gtdc1 (gtdc1)


Basic Information

Item Value
gene id gtdc1
gene name gtdc1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 52780781 ~ 52826389 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974564.1
GACGGTATCACGCATGGACGAAATATGTGCGTCCTTTTTTCTAGCAAGCATATTCAGGAAGAGATTCAGAATAGCCTATCCATGAGTGTGCTACTGGTAGAGGCGTTCTACGGTGGCTCCCACAAACAGCTGATAGACCTGCTTAGAGAGAATGTGGACGACTGCGTGTCCTACACACTGCCAGCTAAGAAATGGCACTGGAGGGCCAGGACAGCAGCCCTGTACTTCATGCAGGCTATCCCGGCTAGCCCCTCATACAGGGTCCTGTTTGCCAGTTCTGTGCTGAACCTGTCTGAACTGGTGGCCCTGCGTCCTGACCTGGCCACACTGAAGAAGGTGCTCTACTTCCACGAGAACCAGCTGGTCTATCCAGTCCGCAAGAGCCAGGACAGAGACTTCCAGTACGGATACAACCAGGTTCTCTCATGCTTGGTGGCAGATGTGGTGGCGTTCAACTCTTCTTTCAACATGGAGTCTTTCCTGTCCTCCATTTCGTCCTTCATGAAGATGATCCCCGACCACAGGCCCAAAGACCTGGACAAGCTCATACGCCCAAAGTGTCGGGTCCTCCACTTCCCCATCCAATTCCCCCATGTCACAAGcagacCTGAAGTACTACTCAGTCCAGTAGAAGAGGAAAAGGAGGGACTTCTCAGTCTCAGCTCCCCTCCGGCTGCCATCCTGGATCAGAGGGAAGGCACCGGGCAGGCCGAGGCTCCTTCTCACCCCAGGGAAGAGCGAGGGCCtgggggagggaaggaagagggggatggaggaggagaagagagccaCGTCAGACCTCTTCATATCGTCTGGCCTCATAGGTGGGAACACGACAAAGACCCCGAGCTCTTCTTCAAGATGCTGCTGAAGCTGAAAGAGAGAGGCCTGGGCTTTcaactgtctgtcctgggggagACCTTCACTGacgtaccagACATCTTTGCAGAAGCCAGAGTGGACCTGAATGCCCATGTCCTCCACTGGGGGTTCATGCCCAGTAAAGAGGACTACCTCCATGTCCTCTGCCAGGCAGATGTGGTGGTCTCCACAGCCAAGCATGAGTTTTTTGGAGTGGCCATGCTAGAAGCTGTTCATTGTGGCTGCTATCCACTTTGCCCCAAGGCTTTGGTGTATCCTGAAATATTCCCAGAGGAGTATCTGTACTCTACACCTGAGCAGCTTTATAAGAAATTACAGGGACTGTGCAGAAGGCCATACGTGGTGAGGAGACATCACGTTAAGgtTGACACCAGTTCCTATTCCTGGGCTGCGCTGAAGGAGGACTTCAGGAGTCTGCTGGCATACAAAGAGGACCACCATCCCTGACGGACAGACTACAACTGGGCCAATGCGAGTCCGAGGATCTGCTCAGAAGTGGGCACACTTAGTTCACTCGATTAGTGGCAGAATGAGATGGATTTAAAGGTTGATGGAAAGTCTGCAGCgtagcgagggagggagagtctCAAGGGCTGTCGTCATAGCTGCCTGACATGGAGCCACGGGCAACAAACCTGTGGTGGCCTCAGACAGCCTgtccccaccacctctctctctccactcagctCCACTCTGCTCAAATCAAAGCCATGCCTTTGAGACATTGTGCCTGTTGTAAACGTCCCCATCTTCACGTGCGAGAGGGAGAGGTCTTTTATGTCTACTGTGGTTTGAATTTGAAATAAAGAGAAAAGAACGTGTAAA
>XM_036974565.1
TGACGGTATCACGCATGGACGAAATATGTGCGTCCTTTTTTCTAGCAAGCATATTCAGGAAGAGATTCAGAATAGCCTATCCATGAGTGTGCTACTGGTAGAGGCGTTCTACGGTGGCTCCCACAAACAGCTGATAGACCTGCTTAGAGAGAATGTGGACGACTGCGTGTCCTACACACTGCCAGCTAAGAAATGGCACTGGAGGGCCAGGACAGCAGCCCTGTACTTCATGCAGGCTATCCCGGCTAGCCCCTCATACAGGGTCCTGTTTGCCAGTTCTGTGCTGAACCTGTCTGAACTGGTGGCCCTGCGTCCTGACCTGGCCACACTGAAGAAGGTGCTCTACTTCCACGAGAACCAGCTGGTCTATCCAGTCCGCAAGAGCCAGGACAGAGACTTCCAGTACGGATACAACCAGGTTCTCTCATGCTTGGTGGCAGATGTGGTGGCGTTCAACTCTTCTTTCAACATGGAGTCTTTCCTGTCCTCCATTTCGTCCTTCATGAAGATGATCCCCGACCACAGGCCCAAAGACCTGGACAAGCTCATACGCCCAAAGTGTCGGGTCCTCCACTTCCCCATCCAATTCCCCCATGTCACAAGacCTGAAGTACTACTCAGTCCAGTAGAAGAGGAAAAGGAGGGACTTCTCAGTCTCAGCTCCCCTCCGGCTGCCATCCTGGATCAGAGGGAAGGCACCGGGCAGGCCGAGGCTCCTTCTCACCCCAGGGAAGAGCGAGGGCCtgggggagggaaggaagagggggatggaggaggagaagagagccaCGTCAGACCTCTTCATATCGTCTGGCCTCATAGGTGGGAACACGACAAAGACCCCGAGCTCTTCTTCAAGATGCTGCTGAAGCTGAAAGAGAGAGGCCTGGGCTTTcaactgtctgtcctgggggagACCTTCACTGacgtaccagACATCTTTGCAGAAGCCAGAGTGGACCTGAATGCCCATGTCCTCCACTGGGGGTTCATGCCCAGTAAAGAGGACTACCTCCATGTCCTCTGCCAGGCAGATGTGGTGGTCTCCACAGCCAAGCATGAGTTTTTTGGAGTGGCCATGCTAGAAGCTGTTCATTGTGGCTGCTATCCACTTTGCCCCAAGGCTTTGGTGTATCCTGAAATATTCCCAGAGGAGTATCTGTACTCTACACCTGAGCAGCTTTATAAGAAATTACAGGGACTGTGCAGAAGGCCATACGTGGTGAGGAGACATCACGTTAAGgtTGACACCAGTTCCTATTCCTGGGCTGCGCTGAAGGAGGACTTCAGGAGTCTGCTGGCATACAAAGAGGACCACCATCCCTGACGGACAGACTACAACTGGGCCAATGCGAGTCCGAGGATCTGCTCAGAAGTGGGCACACTTAGTTCACTCGATTAGTGGCAGAATGAGATGGATTTAAAGGTTGATGGAAAGTCTGCAGCgtagcgagggagggagagtctCAAGGGCTGTCGTCATAGCTGCCTGACATGGAGCCACGGGCAACAAACCTGTGGTGGCCTCAGACAGCCTgtccccaccacctctctctctccactcagctCCACTCTGCTCAAATCAAAGCCATGCCTTTGAGACATTGTGCCTGTTGTAAACGTCCCCATCTTCACGTGCGAGAGGGAGAGGTCTTTTATGTCTACTGTGGTTTGAATTTGAAATAAAGAGAAAAGAACGTGTAAA
>XM_036974566.1
ATGACGGTATCACGCATGGACGAAATATGTGCGTCCTTTTTTCTAGCAAGCATATTCAGGAAGAGAATAGCCTATCCATGAGTGTGCTACTGGTAGAGGCGTTCTACGGTGGCTCCCACAAACAGCTGATAGACCTGCTTAGAGAGAATGTGGACGACTGCGTGTCCTACACACTGCCAGCTAAGAAATGGCACTGGAGGGCCAGGACAGCAGCCCTGTACTTCATGCAGGCTATCCCGGCTAGCCCCTCATACAGGGTCCTGTTTGCCAGTTCTGTGCTGAACCTGTCTGAACTGGTGGCCCTGCGTCCTGACCTGGCCACACTGAAGAAGGTGCTCTACTTCCACGAGAACCAGCTGGTCTATCCAGTCCGCAAGAGCCAGGACAGAGACTTCCAGTACGGATACAACCAGGTTCTCTCATGCTTGGTGGCAGATGTGGTGGCGTTCAACTCTTCTTTCAACATGGAGTCTTTCCTGTCCTCCATTTCGTCCTTCATGAAGATGATCCCCGACCACAGGCCCAAAGACCTGGACAAGCTCATACGCCCAAAGTGTCGGGTCCTCCACTTCCCCATCCAATTCCCCCATGTCACAAGcagacCTGAAGTACTACTCAGTCCAGTAGAAGAGGAAAAGGAGGGACTTCTCAGTCTCAGCTCCCCTCCGGCTGCCATCCTGGATCAGAGGGAAGGCACCGGGCAGGCCGAGGCTCCTTCTCACCCCAGGGAAGAGCGAGGGCCtgggggagggaaggaagagggggatggaggaggagaagagagccaCGTCAGACCTCTTCATATCGTCTGGCCTCATAGGTGGGAACACGACAAAGACCCCGAGCTCTTCTTCAAGATGCTGCTGAAGCTGAAAGAGAGAGGCCTGGGCTTTcaactgtctgtcctgggggagACCTTCACTGacgtaccagACATCTTTGCAGAAGCCAGAGTGGACCTGAATGCCCATGTCCTCCACTGGGGGTTCATGCCCAGTAAAGAGGACTACCTCCATGTCCTCTGCCAGGCAGATGTGGTGGTCTCCACAGCCAAGCATGAGTTTTTTGGAGTGGCCATGCTAGAAGCTGTTCATTGTGGCTGCTATCCACTTTGCCCCAAGGCTTTGGTGTATCCTGAAATATTCCCAGAGGAGTATCTGTACTCTACACCTGAGCAGCTTTATAAGAAATTACAGGGACTGTGCAGAAGGCCATACGTGGTGAGGAGACATCACGTTAAGgtTGACACCAGTTCCTATTCCTGGGCTGCGCTGAAGGAGGACTTCAGGAGTCTGCTGGCATACAAAGAGGACCACCATCCCTGACGGACAGACTACAACTGGGCCAATGCGAGTCCGAGGATCTGCTCAGAAGTGGGCACACTTAGTTCACTCGATTAGTGGCAGAATGAGATGGATTTAAAGGTTGATGGAAAGTCTGCAGCgtagcgagggagggagagtctCAAGGGCTGTCGTCATAGCTGCCTGACATGGAGCCACGGGCAACAAACCTGTGGTGGCCTCAGACAGCCTgtccccaccacctctctctctccactcagctCCACTCTGCTCAAATCAAAGCCATGCCTTTGAGACATTGTGCCTGTTGTAAACGTCCCCATCTTCACGTGCGAGAGGGAGAGGTCTTTTATGTCTACTGTGGTTTGAATTTGAAATAAAGAGAAAAGAACGTGTAAA
>XM_036974569.1
AATGACGGTATCACGCATGGACGAAATATGTGCGTCCTTTTTTCTAGCAAGCATATTCAGGAAGAGATTCAGAATAGCCTATCCATGAGTGTGCTACTGGTAGAGGCGTTCTACGGTGGCTCCCACAAACAGCTGATAGACCTGCTTAGAGAGAATGTGGACGACTGCGTGTCCTACACACTGCCAGCTAAGAAATGGCACTGGAGGGCCAGGACAGCAGCCCTGTACTTCATGCAGGCTATCCCGGCTAGCCCCTCATACAGGGTCCTGTTTGCCAGTTCTGTGCTGAACCTGTCTGAACTGGTGGCCCTGCGTCCTGACCTGGCCACACTGAAGAAGGTGCTCTACTTCCACGAGAACCAGCTGGTCTATCCAGTCCGCAAGAGCCAGGACAGAGACTTCCAGTACGGATACAACCAGGTTCTCTCATGCTTGGTGGCAGATGTGGTGGCGTTCAACTCTTCTTTCAACATGGAGTCTTTCCTGTCCTCCATTTCGTCCTTCATGAAGATGATCCCCGACCACAGGCCCAAAGACCTGGACAAGCTCATACGCCCAAAGTGTCGGGTCCTCCACTTCCCCATCCAATTCCCCCATGTCACAAGcagacCTGAAGTACTACTCAGTCCAGTAGAAGAGGAAAAGGAGGGACTTCTCAGTCTCAGCTCCCCTCCGGCTGCCATCCTGGATCAGAGGGAAGGCACCGGGCAGGCCGAGGCTCCTTCTCACCCCAGGGAAGAGCGAGGGCCtgggggagggaaggaagagggggatggaggaggagaagagagccaCGTCAGACCTCTTCATATCGTCTGGCCTCATAGGTGGCTAGAAGCTGTTCATTGTGGCTGCTATCCACTTTGCCCCAAGGCTTTGGTGTATCCTGAAATATTCCCAGAGGAGTATCTGTACTCTACACCTGAGCAGCTTTATAAGAAATTACAGGGACTGTGCAGAAGGCCATACGTGGTGAGGAGACATCACGTTAAGgtTGACACCAGTTCCTATTCCTGGGCTGCGCTGAAGGAGGACTTCAGGAGTCTGCTGGCATACAAAGAGGACCACCATCCCTGACGGACAGACTACAACTGGGCCAATGCGAGTCCGAGGATCTGCTCAGAAGTGGGCACACTTAGTTCACTCGATTAGTGGCAGAATGAGATGGATTTAAAGGTTGATGGAAAGTCTGCAGCgtagcgagggagggagagtctCAAGGGCTGTCGTCATAGCTGCCTGACATGGAGCCACGGGCAACAAACCTGTGGTGGCCTCAGACAGCCTgtccccaccacctctctctctccactcagctCCACTCTGCTCAAATCAAAGCCATGCCTTTGAGACATTGTGCCTGTTGTAAACGTCCCCATCTTCACGTGCGAGAGGGAGAGGTCTTTTATGTCTACTGTGGTTTGAATTTGAAATAAAGAGAAAAGAACGTGTAAA
>XM_036974567.1
gctgtggtaaataGTGTACATCGGGTGAGAGGCGTTCCTAAAATGACGGTATCACGCATGGACGAAATATGTGCGTCCTTTTTTCTAGCAAGCATATTCAGGAAGAGGGTCCTGTTTGCCAGTTCTGTGCTGAACCTGTCTGAACTGGTGGCCCTGCGTCCTGACCTGGCCACACTGAAGAAGGTGCTCTACTTCCACGAGAACCAGCTGGTCTATCCAGTCCGCAAGAGCCAGGACAGAGACTTCCAGTACGGATACAACCAGGTTCTCTCATGCTTGGTGGCAGATGTGGTGGCGTTCAACTCTTCTTTCAACATGGAGTCTTTCCTGTCCTCCATTTCGTCCTTCATGAAGATGATCCCCGACCACAGGCCCAAAGACCTGGACAAGCTCATACGCCCAAAGTGTCGGGTCCTCCACTTCCCCATCCAATTCCCCCATGTCACAAGcagacCTGAAGTACTACTCAGTCCAGTAGAAGAGGAAAAGGAGGGACTTCTCAGTCTCAGCTCCCCTCCGGCTGCCATCCTGGATCAGAGGGAAGGCACCGGGCAGGCCGAGGCTCCTTCTCACCCCAGGGAAGAGCGAGGGCCtgggggagggaaggaagagggggatggaggaggagaagagagccaCGTCAGACCTCTTCATATCGTCTGGCCTCATAGGTGGGAACACGACAAAGACCCCGAGCTCTTCTTCAAGATGCTGCTGAAGCTGAAAGAGAGAGGCCTGGGCTTTcaactgtctgtcctgggggagACCTTCACTGacgtaccagACATCTTTGCAGAAGCCAGAGTGGACCTGAATGCCCATGTCCTCCACTGGGGGTTCATGCCCAGTAAAGAGGACTACCTCCATGTCCTCTGCCAGGCAGATGTGGTGGTCTCCACAGCCAAGCATGAGTTTTTTGGAGTGGCCATGCTAGAAGCTGTTCATTGTGGCTGCTATCCACTTTGCCCCAAGGCTTTGGTGTATCCTGAAATATTCCCAGAGGAGTATCTGTACTCTACACCTGAGCAGCTTTATAAGAAATTACAGGGACTGTGCAGAAGGCCATACGTGGTGAGGAGACATCACGTTAAGgtTGACACCAGTTCCTATTCCTGGGCTGCGCTGAAGGAGGACTTCAGGAGTCTGCTGGCATACAAAGAGGACCACCATCCCTGACGGACAGACTACAACTGGGCCAATGCGAGTCCGAGGATCTGCTCAGAAGTGGGCACACTTAGTTCACTCGATTAGTGGCAGAATGAGATGGATTTAAAGGTTGATGGAAAGTCTGCAGCgtagcgagggagggagagtctCAAGGGCTGTCGTCATAGCTGCCTGACATGGAGCCACGGGCAACAAACCTGTGGTGGCCTCAGACAGCCTgtccccaccacctctctctctccactcagctCCACTCTGCTCAAATCAAAGCCATGCCTTTGAGACATTGTGCCTGTTGTAAACGTCCCCATCTTCACGTGCGAGAGGGAGAGGTCTTTTATGTCTACTGTGGTTTGAATTTGAAATAAAGAGAAAAGAACGTGTAAA

Function

symbol description
gtdc1 Acts upstream of or within central nervous system development. Orthologous to human GTDC1 (glycosyltransferase like domain containing 1).

NR:

description
glycosyltransferase-like domain-containing protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974564.1 False 1707 mRNA 0.53 10 52780781 52826345
XM_036974565.1 False 1705 mRNA 0.53 10 52780781 52826346
XM_036974566.1 False 1703 mRNA 0.53 10 52780781 52826347
XM_036974569.1 False 1455 mRNA 0.53 8 52780781 52826348
XM_036974567.1 True 1554 mRNA 0.53 9 52780781 52826389

Neighbor

gene id symbol gene type direction distance location
LOC110520182 NA coding downstream 72035 52693956 ~ 52708816 (-)
LOC110520181 adprh coding downstream 88603 52686923 ~ 52692178 (-)
LOC110520175 LOC106586279 coding downstream 705105 51956334 ~ 52075676 (-)
LOC110520176 LOC106586280 coding downstream 937933 51817564 ~ 51844042 (-)
LOC100135875 LOC100135875 coding downstream 1046482 51688835 ~ 51734299 (-)
zeb2a LOC106586328 coding upstream 1394 52827783 ~ 52875770 (-)
LOC110520193 LOC106586318 coding upstream 558152 53384541 ~ 53394318 (-)
LOC110520195 LOC106586316 coding upstream 711288 53537677 ~ 53562438 (-)
ubxd2 ubxd2 coding upstream 834711 53661100 ~ 53663978 (-)
LOC110520198 LOC106586311 coding upstream 845376 53671765 ~ 53746869 (-)
G272384 NA non-coding downstream 4247 52775593 ~ 52776534 (-)
G272412 NA non-coding downstream 7491 52773086 ~ 52773290 (-)
G272408 NA non-coding downstream 10238 52770332 ~ 52770543 (-)
G271968 NA non-coding downstream 98148 52675119 ~ 52682633 (-)
G272445 NA non-coding upstream 51369 52877758 ~ 52878101 (-)
G272446 NA non-coding upstream 51897 52878286 ~ 52878572 (-)
G272461 NA non-coding upstream 69008 52895397 ~ 52896059 (-)
G272463 NA non-coding upstream 71543 52897932 ~ 52898246 (-)
G272464 NA non-coding upstream 71993 52898382 ~ 52898611 (-)
il1rl1 il1rl1 other downstream 1180551 51596933 ~ 51619476 (-)
fgf9 NA other downstream 1306642 51471899 ~ 51478510 (-)
LOC110520160 LOC106586095 other downstream 1651471 51126600 ~ 51130404 (-)
LOC110520139 LOC106586251 other downstream 2337909 50440201 ~ 50442930 (-)
G272713 LOC106586324 other upstream 423537 53249926 ~ 53251084 (-)
G274344 LOC106586294 other upstream 1853529 54679918 ~ 54682805 (-)
LOC110520227 plekhm3 other upstream 2277105 55068639 ~ 55122013 (-)
G275250 NA other upstream 2583754 55410143 ~ 55411487 (-)
si:dkey-91i10.3 LOC106586420 other upstream 4444393 57270782 ~ 57297762 (-)

Expression


Co-expression Network