51680912 (-)
il1rl1 il1rl1 coding downstream 69359 51596933 ~ 51619476 (-)
LOC110520170 il1rl1 coding downstream 129496 51550697 ~ 51559339 (-)
fgf9 NA coding downstream 210325 51471899 ~ 51478510 (-)
LOC110504232 LOC106586097 coding downstream 218159 51464211 ~ 51470676 (-)
LOC110520176 LOC106586280 coding upstream 83265 51817564 ~ 51844042 (-)
LOC110520175 LOC106586279 coding upstream 222035 51956334 ~ 52075676 (-)
LOC110520181 adprh coding upstream 952624 52686923 ~ 52692178 (-)
LOC110520182 NA coding upstream 970653 52693956 ~ 52708816 (-)
gtdc1 gtdc1 coding upstream 1046482 52780781 ~ 52826389 (-)
G270682 NA non-coding downstream 20729 51665525 ~ 51668106 (-)
G270627 NA non-coding downstream 141999 51546561 ~ 51546836 (-)
G270626 NA non-coding downstream 142415 51545686 ~ 51546420 (-)
G270625 NA non-coding downstream 145522 51542803 ~ 51543313 (-)
G270730 LOC106586278 non-coding upstream 24845 51759144 ~ 51760413 (-)
G270732 NA non-coding upstream 36323 51770622 ~ 51771489 (-)
G270806 NA non-coding upstream 124755 51859054 ~ 51859385 (-)
G270810 NA non-coding upstream 127422 51861721 ~ 51862036 (-)
LOC110520160 LOC106586095 other downstream 559525 51126600 ~ 51130404 (-)
LOC110520139 LOC106586251 other downstream 1245963 50440201 ~ 50442930 (-)
LOC110520121 LOC106581751 other downstream 1787297 49895327 ~ 49901575 (-)
G272713 LOC106586324 other upstream 1515627 53249926 ~ 53251084 (-)
G274344 LOC106586294 other upstream 2945619 54679918 ~ 54682805 (-)
LOC110520227 plekhm3 other upstream 3369195 55068639 ~ 55122013 (-)
G275250 NA other upstream 3675844 55410143 ~ 55411487 (-)

Expression


Co-expression Network