LOC110520190 (LOC106586322)


Basic Information

Item Value
gene id LOC110520190
gene name LOC106586322
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53291284 ~ 53339392 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597339.2
TTCCCGGGTCCCGCTGCGTCTGCTGCCCTGTCAACCACTCCGAGACGAGGCAACATGGGTCATACACCGAAGTTTTAGGCGACGAAAAAGATAACTACCTCACCATTTTCAACTAAATCCAGAAAGAAACTGACCAAACATTGCCATAGGTTGCTGATAGACTGTGATGATGTCATTCTCCATGGCCCTGCACCTCACCGCTGTTATCCAACTCCTGGTGCTGGTGGCCATATGTGACCAGGTTACAGCTGATCGCATCAACTTCTACAACGTCAAACCACCTGTGGAAGCCACTCCATTCCCTAAGAGTTTTAAGTGCTTCACCTGCGAGCAAGCTGCAGACAACTACAACTGTAACCGCTGGGCTGAGGACAAGTGGTGTCCACAGAATACACAGTTCTGTATGACAGTGCACCACTTCACCAGTCATGGCAAGACCAAGTTTGTGACCAAAAAGTGTGCTGCCAGGGAGGTGTGTCATGCTTCAGGCTGTAGACATCACAGGGACATGGGTCACACAGAGTGTGTGTCGTGCTGTGAGGGTATGATCTGCAACGTGGAGGTCCCCACCAACCACACCAATGCTGTGTTTGCCATGAGGCAGCAGGCTTATAACTCAGCCCCACCCCAGGCCCCTGTGAGGACAGCGTGGGGCTGCTGCTGGATGACATTACTCACCACCCTGGGCCTGGGGTTGACCAGACTGGTCCTACTGTGACACTGCTGTCCCTCAGAGCATGTCCCTATAGAGGGGACCAGACTATACCAGAGCAGCATGTTCCTCTGAACATGGAGGATGTGTGTTGTTACAAGTGTGGTGATAATCTGTGTTAAAGATGTCACATAGATCAATCGAACAATCACGAAGGACTACAGCAGTGTCCTAATGAATGATGCTTGGTTTGTTAACATTGGTTGCATCTACATAAGCCAATGGGACTGGAGAAAGCATCCATGGAATCAATAGAATTGGACAAAGACCAATGGTCAGTTGATCTATAAAATTGGATGTAGCTTGCCAGCTAGTGGAGTTGGCAAGCAGAGGAGTTAACCGGAAGGGTTCAAGGAGGATCATGCCCATCAtaagtctaatgtccattgctgatTCAAAGATGGATGCCCAGTGACCGATCCTTCAATCAGCCCTGGCCAGAGCCCCAAACTACTATACGGAGCATGCCGAATGAGAGGCTGGAACCGGGAGACTTTAAATGTTCCACAGAACATTCCCTAGGATTATTCATGGTCCTGGGAATGTTAATCGTGTGTTCTCTGTGGGATTTTGCAGCACTGCAGTGCACACATGGACCAGGAATGACTGGAGACATAGGCATGCCCCATGCCCATTGGATCAGGGAGAACTTTGGGAGATGATGATAGACATGGAATCTGGCGTAAATGTATTAGTACTTGATCCATAGTATGGCACAAAATGAAAGCATTTTGCACTTGAATGTTTTGTTAAGAAATATTGTTACTTGTATTTTTTTTAGCATAACTTGTGAATATCCTTAAATAAAATGGAAAGAACTATACTTTTGGAAAGATGTACTTTTCTATATATTTAGCTTTTCTCGACAACATGCCTTAATGACATTACAGTGTTACTTTTACCAGAATGTATTATCTCTTTGCAGAAGTCCCATGTCTGTGGCCATATGACAACATGGTGCTCATTATGACCGTTATGTAGTTCCTAGCATGTGAGACTGATTCACCAAGCTGTGTGCTGGCCCTGTTTCTGCCTCATGTTGTGAAGAGGTCTTATCACATCTGTTCTTAGATCTGGAAATCTCAGAAAAATATGGAATATGATATTTATTTACATAAATAGTTGCAATGTCTGGTGATGTAATATGGCATAAAACTATCATTGCCATGAAGTTGTGAGAGATTAACGACAAAGGATTTTATGACTTTCCATGTCAGCAACATGAAAAAGTTGACCTTTTTAAAGGTTAACCTTCTTATCGTGTTTTATTGATATTTAATGAATATGTCAAGAAACCATGGAATGTTCAGTTATTTATGGCATATTAtagggtgggtctaatcctggatgctgattggttaaaaccgagTTCCAGCCGGTGTCTAATCCCCATGTTACCACCCACTAAGGCTAcattgaaatgcctatttactgtTCCATCTCACTGCTTAATCCACCGTcgcatcagcccagccaggcaatttaggAACTTGATCTCTactgtaaaaagcatctagacattatctcccatttTCTTTTAGACTATCATTTCGTTTTCAACAGTGGCGGCTTGTATAAAATGTGCTGTCTGTCTCCCTGACATCTGTAACGTTGTTTCAATATGGAAATTCGAACTTCAACTGTTTCATAGTTTGAAAGTGCTGGGACGAGATGGACAGGCAGGCAActtttctcagccagttgaaatcatgaatcagcataatgTTTATGGATACATACAAATACATTTCAATAGAAAAACAGGTCAAACAAAATTAAACACAGCTAGTTTGCTGTTTTTCCAGATGCCGTTTGAAGTGATTGCGTTAGTGTAGTTGTCTAGCTCCTCTGAACTGTGTCCTGgagttgtcactagttaccacagccacaaagtaacaCTTGGCTGTTTCATAAATAATTATTGGAACAAAAAGCTTTTTGGTCATAATTTAAGTTTAGGGTAAGGCATAACGTTAGCAGTGTTGTTAAGGCTATGGCTGAGGTTTggtttcaaatcagattttaagaagagaaGAACGAGTAGAAACAggcagggtttatgactttgtggctgtggtaactagtgacaaccgtGTCCTGGCAAGAGATCAAATTGTCTATGCCGGGCAAAATCGTgtatcattagctcattgttatggatgtatccaaataaatgtcactagaaacagcttaaacaaatgcaaatgcagttCATTTCTGTTATTCTGGCTGTACTGTTTGATGTGACTGTGTTAGTGGAAGttggctagcaagcaagggataagaacgtttgCCAGACAGCATGGcgatggaacatttagaacgaacgactggctCGCGTCCATAGATATCGAACAAAAAGACTAAACTACTGGGTCTCTGGCAACCTAACCGATAGAATGAACGGCCAGCCGGCTAGGGttgcaaccctagatttgtgtcagggCTATATTTTGTGGAAgcatgaaatagtatgaatataTTCATACAAATTATGtttttatgaaaatatgtcaatctt
>XM_036974575.1
GGCAGGGAAGGAAATGACTTATAGTAAACCAGGGATCCATCTAGTCAGTCACCCTCACCTGAAAGGATCTGTTAAACAGGGCTTTTACTGATCTCTGTTGATACATACATGTGGATTAGATTTCACTTCATTTGAACTTTAGGAGGTTGCTGATAGACTGTGATGATGTCATTCTCCATGGCCCTGCACCTCACCGCTGTTATCCAACTCCTGGTGCTGGTGGCCATATGTGACCAGGTTACAGCTGATCGCATCAACTTCTACAACGTCAAACCACCTGTGGAAGCCACTCCATTCCCTAAGAGTTTTAAGTGCTTCACCTGCGAGCAAGCTGCAGACAACTACAACTGTAACCGCTGGGCTGAGGACAAGTGGTGTCCACAGAATACACAGTTCTGTATGACAGTGCACCACTTCACCAGTCATGGCAAGACCAAGTTTGTGACCAAAAAGTGTGCTGCCAGGGAGGTGTGTCATGCTTCAGGCTGTAGACATCACAGGGACATGGGTCACACAGAGTGTGTGTCGTGCTGTGAGGGTATGATCTGCAACGTGGAGGTCCCCACCAACCACACCAATGCTGTGTTTGCCATGAGGCAGCAGGCTTATAACTCAGCCCCACCCCAGGCCCCTGTGAGGACAGCGTGGGGCTGCTGCTGGATGACATTACTCACCACCCTGGGCCTGGGGTTGACCAGACTGGTCCTACTGTGACACTGCTGTCCCTCAGAGCATGTCCCTATAGAGGGGACCAGACTATACCAGAGCAGCATGTTCCTCTGAACATGGAGGATGTGTGTTGTTACAAGTGTGGTGATAATCTGTGTTAAAGATGTCACATAGATCAATCGAACAATCACGAAGGACTACAGCAGTGTCCTAATGAATGATGCTTGGTTTGTTAACATTGGTTGCATCTACATAAGCCAATGGGACTGGAGAAAGCATCCATGGAATCAATAGAATTGGACAAAGACCAATGGTCAGTTGATCTATAAAATTGGATGTAGCTTGCCAGCTAGTGGAGTTGGCAAGCAGAGGAGTTAACCGGAAGGGTTCAAGGAGGATCATGCCCATCAtaagtctaatgtccattgctgatTCAAAGATGGATGCCCAGTGACCGATCCTTCAATCAGCCCTGGCCAGAGCCCCAAACTACTATACGGAGCATGCCGAATGAGAGGCTGGAACCGGGAGACTTTAAATGTTCCACAGAACATTCCCTAGGATTATTCATGGTCCTGGGAATGTTAATCGTGTGTTCTCTGTGGGATTTTGCAGCACTGCAGTGCACACATGGACCAGGAATGACTGGAGACATAGGCATGCCCCATGCCCATTGGATCAGGGAGAACTTTGGGAGATGATGATAGACATGGAATCTGGCGTAAATGTATTAGTACTTGATCCATAGTATGGCACAAAATGAAAGCATTTTGCACTTGAATGTTTTGTTAAGAAATATTGTTACTTGTATTTTTTTTAGCATAACTTGTGAATATCCTTAAATAAAATGGAAAGAACTATACTTTTGGAAAGATGTACTTTTCTATATATTTAGCTTTTCTCGACAACATGCCTTAATGACATTACAGTGTTACTTTTACCAGAATGTATTATCTCTTTGCAGAAGTCCCATGTCTGTGGCCATATGACAACATGGTGCTCATTATGACCGTTATGTAGTTCCTAGCATGTGAGACTGATTCACCAAGCTGTGTGCTGGCCCTGTTTCTGCCTCATGTTGTGAAGAGGTCTTATCACATCTGTTCTTAGATCTGGAAATCTCAGAAAAATATGGAATATGATATTTATTTACATAAATAGTTGCAATGTCTGGTGATGTAATATGGCATAAAACTATCATTGCCATGAAGTTGTGAGAGATTAACGACAAAGGATTTTATGACTTTCCATGTCAGCAACATGAAAAAGTTGACCTTTTTAAAGGTTAACCTTCTTATCGTGTTTTATTGATATTTAATGAATATGTCAAGAAACCATGGAATGTTCAGTTATTTATGGCATATTAtagggtgggtctaatcctggatgctgattggttaaaaccgagTTCCAGCCGGTGTCTAATCCCCATGTTACCACCCACTAAGGCTAcattgaaatgcctatttactgtTCCATCTCACTGCTTAATCCACCGTcgcatcagcccagccaggcaatttaggAACTTGATCTCTactgtaaaaagcatctagacattatctcccatttTCTTTTAGACTATCATTTCGTTTTCAACAGTGGCGGCTTGTATAAAATGTGCTGTCTGTCTCCCTGACATCTGTAACGTTGTTTCAATATGGAAATTCGAACTTCAACTGTTTCATAGTTTGAAAGTGCTGGGACGAGATGGACAGGCAGGCAActtttctcagccagttgaaatcatgaatcagcataatgTTTATGGATACATACAAATACATTTCAATAGAAAAACAGGTCAAACAAAATTAAACACAGCTAGTTTGCTGTTTTTCCAGATGCCGTTTGAAGTGATTGCGTTAGTGTAGTTGTCTAGCTCCTCTGAACTGTGTCCTGgagttgtcactagttaccacagccacaaagtaacaCTTGGCTGTTTCATAAATAATTATTGGAACAAAAAGCTTTTTGGTCATAATTTAAGTTTAGGGTAAGGCATAACGTTAGCAGTGTTGTTAAGGCTATGGCTGAGGTTTggtttcaaatcagattttaagaagagaaGAACGAGTAGAAACAggcagggtttatgactttgtggctgtggtaactagtgacaaccgtGTCCTGGCAAGAGATCAAATTGTCTATGCCGGGCAAAATCGTgtatcattagctcattgttatggatgtatccaaataaatgtcactagaaacagcttaaacaaatgcaaatgcagttCATTTCTGTTATTCTGGCTGTACTGTTTGATGTGACTGTGTTAGTGGAAGttggctagcaagcaagggataagaacgtttgCCAGACAGCATGGcgatggaacatttagaacgaacgactggctCGCGTCCATAGATATCGAACAAAAAGACTAAACTACTGGGTCTCTGGCAACCTAACCGATAGAATGAACGGCCAGCCGGCTAGGGttgcaaccctagatttgtgtcagggCTATATTTTGTGGAAgcatgaaatagtatgaatataTTCATACAAATTATGtttttatgaaaatatgtcaatct
>TU309244
GAGGCAACATGGGTCATACACCGAAGTTTTAGGCGACGAAAAAGATAACTACCTCACCATTTTCAACTAAATCCAGAAAGAAACTGACCAAACATTGCCATAGGTTGCTGATAGACTGTGATGATGTCATTCTCCATGGCCCTGCACCTCACCGCTGTTATCCAACTCCTGGTGCTGGTGGCCATATGTGACCAGGTTACAGCTGATCGCATCAACTTCTACAACGTCAAACCACCTGTGGAAGCCACTCCATTCCCTAAGAGTTTTAAGTGCTTCACCTGCGAGCAAGCTGCAGACAACTACAACTGTAACCGCTGGGCTGAGGACAAGTGGTGTCCACAGAATACACAGTTCTGTATGACAGTGCACCACTTCACCAGTCATGGCAAGACCAAGTTTGTGACCAAAAAGTGTGCTGCCAGGGAGGTGTGTCATGCTTCAGGCTGTAGACATCACAGGGACATGGGTCACACAG
>TU309243
TCTATAAAATTGGATGTAGCTTGCCAGCTAGTGGAGTTGGCAAGCAGAGGAGTTAACCGGAAGGGTTCAAGGAGGATCATGCCCATCAtaagtctaatgtccattgctgatTCAAAGATGGATGCCCAGTGACCGATCCTTCAATCAGCCCTGGCCAGAGCCCCAAACTACTATACGGAGCATGCCGAATGAGAGGCTGGAACCGGGAGACTTTAAATGTTCCACAGAACATTCCCTAGGATTATTCATGGTCCTGGGAATGTTAATCGTGTGTTCTCTGTGGGATTTTGCAGCACTGCAGTGCACACATGGACCAGGAATGACTGGAGACATAGGCATGCCCCATGCCCATTGGATCAGGGAGAACTTTGGGAGATGATGATAGACATGGAATCTGGCGTAAATGTATTAGTACTTGATCCATAGTATGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597339.2 False 3233 mRNA 0.43 5 53291284 53339392
XM_036974575.1 False 3228 mRNA 0.42 5 53319295 53339391
TU309244 False 475 TUCP 0.49 4 53291330 53336526
TU309243 True 432 lncRNA 0.47 1 53337155 53337586

Neighbor

gene id symbol gene type direction distance location
kif5c LOC106586321 coding upstream 2304 53255416 ~ 53288980 (+)
LOC110520189 LOC106586324 coding upstream 37791 53235543 ~ 53253493 (+)
LOC110520187 LOC106586325 coding upstream 56257 53174264 ~ 53235027 (+)
acvr2aa LOC106586327 coding upstream 118858 53124656 ~ 53172428 (+)
LOC110520185 NA coding upstream 348511 52874928 ~ 52942773 (+)
LOC110520191 LOC106586320 coding downstream 8264 53347656 ~ 53375674 (+)
LOC110520194 LOC106586317 coding downstream 96636 53436028 ~ 53449882 (+)
LOC110520196 NA coding downstream 260780 53600172 ~ 53629285 (+)
parp14rs3 LOC106586314 coding downstream 292377 53631769 ~ 53646425 (+)
LOC110520200 LOC106586309 coding downstream 526076 53865468 ~ 53869538 (+)
G272308 NA non-coding upstream 74256 53216713 ~ 53217028 (+)
G272290 NA non-coding upstream 105507 53185564 ~ 53185777 (+)
G272283 NA non-coding upstream 118113 53172836 ~ 53173171 (+)
G272258 NA non-coding upstream 171789 53119173 ~ 53119495 (+)
G272257 NA non-coding upstream 172919 53117965 ~ 53118365 (+)
G272837 NA non-coding downstream 40018 53379410 ~ 53379650 (+)
G272867 NA non-coding downstream 84478 53423870 ~ 53478570 (+)
G272982 NA non-coding downstream 247260 53586652 ~ 53586931 (+)
G272984 NA non-coding downstream 250273 53589665 ~ 53589865 (+)
LOC110520169 il1rl1 other upstream 1712601 51573980 ~ 51582567 (+)
G269291 rap2a other upstream 2391007 50898589 ~ 50900277 (+)
LOC110520146 ino80d other upstream 2686468 50601983 ~ 50618761 (+)
G272965 NA other downstream 309433 53648825 ~ 53652431 (+)
G273004 LOC106586313 other downstream 318069 53657461 ~ 53658683 (+)
G273094 LOC106586310 other downstream 501872 53841264 ~ 53841617 (+)
G274592 NA other downstream 1535007 54874399 ~ 54875115 (+)
LOC110520231 dbr1 other downstream 2035154 55371759 ~ 55375526 (+)
LOC110520190 LOC106586322 other upstream 629 53291284 ~ 53339392 (+)

Expression


Co-expression Network