LOC110520194 (LOC106586317)


Basic Information

Item Value
gene id LOC110520194
gene name LOC106586317
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53436028 ~ 53449882 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597343.2
TCAAACTCCTTCAAACTTACACTGTCTGTGGACCGTTGCGTCTCATAACTGGTCTGGAGCTCTCGTATACCGGACTGGCTACGACCCTTGGAATTCACAGTATTTCACTCTCCAAAGGGATCATGTTAATTATTTAAAGATTTTCTATTTTGACAATTTCTAAATTACTGTGCCGTCGAGACGTTCTCATTTCAGAATAGATTCTTCTGGGCAGCTGACTGATGCAGTCCGCTCATACATTTTGGGAATCATACAACCTTCGGATTTTCTATTGATCCCGACTTCATTCTTCTTTATATTTTATGGAAAGAAGGCGAGCCATATCCCACACCGTTCCAAAATGGATTTAAATCCAAGCATAAAATGTAAAATAGTGGTCGTTGGGGATAGTGAATGTGGAAAAACCGCTCTACTAAATGTGTTTGCAAAAGATTCCTTTCCAGAGGGCTACATTCCCACGGTGTTTGAGAACTACACGGCCAGTTTTGAAATCGATACGCAGAGAGTTGAACTCCGTCTGTGGGACACTTCAGGCTCTGCATACTATGACAATGTGAGGCCTCTCTCCTACCCTGATGCTGATGCAGTCCTCATCTGTTTTGACATCAGTAGACCAGACACCCTGGACAGTGTACTGAAGAAGTGGAAAGGAGAGATTCAGGAATTCTGTCCCAACACCAAGATGCTGCTGGTGGGATGCAAGTCAGACCTCCGCACAGACCTCTTTACCAAATCTAACAGTGGACATACGCCAGTGTCCTATGATCAGggctccaacatggcCAAGCAGATCAGTGCTCCCTATATCGAGTGTTCATCCCTGCAGTCTGAGAACAGCGTCAGAGACATCTTCCACGTGGCCACGCTGGCCTGCGTCAACAAGAGCAACAAGAACGTCAAATGCAACAAGCCCTCCAGGAGCACCAAGAGGATCTCACACAGCAGACCTGACCTGCCCACAGTGGTGTCAGACTTCCAGAAGACCAAAGCCAAGACCTGTGCTGTTATGTGACTGCATGGGCTGTGATTGGAATCTTGGATTGAAAGACAATGTTGAAGGACATTATAATGAGCATATAATCTTTGGATAACTATGAAGGGCTTTGTGCACTATTAGAAGACTATCGATCTCCACAGCTATTGCCAACTGAATGAGAGATGGTGTTTAGGTAGCTGCAGCAACTATACTGTGGTATGTCATGTACGTTATATGTGGTTGTACCCTGCCTTTTTACAAGTTAAATGAGGCATAACACCAAGTAGTCAATGTACTTACACGAACTGGATATATTCACCTGGAGTTAACTGGGATTTATCATTCAGAACTAAGAACTGACTGGTGTTAGTGACTTGATGCCACAGAATCTGAGAAAATGTATCTTGGACTTTGTTCATGAACTCTCTGGGGAATTCCACTGAAATGACACAAAAGAGCTGTACTTAAATTCTAGGTTTGAACTGGAATACCATGGTGGAGAATGCAGGCAGGGTTGTAGAATCCTGATGATTGAAAAGCTTCATTTTCAGAAGTGTTCTAGGTAGCAGTGTTTCGAATCTTATGTTCTTAAAAGCAAGCAAAATAGTTTGTGGGAGAGACAGTGAACGATATGAGATACGTTTGTGTGTAATGTTCTGAGAAGCACAGATGATAACCAGGATACTGTTACCCGTTCTCCACTCCATGCTGTTGAAGGCTCCTGAATGTCATGTGACCTGTGTCATCCTTTAGGCTACTCCTTCCTTTCTCATCATTTGTTTTCTAAATCTGTTAATTCTAAATTACTCTGAGATTTATTctaaaacaatgaaaaaatagTTCATTTCAGAACTGTCAATTTCCCATGtttaaatgtactgtagtcatgcAAATGTAGTGAAGGTTAGATTTGATGCTTATAAATGTATAAGCCCATCA

Function

NR:

description
rho-related GTP-binding protein RhoE-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597343.2 True 1915 mRNA 0.42 5 53436028 53449882

Neighbor

gene id symbol gene type direction distance location
LOC110520191 LOC106586320 coding upstream 60354 53347656 ~ 53375674 (+)
LOC110520190 LOC106586322 coding upstream 96636 53291284 ~ 53339392 (+)
kif5c LOC106586321 coding upstream 147048 53255416 ~ 53288980 (+)
LOC110520189 LOC106586324 coding upstream 182535 53235543 ~ 53253493 (+)
LOC110520187 LOC106586325 coding upstream 201001 53174264 ~ 53235027 (+)
LOC110520196 NA coding downstream 150290 53600172 ~ 53629285 (+)
parp14rs3 LOC106586314 coding downstream 181887 53631769 ~ 53646425 (+)
LOC110520200 LOC106586309 coding downstream 415586 53865468 ~ 53869538 (+)
LOC110520202 LOC106586307 coding downstream 420868 53870750 ~ 53883922 (+)
LOC110520204 LOC106586306 coding downstream 454428 53904310 ~ 53990481 (+)
G272837 NA non-coding upstream 56378 53379410 ~ 53379650 (+)
G272308 NA non-coding upstream 219000 53216713 ~ 53217028 (+)
G272290 NA non-coding upstream 250251 53185564 ~ 53185777 (+)
G272982 NA non-coding downstream 136770 53586652 ~ 53586931 (+)
G272984 NA non-coding downstream 139783 53589665 ~ 53589865 (+)
G272988 NA non-coding downstream 147142 53597024 ~ 53597278 (+)
G272989 NA non-coding downstream 147457 53597339 ~ 53597620 (+)
G272966 LOC106586311 non-coding downstream 153254 53603136 ~ 53674498 (+)
acvr2aa LOC106586327 other upstream 263600 53124656 ~ 53172428 (+)
LOC110520169 il1rl1 other upstream 1857345 51573980 ~ 51582567 (+)
G269291 rap2a other upstream 2535751 50898589 ~ 50900277 (+)
G272965 NA other downstream 198943 53648825 ~ 53652431 (+)
G273004 LOC106586313 other downstream 207579 53657461 ~ 53658683 (+)
G273094 LOC106586310 other downstream 391382 53841264 ~ 53841617 (+)
G274592 NA other downstream 1424517 54874399 ~ 54875115 (+)
LOC110520231 dbr1 other downstream 1924664 55371759 ~ 55375526 (+)

Expression


Co-expression Network