LOC110520195 (LOC106586316)


Basic Information

Item Value
gene id LOC110520195
gene name LOC106586316
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53537677 ~ 53562438 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597344.2
GCACGATCAACAGTAGTTTACAGAGTAGTTTACCGGTGTGTATAGGACGTTGCTGACAATATCAACAGTAGTTTACTGGTGAATGGGGGACGCAGCTAACAATATCACAGGACAGTAGTGATTGTTATGGGGATCTGATTTTGGTGCGGAGCTTATCTATAGACATTTAGAAAAATAAATGAAGGATACAGGATCTGTTCAAAAGCTTTCACCGAAATCCGAGATGGATCCTAACCAGAGCGTGAAGTGTAAAATCGTTGTCGTTGGGGACAGCCAGTGTGGAAAAACTGCTCTACTTCACGTCTTTGCAAAAGATTGCTTTCCAGAGAACTATGTCCCAACAGTGTTTGAGAACTACACAGCCAGTTTTGAAATCGACACGCAAAGAATAGAACTCAGTCTCTGGGACACTTCAGGATCTCCGTACTATGACAATGTGCGACCGCTCTCCTACCCAGACTCTGATGCAGTCCTCATCTGCTTTGATATCAGCAGACCAGACACCCTGGACAGTGTACTGAAGAAGTGGCGAGTAGAGATCCAGGAGTTTTGTCCCAACACCAAGATTCTGCTGGTGGGATGCAAGTCAGACCTCCGCACAGACCTCACCACACTGGTGGAACTGTCCAATCACAGACAGACACCCGTGTCATATGATCAGggctccaacatggcCAAGCAGATCAGTGCTCCCTACATCGAGTGTTCATCCCTGCAGTCTGAGAACAGCGTCAGAGACATCTTCCACGTGGCCACGCTTGCGTGCGTCAACAAGAGCAACAAGAACGTCAAACGCAACAAATCCTCCAGGGGCACCAAGAGGATCTCGCACATGCCCAGTAGGCCCGAACTCACCGCTGTCACAGCAGACCTGCGTAAAGACAAGGCCAAGAGCTGTACAATAATGTGATTGGTTGGGGTAGGGAGACTGACTGTGGACTGTGGGAGGAGCAGGCAGGTGATGGGGACTGGACACTTTGCATAGAGCCCCTCCCACTCGACTCACACGCAAAGGAGTGAGAAGGCGAGTTAGCGCTGCACTTTAAATCAGCTTCTCCACTGGTTTGTATTGACGCAAAATGTACAAACTTACATCAAGCTGCCCTTATTCTGTGCCATAGGAGAAGTTCACCAAGGAGACCTGAAGGAAACCGGACACTGGAGCCCATCTGAGGCTTCAGAATTGGGTTTTGGTTTATTTTTAAGGCCAAGATGGTCAACAACCCTTTGACATAAACTACAAGAAAGAGATGGAAGACATGCTGACTTCTGTCGGTCCTCTCAAGCTTTCTTTACCCCAGGAAATAATGTTTTTGGTCCAGCAATTACATCATAACCTTTTGGTCTGGGATCTGGACAGGAAAAGAGCTAAAGTGGTATCAGGTTTTAATTTTATCTTCAGAAAGATATGAGAAGTGGTATGGTGGTGGATTCACCACTGAGTGACAAGATTGTTGTTTGGAAGCAAGAGACTGCTGCTGTGTTCTGCTACAGTAAAATGGATCAAGAAGACAAATGGATCTCTTGCACTGGCCCCTGGTTCTGGCACTTACAGACAAAGAAGTTACTAAAGGACAGAAACACTGGTTCGTTCACATTGCCCatcttctccccctttctcttttgtTACTGCCTTTATGAGTTTGCCAAATGGGATGTTTGTTATAAGCTGTTGCACACTGTTACGAAAGATCTGAAAGCCTTTTTACtatgttttgctcctttgcataTCGTTCTAGTGCTGTTTTTAAACCTCAGCATAGTCTGAACCCTTTGTTTTGCTGTTTTTATCATTTACAACCAAAAAAGCTTGACAGCGTTGAAATCGCTCACAAAGTAGCTCTCTGGCAACGACTAATGTGATAAGCTGTGTAACGACCATGACCAATGATTTTGAAGGATGTGCTACAGTATCTCTGAGGACATATCCTACACCCCTTCTCTTCTGTCACACTTCTGTCACTGGGATGACTGCTCTCCCTGCTCTTCTCTCCCTGGCATCGCAAGAGTTACGGGCAGCACAGCTGCCCAGTACATGTGGTGCACAGTGCACACCCATGCCAAGTTTAATTAAGGGCTTAAACATGGCCAGTGCTGATCAAACCACTGAGCTTCGGTTATCGGCCCAGAAGACCATCATTGCACAGATCTTTTCAAGGATGTCCTCGGCTATGCAATGTGAGGATTCTTATCGAACTCCAAGAAGGACAATGGTCTGTGAAGACAAGTCTAGTTATCAATGTTTGCTGGTTCATGACCTGTACAGTGCTGTTATTGTTTTGGGGCGGCAgtagttagcctagtggttagagcattggactagtaaccgaaaggttgcaaggtcagctcggggatttgaaaaggtacaaatctgtcgttctgcctctgaacaggcagttaacccactgttcctaggccatcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaataaaaaataaatgtgtgtgtggagCGCTAGGGCAGACTACATATTACTCACACTGTTCATCTCTGGTACAGAGGCACCACATTCGTAGCCTACTCTTGATTCAAATACAACTGTTATTTGATAATGAATGTGACCAGCACACTGGGGCAGTAGGCTAAGTCCAATAGCTAAGTAGAACTAGCCCGTAGCTATAGCTCATGGCGGCAGGTAACCttgcggttaagagcgttgggccagtaaccgaaaggtcgttGGTTCGACTCCCCAAGGTGGGGAAAAATCTGGCCTTCTGGCCTTGAGCAAGACGGTTAACCATCTGCGCCTGGGGAACAGTTGGGgatgtggatgtcgatttaaGGCAGCCGCTCCCCCATACCTCCTCTGAGGGGTttggttaaatgcagaagacgcATGATTGTTGAATGCGTTGGTGGAGAGATACCTCTCAGTTGCACAACAAGCAGTTGCTGTTAAACTAGATTTACATTTCACATCTAACAGTTACAATTTCAGTCTTCAGTTGTCTCCGCAGCATAGTAAGTACTTGGGTGTTGTTGGTGTTGAAGTCTGTTGAGCTGATTTCAGAACAGCCCCAAAAGGCAGTATATCAGCTAGCGGGTGTAGTCTTAGCTCACAGTATGAAAAAATTGTAAATTAAAGTTCAGAATGTGTTAGCTGTAGAATATCAACCCTTTTTTTTATGTTTAGTCCATTTGTATGTATGATGTTTCGACAGTATTTATTGAagttatatattttacctttttgAAAATAAAGTTCAATGTACAGTACAA

Function

NR:

description
rho-related GTP-binding protein RhoE-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07859 RND3; Rho family GTPase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597344.2 True 3269 mRNA 0.45 5 53537677 53562438

Neighbor

gene id symbol gene type direction distance location
LOC110520193 LOC106586318 coding downstream 143359 53384541 ~ 53394318 (-)
zeb2a LOC106586328 coding downstream 661907 52827783 ~ 52875770 (-)
gtdc1 gtdc1 coding downstream 711288 52780781 ~ 52826389 (-)
LOC110520182 NA coding downstream 828931 52693956 ~ 52708816 (-)
LOC110520181 adprh coding downstream 845499 52686923 ~ 52692178 (-)
ubxd2 ubxd2 coding upstream 98662 53661100 ~ 53663978 (-)
LOC110520198 LOC106586311 coding upstream 109327 53671765 ~ 53746869 (-)
rab3gap1 LOC106586310 coding upstream 254673 53817111 ~ 53864985 (-)
LOC110520203 LOC106586308 coding upstream 321260 53883698 ~ 53893788 (-)
LOC110520207 LOC106586304 coding upstream 619234 54181672 ~ 54191829 (-)
G273298 NA non-coding downstream 140380 53397079 ~ 53397297 (-)
G272832 NA non-coding downstream 162156 53373540 ~ 53375521 (-)
G272774 NA non-coding downstream 200007 53336680 ~ 53337670 (-)
G272729 NA non-coding downstream 213340 53271553 ~ 53324337 (-)
G272741 NA non-coding downstream 246597 53288343 ~ 53291080 (-)
G273454 NA non-coding upstream 29001 53591439 ~ 53591680 (-)
G273464 NA non-coding upstream 39640 53602078 ~ 53602367 (-)
G273493 LOC106586314 non-coding upstream 83495 53645933 ~ 53651951 (-)
G273523 NA non-coding upstream 203922 53766360 ~ 53766580 (-)
G273584 NA non-coding upstream 306271 53868709 ~ 53869460 (-)
G272713 LOC106586324 other downstream 286593 53249926 ~ 53251084 (-)
il1rl1 il1rl1 other downstream 1937447 51596933 ~ 51619476 (-)
fgf9 NA other downstream 2063538 51471899 ~ 51478510 (-)
LOC110520160 LOC106586095 other downstream 2408367 51126600 ~ 51130404 (-)
G274344 LOC106586294 other upstream 1117480 54679918 ~ 54682805 (-)
LOC110520227 plekhm3 other upstream 1541056 55068639 ~ 55122013 (-)
G275250 NA other upstream 1847705 55410143 ~ 55411487 (-)
si:dkey-91i10.3 LOC106586420 other upstream 3708344 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 3840546 57402984 ~ 57403575 (-)

Expression


Co-expression Network