LOC110520193 (LOC106586318)


Basic Information

Item Value
gene id LOC110520193
gene name LOC106586318
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53384541 ~ 53394318 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597342.2
TATCCACGTAAGCGCATGTGCACAACGAAAGGTGAAGCAGATAGATGGCATTCGAGCTAAAGTTAGGTCAAGGATAAACACAGATAAGACCTATTGATATTTTCAACGTATTTTATTGATTCATGTTTGCAAGAAGGGGATATTCTTCAACGCATTTAATTAAGTTTTGCAAGTGAATAACAGAAGAGGGAGAGGCCCAACAGGATGGCCAGTGTGCTCTGTAGCAGAGCCAGGCTGGTGACTTACCTGCCAGCTCTTCATGTACTGGTCCGGCGGATTGCTGGAACCAACCAGAGAACATTCTCTGGTGCTGGATCATCTGGCTCTGATGAGCCTCGTGTAGCCACCACACCCCCTGACCTTGGACCCAGGACAGTTTGGCCAGATGATAGTATGGGTCCGTTCGGGCCTCAGGACCAGCGCTTCCAACTGCCAGGTAACTCAGGCTTTGACTGCCACCTGGAAGGCACAGCAGAACAGAAGATTAATGGCCCAGTCCACCGGACAGTCCCCGACGTGCTCACTGCTCCCTCCAGCTGCGAGAGGCATGAGTTCATTCTTGCCCAATTTGTTGGCGAGTTCCAAGGGAAAGAGGCTGATCCCCCGGAACAAATAGTCAACAGAGCAGAACAGTACTTTGATAACTCCAATGTAGAGTGTGCGATACAGTCTTGCCCTGAGCTGCTGAAGAAAGATTTTGAGTCAATGTTCCCTGAGGCCCCTAACAATGGCATGACGGTTGTCACGGTGACCCAGAAGACTCAGAACGACATGACGGCGTGGTGTGAGGAGGTGGACAAAGAGAGGGAGTTGATGCTAGACAAATTTGTTGCCGGTGCCAAGGAAATCTGTTATGCCCTGAGGACAGAAGGCTTCTGGGCTGACTTCATAGACCCATCCTCAGGCCTGGCATTCTTTGGGTCGTACACCAACAACACACTGTTTGAGACCGACGAGAGGTACCGTAACCTGGGCTTCAGCATCGAGGACTTGGGCTGCTGCAAAGTCATCCGCCATGCATTGTGGGGGACGCATGTTTTCGTGGGGACAGTTTTCACCAGCGCACCTCCCCATAGCCTTATCATGAAGAAGCTGCAAGGGAACTAAACCTGAATGATGGGAGAGTGTCTGGTATGTGGTTGCTATTAAACGTTGACGTGTCAAGGCTCTTTACACAGCCCTTAACTACTATTTGCTTTTTCTTTGTACTTCACATTTGTATAGAAACCTTCAAAATAGTATGGTACACCGATATTGTGAAATACCCACAACCATGATCCCTGACAGTTTTACCAtgataatatatttattttcagcATCTCTATTCTGTTCCTTTAGTGTATTGTGGTTGGCCTGATTGAAAAGGGTCTCTCTTGCAAAATAGATTTTTTATCTCAATGAGATTTAGCTGTATAAATAAAAGTTCAATTGAATGTGAAATAGAAGGTGGATGAAAAATCCACTCACATTGTCTTTGGGTATTTTTTTCTTTTCATGATGGGGTAAGTGACACTGCTTCTTCAAAGTCCAATATCTTGGACTTGACTGCtgacatataaaatatattgtgacTGTATTAACAATGGACAAAATATAGTTTGAGTGGATTTCCCCATTTAAGGGTGGATTGACTCTGCCCAGATGAGATTTTCATAGTAGACTCAATCCTGCAGCTAGATAAGAAAAACATGGGGACCTGCTGTTGCCCTTGACTTGGGTTGATAAACCCCCATTTTTATCAAAAGGTAAGAATTTAGCTTTTCTGATGTCATGGGGTTAATCTCGAGCTCTTATTTGATCCGCGTTGCCTTCAGAATAGAGACCTCATGTCTGGTTCACAGGTCCTGAGATCCAGTTAACCCCTTGAATCCTTGAATATTGTACTTGTGACCGTAATCAATTCACTTGTCTAGAAGTGGGCGGCAGCACTTGTCTCTGTCACTTTACAAGATGAACTGTTTTTAAAAGGGTCTGTGATTCTTGTGGCAGCTTTTGTCCTGAGGTCCACACATTAAATGCAATAAAACACA

Function

NR:

description
methylmalonic aciduria and homocystinuria type D protein, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597342.2 True 2030 mRNA 0.45 8 53384541 53394318

Neighbor

gene id symbol gene type direction distance location
zeb2a LOC106586328 coding downstream 508771 52827783 ~ 52875770 (-)
gtdc1 gtdc1 coding downstream 558152 52780781 ~ 52826389 (-)
LOC110520182 NA coding downstream 675795 52693956 ~ 52708816 (-)
LOC110520181 adprh coding downstream 692363 52686923 ~ 52692178 (-)
LOC110520175 LOC106586279 coding downstream 1308865 51956334 ~ 52075676 (-)
LOC110520195 LOC106586316 coding upstream 143359 53537677 ~ 53562438 (-)
ubxd2 ubxd2 coding upstream 266782 53661100 ~ 53663978 (-)
LOC110520198 LOC106586311 coding upstream 277447 53671765 ~ 53746869 (-)
rab3gap1 LOC106586310 coding upstream 422793 53817111 ~ 53864985 (-)
LOC110520203 LOC106586308 coding upstream 489380 53883698 ~ 53893788 (-)
G272832 NA non-coding downstream 9020 53373540 ~ 53375521 (-)
G272774 NA non-coding downstream 46871 53336680 ~ 53337670 (-)
G272729 NA non-coding downstream 60204 53271553 ~ 53324337 (-)
G272741 NA non-coding downstream 93461 53288343 ~ 53291080 (-)
G272659 NA non-coding downstream 165031 53218853 ~ 53219510 (-)
G273298 NA non-coding upstream 2761 53397079 ~ 53397297 (-)
G273454 NA non-coding upstream 197121 53591439 ~ 53591680 (-)
G273464 NA non-coding upstream 207760 53602078 ~ 53602367 (-)
G273493 LOC106586314 non-coding upstream 251615 53645933 ~ 53651951 (-)
G273523 NA non-coding upstream 372042 53766360 ~ 53766580 (-)
G272713 LOC106586324 other downstream 133457 53249926 ~ 53251084 (-)
il1rl1 il1rl1 other downstream 1784311 51596933 ~ 51619476 (-)
fgf9 NA other downstream 1910402 51471899 ~ 51478510 (-)
LOC110520160 LOC106586095 other downstream 2255231 51126600 ~ 51130404 (-)
G274344 LOC106586294 other upstream 1285600 54679918 ~ 54682805 (-)
LOC110520227 plekhm3 other upstream 1709176 55068639 ~ 55122013 (-)
G275250 NA other upstream 2015825 55410143 ~ 55411487 (-)
si:dkey-91i10.3 LOC106586420 other upstream 3876464 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 4008666 57402984 ~ 57403575 (-)

Expression


Co-expression Network