LOC110520179 (arl4c)


Basic Information

Item Value
gene id LOC110520179
gene name arl4c
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 52585011 ~ 52587048 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597313.2
CTTTCTGCTCTCTCATCAGTGTGTATGCTGCGGCCGCAGTGCTAGGAGTCGGACCGCATGTGCCGTCACGTAGCCTACCATAAAGCTCATAACATCAACCCAAATTCATAGCTGCAATAATTGTAATTTTGTTTATGGACGCAGTGTAGCCATTTCTCGCGATAATTTGGACTCATCCACGAATCGCaggtggatttttttttctttcttctatCCCGGAACGGAGGCTCGTTTTTTGGACAGCCAACGTGCCTATAGAGGAGACGTGGGGACGGGAAACAAGTGCGCAGTGCTCACGGAGAAAACAGTAGAGAGACAGCAAGCAGTGTGTTTGTTGTAACCCACCAGGATCGTCCTTTAGCTGTCTGGTGAGTGTGGGGAGTTCGACAGTTGCGAAATGAAATGAATATTAACTGGAGTGTGGAGAATAATTCTAATGAACCCCGCGCTGCGTCCTACAGATGAGGACACTGTTCCCCAATGCTTCTGAGGGGAAAACGAGGATGAACCATCCAAAGCGCACGTCGGGCCTGTAAACACATTGACTTTACGTTTGTTGAAAGGCTATCGTTGTTGAGGATTCATCGACGATACTATTGAACATTGAAACGCTGTTTTAGGTCATCACATTGGTTCTGTAGAGAAGCTAGACGTTCCCTTCACCTGCTATTGAAAATGGGCAACAGTTTCTCCAACATATCTGCTTTCCAATCCCTTCACATTGTGATGCTGGGGTTGGATTCGGCTGGCAAAACGACTGTTCTTTATCGTCTGAAATTCAACGAATTCGTAAACACCGTGCCAACAATTGGATTCAACACTGAGAAAATCAAACTCAGTAATGGTACGGCAAAGGGGATCAGCTGTCACTTCTGGGACGTCGGAGGCCAGGAGAAGCTCCGACCCCTATGGAAATCCTACAGTCGGTGCACGGACGGCATCATCTATGTGGTGGACTCGGTAGACGTCGATCGGCTGGAGGAGGCTAAAACGGAACTGCATAAAGTTACCAAATTCGCGGAGAACCAGGGGACACCGCTGCTGGTGATAGCCAACAAGCAGGACCTGCCCAAATCTCTTCCAGTCGCGGACATTGAAAAACAGCTGGCTCTCCACGAGCTCACCCCATCCACCACATACCACGTCCAACCTTGCTGCGCAATAATTGGCGAGGGACTCCACGAGGGTATGGACAAACTATATGAGATGATTGTAAAGCGGAGAAAGTCTTTAAAGCAAAAGAAGAAACGATAACGACCGCCTATGGGTCGTAGCCTATGGACCGTTCATTAACCTAAACCTACGCAACATTACTGTATCTAAATGCTGTTTGGGTATGCCAATGTTGCCCTAAGATGACATTTACTTTGCGGTGATTGTTGTATTTCCTTTCATTGGGTTGTAAAAGTTGCTGACGCTGTGAATCCTATAGCTGAATGATGCTTTTGCACGCAAGAGGGTGATCCTATTGGTGCAAGATATTTACTAAGGTTAACCAAAACAAACTTGATATTAATTTTATCATAGGAACAAAAGCATTACATGAATGCGGGCTGGCCCGTCATTTACTGCTTTTACCACGGACTATAAATCTGTAGCTCAACATGTTATTTTGAAGAAGCATCCCATACAGTATAGGCCTATACTGTGATGGACTATGGACATTCTGACGGAATGCTTCTTTGGACAGCAAGTTTTACTTTGCACGTTAAGTGGATGTGGGTCACAATGAAATGGACCCTGTTCATTcatggagaagaaaaaaacagaaaCCAAGATATCTGTATTATGAAAGTCACACCTCAGTCCCTGTATGGGTTTATTAATGCAGAGGTCAACAAGGCTTTGGAGCGATGAAGTTTACTATGCGTGGTGGACTGAGGATAACATTGTCTGCAACGTGGTCCACTACTTTGCACTTTTAATTTCCTAACAAAATAGTAGAGTACTACACTGTATAGCAAAAAACCAGGCTGTGTATGTACCAAAAAGCCCAAATTGAATTATTTTTTGAATATTAAAATGTATACAAATTGCA

Function

symbol description
arl4c Enables alpha-tubulin binding activity. Involved in endocytic recycling. Located in cytosol and plasma membrane.

NR:

description
ADP-ribosylation factor-like protein 4C

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07945 ARL4; ADP-ribosylation factor-like protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597313.2 True 2038 mRNA 0.45 1 52585011 52587048

Neighbor

gene id symbol gene type direction distance location
LOC110520178 LOC106582420 coding upstream 17720 52508775 ~ 52567291 (+)
LOC110520177 LOC106586282 coding upstream 142402 52380931 ~ 52442609 (+)
LOC110520174 LOC106586278 coding upstream 818025 51759256 ~ 51766986 (+)
LOC110520171 LOC106586099 coding upstream 960425 51621354 ~ 51624586 (+)
LOC110520169 il1rl1 coding upstream 1002444 51573980 ~ 51582567 (+)
LOC110520180 LOC106586330 coding downstream 121323 52708371 ~ 52760376 (+)
LOC110520185 NA coding downstream 287880 52874928 ~ 52942773 (+)
acvr2aa LOC106586327 coding downstream 537608 53124656 ~ 53172428 (+)
LOC110520187 LOC106586325 coding downstream 587216 53174264 ~ 53235027 (+)
LOC110520189 LOC106586324 coding downstream 648495 53235543 ~ 53253493 (+)
G270862 NA non-coding upstream 648613 51932868 ~ 51936398 (+)
G270795 NA non-coding upstream 731955 51852747 ~ 51853056 (+)
G270484 NA non-coding upstream 813394 51770610 ~ 51771617 (+)
G270486 NA non-coding upstream 814881 51769469 ~ 51770130 (+)
G270483 NA non-coding upstream 815943 51768123 ~ 51769068 (+)
G271855 NA non-coding downstream 19226 52606274 ~ 52606501 (+)
G271858 NA non-coding downstream 20774 52607822 ~ 52608280 (+)
G271878 NA non-coding downstream 33723 52620771 ~ 52621041 (+)
G271885 NA non-coding downstream 38054 52625102 ~ 52625348 (+)
G271900 LOC100136012 non-coding downstream 48047 52635095 ~ 52635354 (+)
G269291 rap2a other upstream 1684734 50898589 ~ 50900277 (+)
LOC110520146 ino80d other upstream 1980195 50601983 ~ 50618761 (+)
hoxd3a hoxd3 other upstream 2401985 50162278 ~ 50184327 (+)
G267529 NA other upstream 2729509 49836617 ~ 49855502 (+)
LOC110520190 LOC106586322 other downstream 704282 53291284 ~ 53339392 (+)
G272965 NA other downstream 1061777 53648825 ~ 53652431 (+)
G273004 LOC106586313 other downstream 1070413 53657461 ~ 53658683 (+)

Expression


Co-expression Network