LOC110520196


Basic Information

Item Value
gene id LOC110520196
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53600172 ~ 53629285 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597345.2
TCCGAGGTGAGGATTTACAGATTCACTCCTGTGTACACCTGTGGCACGGCTGGAGTCCGCCTCTATATAGATGGGCTTTTGAATGTCCGTGACACACGTTATTTCATTTTCTCTTTGGACGTCCGTATGGTTTGAAGTACAAACTTTCTGAAGTTCGCTTGACTGCAGGGAGGGAGATGCAACAAAGGACAACAGACAATGGACAGgtgtgctggagtcagagcagatccctaccagctgcaactCATCCATAAATGAAGATCTCTACATATACCCAttcctgccacttccactctgccagaaTTACCGCTCTGTTTCTggctcctgtctcctgttccacatctcaccacctTGCTCTGGATTTCACTCCCCACCATTACAttggattcccctcaggacctgtTTCCCTGTCCTGCTCAGGCAACTCCAACCTCATTCTACACTCCTGTTTTTTTTTGCACTCATCTGAGCTACCCCAGTTCTGCACTTCATATTTCTCTGTGTTCAATAAACACATTCATCCCGACTTCCTCTTCTGAGTCCGCTCTTGGGTTCCCCACCTTCGCTCCTCGTAACAGCATCATCTATGTTAATGTCTAAAGTGGAAGGACAGCTCTGTATCAGCTAATTTCAATATGTGCCAACCacactgttagttcctgtttcCACACACTGCTAGTCAGTTGATTTACTGTACAAGTCCTTTCCACTTCACTCTACTGCATGGAGATGCAACAATGGCATTGAGAACAGCAGGAAGTGTGTTGATGGTCTTTATCTGGTCTGAGACAGTGGTACTGGGTCAGAATGGCTGGAGGGTGACTTACAACCCTCAGAGTATCTGTGCCTTGAAGAGGTCAACAGTGGATCTGTCCTGCTCTTATACATATCCCAGAGGTCATACAGTCACAGGGACATCATGGTTCTATAGATGGTCTGTTGTGAAACCTCAGAATGATGATCGTGTGGAGTACTATGGGGACAAAGTGAATGACTGCACCCTGAGAAtcacagacctgagagagagtGACTCAGCTGAGTACTGTTTTACATTCAGGACTCAGATCATACAAGGTTATGTCTTTCAAAGTGTGAGAAGTGAGAGCTAttctggcagtcctggagtcaggCTGTCCGTCACAGGCCTGGAGGCAAAATTTCTAACTATAGTGACAGAGGGAGAGCCTGtgacactgacctgtagcaccacctgtactctgactgacaaccccaaccccacctacatctggaAGAAGAACAGACAACGTCTCACAAACCCAAAGACCAAAAGTAACTACCTGTACCTAGACCCAGTCAGCAGTGAGGATACAGGCAGATACTCCTGTGCTGTAAACGGCCATGAGAATCTCCCCTCTGCTGAAGAGACTCTCACTGTCAGATATGGCCCAAAGAGAGTGTCAGTATCAGTCAGTCCTTCTGGTAAAATAGTGGAGggcagttcagtgactctgacctgcagcagtgatgccaacccacctgTGGTCAAATACACCTGGTACAAGAAGAACGTAACCTCACCAAAAGCATCAGGACAGAGTTACAGCATCACTAACATCAGCTCTGAGGACAGTGGAGAATACTACTGTGAGGCTGAGAATACAATTGGAGCCCAGATATCTACACCTCAATTGATCATTGTAGCCGAGAAACAAGCTTCTGTGAAGAATGCATCTATAGGAATCATAGTGGTTGTTCTGGttctcatcctctgtctctctgtccttatgTGGTTCAGGAAGAAAGCCTCCAAATCCACCTCCGACacaagagacagaagagacacagTAGACAATGGACAGCAAGACTCTAGTCCCGTGTATGACAACATCTCAGGCATGGCCATAACCCATACTGCAGCACCGACAGCGGACAACCAGGATAACGTTCAATACGCCAGCATTCAACACAGAAACCAGGAAGTGCCTGAATACTCCACTGCCCAACCGTCTCAACCCCAGAAACAGGAGGAGGATGTCCAGTACGCTGCTGTGAAATTTAACCACACCAGTGCTGTTGACATTCCAGTAGAGACCACTGTGGTACAGTACACTGGAAACACCAGGTTTTAGTGTAGCTGGTGAGACATACAAAAGTAAAGAGAAATAAGCCAATTGTTATGGACGAATTGTAGGGATATTTTCCAACTATTCTTCTTGTATAATATGTTTGCTCCAAAAATGCATTTCTTGTAGAACTTCACTGACGTTTTGGTAGTTAGAAAGAGGCCTCATGAAGACAGGACGTCAGCTCTGCATCCCAATTTTAGTCCCTCAGTACTTCTAGTTGGTGTCAACCACAGAcatcacattattattatttcagtCAGTAGGTCCCCTTCCACACCTGGTGATATTAATTTGCTACATCACTACACCCTAgttacacctccacacctggtgacattAACCAGGGTGTAGTGCTGTAGTAAATGAATGTCACCAGGTGTTGAGAtggaggtgtaaccagggtgtagtgctgtagtaaattaatgtcaccaggtgtgaaggtggaggtgtaaccaggatgtagtaatgtagtaaa

Function

NR:

description
B-cell receptor CD22-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597345.2 True 2562 mRNA 0.46 11 53600172 53629285

Neighbor

gene id symbol gene type direction distance location
LOC110520194 LOC106586317 coding upstream 150290 53436028 ~ 53449882 (+)
LOC110520191 LOC106586320 coding upstream 224498 53347656 ~ 53375674 (+)
LOC110520190 LOC106586322 coding upstream 260780 53291284 ~ 53339392 (+)
kif5c LOC106586321 coding upstream 311192 53255416 ~ 53288980 (+)
LOC110520189 LOC106586324 coding upstream 346679 53235543 ~ 53253493 (+)
parp14rs3 LOC106586314 coding downstream 2484 53631769 ~ 53646425 (+)
LOC110520200 LOC106586309 coding downstream 236183 53865468 ~ 53869538 (+)
LOC110520202 LOC106586307 coding downstream 241465 53870750 ~ 53883922 (+)
LOC110520204 LOC106586306 coding downstream 275025 53904310 ~ 53990481 (+)
LOC110520205 LOC106586291 coding downstream 415692 54044977 ~ 54149088 (+)
G272989 NA non-coding upstream 2552 53597339 ~ 53597620 (+)
G272988 NA non-coding upstream 2894 53597024 ~ 53597278 (+)
G272984 NA non-coding upstream 10307 53589665 ~ 53589865 (+)
G272982 NA non-coding upstream 13241 53586652 ~ 53586931 (+)
G272867 NA non-coding upstream 121602 53423870 ~ 53478570 (+)
G273005 NA non-coding downstream 32705 53661990 ~ 53664217 (+)
G273016 NA non-coding downstream 73497 53702782 ~ 53705181 (+)
G273019 NA non-coding downstream 77137 53706422 ~ 53706886 (+)
G273021 NA non-coding downstream 79033 53708318 ~ 53708572 (+)
G273023 NA non-coding downstream 79987 53709272 ~ 53709501 (+)
LOC110520187 LOC106586325 other upstream 376907 53174264 ~ 53235027 (+)
acvr2aa LOC106586327 other upstream 427744 53124656 ~ 53172428 (+)
LOC110520169 il1rl1 other upstream 2021489 51573980 ~ 51582567 (+)
G269291 rap2a other upstream 2699895 50898589 ~ 50900277 (+)
G272965 NA other downstream 19540 53648825 ~ 53652431 (+)
G273004 LOC106586313 other downstream 28176 53657461 ~ 53658683 (+)
G273094 LOC106586310 other downstream 211979 53841264 ~ 53841617 (+)
G274592 NA other downstream 1245114 54874399 ~ 54875115 (+)
LOC110520231 dbr1 other downstream 1745261 55371759 ~ 55375526 (+)

Expression


Co-expression Network