LOC110520176 (LOC106586280)


Basic Information

Item Value
gene id LOC110520176
gene name LOC106586280
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 51817564 ~ 51844042 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974560.1
agagagacaaacaaacagGCGAAACCAGAAGCCATGACACAACCCATGCCAACCAGTCTGAGTGAAACAGCAGACATGATAACCCCTGTTGTTTGCGATGTGGATGATGGATACTTTGATGCCATACTAGGAGCTGTCATTGCTGCTGTGGTCCTGGTGCTTCTTTGCTTGGCAGTGGTAGTGATTCGCTACATGTACCGGCACAAAGGCACCTACCACACCAATGAGGCCAAGGGCACCGAGTTTGCCGAAACAGCGGATGCGGCACTTCGAGGCGACCCGGCTCTGCAGGATGCCATGGACGAGAGCAAGAAGGAGTACTTCATCTGATCTCAGGAGCGGCACCCCCTGCTGTTTACAATGAACTTGGTCTGCCAAAATAAGTGTATTTTGGGGTTGGAGGATAGAAAAGCTTGGAGAGGGGGTGAAAATCGCCTCGCCATACTGAGGCTCAGAGTGACTGTTCAGACAATCTACCAAAGAAACATCAGATGCATCTTACAATAATATCAATTCAGTATTCTTCCccctatctgtttctctctccaatGTATTTGGCATATCACCATGCATATACACTTTTCAAAACACTGACTTTGCTATTAGGAGGCTATATTTTTGTCATGCAGAAGTGGGGAACAGTGAGGAAAAAAGCTTCTTATGAGGATCTAAGGCACCCATAGACACCTATGCCTTCTGTGGAAAAAGCAAGAGTATTCCTAGAACACAGAGTTGTAAGTAATGGACCCTTCTCAAAAACGTCAATGATGAAACTCAAGGAAGTGAATGAATGTAGAATTTCTCTACAAGCTCACAAAACAAACTCTATTTTCTAATGGTATTGAAACCAAAGCAAAATCAATTTTGTAAAGAAGAAACCTCTCAATAAATAGTAGGAGGAAAACATGGAACAAATGATGTCGAAGGAAGCGACTTTTACTGTACGAAATTAATCACCAATGGGCCCTTACCAAAATCCTGAATACGTCTGGTTGCTCCCGGAATTACTTTTCAATAACTTTTGTTTGGATTGTGATTGTCAATTTGTGAGTGTTCAAGGGAATGCCTTTAGCAATGGTTAATAACTAGTTAATTACAGATCCAAAGAGATAAAGTGATAGCTGAACAACCTAAAACTGCAGGAAGACCTTGCCGGATGAGGTTAGTTGTGAATACCAAAGTGATGCTCTGTCttagacagggaggatcaggGTTCAAACAGGTTCCTAATGACATTTTCTCACTAGTAGCCAAAAATCAATTCCAAGTATATTGACATGCTATTTGGATAGCCACAGAAAACCAAACATATAGTGTGATCTTCCCATCCTGATTTGGGCTTAATAAATTACACTAACAACAAAGTATTGTGCAGTTTGTGTCCATACATTTTTTAGCATGAACATTATAGACCTGACATTTTTTGGATTGATGCAGAAATCAAGGATGACTTTGTGAGCACCAGAGGTTCCTGTATAAATGTCTAAGGGTGGATAAGTGTTGTGATCTGGTCAAGGCCGTAACCATATTTGTAGAACTATTTGTGGGGCAATTTCTTGGAACACTGTAATGATGTTTTTTAAATTGCCTTGCTAAGGAAAAATATTGAAGTACAACTCATTCAGCTGTAACTGCACTGCCTCAGTAAAACGACAACTGCAATCATTGGATATTGTTTGTGACGTTCCGCCAGGATGATACTAGACAAAAATGAGAACActcaaggatttttttttttttgtcaattaattTTATTGTGGTGGAAATGGCAACTGAaaataagcccccccccccccccccccatgctccAAATCTAATTTCAATTCCCCAAACCCTTTTTCTCTTCTCTGCTGGCTTTGATTAATGTGAACTTTTCTTTGTCTCCATGATTGCCTAGTTCTGAAAGAATAGAAGGGACCGTTTTCTTGATTCAAAAAAGAAGGTTTGTTAGAAGGGACAATGCAAGATGGCTCCTCTGCAAATTATGCTTTGATAACTAGTGCTGATGCAAACAAGTATAAGACACATACGCAGCAATGTAACTATTCACTCTCCTGAGGgcggacactttttttttttagatcacACCTTAAATGGAGTGTAAGACAATTGCTaccaaaatgtatttaatctcTGCTGAAGATAACGAAATTCTCTCCAGCTTGTAATTTCCTAACACAAGATAAAAATGAGAAGACTTGTAGTAAGAGGATGCATGGCTATGCCAAGGCATAGCACTTAACAGAAGCTGTTCCAGAACTGAAGATACCTTGATCCCGGGATTGTGCATAATTTGTTTGCTTTTGGCCCTCTTTGCAATAGTGCATGTCATTGACTTTCACTATAAGTGTATTTCATACATTAATAGCAGCTTTCAAACTGAGAGCTCTCTGTAACTACAGTTCATTTTTGTTTTTTCATTCTTAACTGACAGGAGACCACTGACattgagaaacagagaggagagatctGAGCTAGCCTCAGCGGCAGTAAGAAATACAACTTTACTCTCTGTTTCTTTTGCACTGTGGGATTACCAGATTCAAGTGGCAGGAATTTACTCTTTACGTCCCCTTCACCTTGAATGTTTTCTTAACTGTTGAATTATTCATGTTCACGCATTATTTTGAAgctcaaatgttttatttatttccacGAGGTAAATCCAACTAAAAGCAAATAAAAGGCATTCTAAGTCAA
>TU307617
GAAAAAACAGTTCATGTGCTGCATAGCACACTCGGTTCTTAGGGCGAGAGAAAAATTGTTTTGGCTACagacacttttagggtgaatgtCTTAAGGTGAAATATTTGTTAAGAGGGAGGACTGACTACCTTTAAATGTTCTGCTAACCTGTTCTGAATAAGGGTTTATTCTTGGAGAGTGGAGTTAGAGAGAACAGGAAGGGGTTCTTGGAAACCTGTTGCTGTGCAGCCGGCGAAACCAGAAGCCATGACACAACCCATGCCAACCAGTTGCCTTCCCTCACGCCACACCCTTCAGACACCTGCTTTCTGCAAGTTGTTGGCCTCCTCACTCACTTGCTTCCTTCCCGAGCTGTGATTGAAATGTTGTCATTGAGAATTCTGGTCGCGGTTAGAGACTCTGTCAGAAAATGGATAAGGGTTGTCAGGGTAGCAACGAGCAGCGAAGTAGCCATggaaggaaaggggagagggatgaTCATGGCACATGGGTAGGTCTGCGAGAACCAACGCTCCACATATTTAacttgttacaacacaacacataacatttGATAAACAACCTCGGGTTCCAAGAAGCGCTCCTTCAAGGACCAATTTTCTGATAGGATCTCTCGTACATTCACGCCTACAGCCAGAAGAAATATGCTTTCCACTTTTGATGGGATGCCTGATAATAAAAAGTGTTCAACACTGAAAATACAGGTTTGTAAAGCCTGTCCAAGTTTAACACAAAATGGTGTCTGACAAGCTTAAAACTCCAACtcatatatatgatatattgGGCTTTTACGGGGGCGACCCACTCAAGGCTACTTACAGGCCTGGTCGTCTTCTGTATACAGCATTTCACTCCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974560.1 False 2700 mRNA 0.40 5 51817564 51842848
TU307617 True 858 lncRNA 0.45 3 51830871 51844042

Neighbor

gene id symbol gene type direction distance location
LOC100135875 LOC100135875 coding downstream 83265 51688835 ~ 51734299 (-)
LOC110520172 LOC106586277 coding downstream 136652 51630789 ~ 51680912 (-)
il1rl1 il1rl1 coding downstream 198088 51596933 ~ 51619476 (-)
LOC110520170 il1rl1 coding downstream 258225 51550697 ~ 51559339 (-)
fgf9 NA coding downstream 339054 51471899 ~ 51478510 (-)
LOC110520175 LOC106586279 coding upstream 113486 51956334 ~ 52075676 (-)
LOC110520181 adprh coding upstream 844075 52686923 ~ 52692178 (-)
LOC110520182 NA coding upstream 862104 52693956 ~ 52708816 (-)
gtdc1 gtdc1 coding upstream 937933 52780781 ~ 52826389 (-)
zeb2a LOC106586328 coding upstream 984935 52827783 ~ 52875770 (-)
G270732 NA non-coding downstream 46075 51770622 ~ 51771489 (-)
G270730 LOC106586278 non-coding downstream 57151 51759144 ~ 51760413 (-)
G270682 NA non-coding downstream 149458 51665525 ~ 51668106 (-)
G270627 NA non-coding downstream 270728 51546561 ~ 51546836 (-)
G270806 NA non-coding upstream 16206 51859054 ~ 51859385 (-)
G270810 NA non-coding upstream 18873 51861721 ~ 51862036 (-)
G270819 NA non-coding upstream 31122 51873970 ~ 51874196 (-)
G271339 NA non-coding upstream 89770 51932618 ~ 51936246 (-)
G271340 NA non-coding upstream 90603 51933451 ~ 52019756 (-)
LOC110520160 LOC106586095 other downstream 688254 51126600 ~ 51130404 (-)
LOC110520139 LOC106586251 other downstream 1374692 50440201 ~ 50442930 (-)
LOC110520121 LOC106581751 other downstream 1916026 49895327 ~ 49901575 (-)
G272713 LOC106586324 other upstream 1407078 53249926 ~ 53251084 (-)
G274344 LOC106586294 other upstream 2837070 54679918 ~ 54682805 (-)
LOC110520227 plekhm3 other upstream 3260646 55068639 ~ 55122013 (-)
G275250 NA other upstream 3567295 55410143 ~ 55411487 (-)

Expression


Co-expression Network