ubxd2 (ubxd2)


Basic Information

Item Value
gene id ubxd2
gene name ubxd2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53661100 ~ 53663978 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001160552.1
AGGATTGAAACGATTAAACAGGAAAAGCCAACACATTTTATAAAAATGATTTGGTTTGAAGGCTCTATTCCAGCAGCCATCATCTCCGCAAAACAACAGAGCTCCATCTTCGTCGTCGTAATAACAGGCGACGATGAGGTGTCAGGACAAATGATGTCCAGTTGGGAGGACGACAGAGTGGCTGAGGCCTCCTATAACTGCTGTGTTGCAATCAAGGTTGATTCCAAGAGTGAGACATGCACACAGTTCTCCCAAATCTacatataccaggagctgtgccaggcctgccacgtctgttgattcatccagctgtaacgcatgtAATGCACTgtcttgtatgcgaagcagtaattgtttcaaaacctTTCCTGCCGTGTCACTGATGCgtcatgaaacagtgttgttggatgaaggcattgtctgtgtagttttttttctttctttttcccccagcattgtggCAGCAGGAAGagttaagtcctccacaatagtatggggcttgcctgtcctacccacttggtagctcaccatataagatgcttctatccccttcttattaatggtatctgttgcttttatacatatTACTTCTCGAAAGTCGTCTTTATTCTTGCTCCAAAAACTCCCGTTGATTATTTTTCAGATTGtcatgtttctaaatgtctgctcaAGAGTGATGGtttcccgtgagagagtaacggttaatgtgattgcattttaattatttgactaggctacctgtatttgacattgtgttatttcGTTGAACAATAGATGGTTTAATTAAACTGCCGAGATGAGACTACTCAGGCAAGGGGGAAAAAAcccacccaaatgtatagccccgttggaaaatataaatgtactgatGGAAATGTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001160552.1 True 880 mRNA 0.42 4 53661100 53663978

Neighbor

gene id symbol gene type direction distance location
LOC110520195 LOC106586316 coding downstream 98662 53537677 ~ 53562438 (-)
LOC110520193 LOC106586318 coding downstream 266782 53384541 ~ 53394318 (-)
zeb2a LOC106586328 coding downstream 785330 52827783 ~ 52875770 (-)
gtdc1 gtdc1 coding downstream 834711 52780781 ~ 52826389 (-)
LOC110520182 NA coding downstream 952354 52693956 ~ 52708816 (-)
LOC110520198 LOC106586311 coding upstream 7787 53671765 ~ 53746869 (-)
rab3gap1 LOC106586310 coding upstream 153133 53817111 ~ 53864985 (-)
LOC110520203 LOC106586308 coding upstream 219720 53883698 ~ 53893788 (-)
LOC110520207 LOC106586304 coding upstream 517694 54181672 ~ 54191829 (-)
LOC110520212 NA coding upstream 761580 54425558 ~ 54429214 (-)
G273493 LOC106586314 non-coding downstream 9149 53645933 ~ 53651951 (-)
G273464 NA non-coding downstream 58733 53602078 ~ 53602367 (-)
G273454 NA non-coding downstream 69420 53591439 ~ 53591680 (-)
G273298 NA non-coding downstream 263803 53397079 ~ 53397297 (-)
G272832 NA non-coding downstream 285579 53373540 ~ 53375521 (-)
G273523 NA non-coding upstream 102382 53766360 ~ 53766580 (-)
G273584 NA non-coding upstream 204731 53868709 ~ 53869460 (-)
G273686 NA non-coding upstream 354476 54018454 ~ 54025320 (-)
G273731 NA non-coding upstream 415801 54079779 ~ 54079990 (-)
G273735 NA non-coding upstream 420391 54084369 ~ 54084590 (-)
G272713 LOC106586324 other downstream 410016 53249926 ~ 53251084 (-)
il1rl1 il1rl1 other downstream 2060870 51596933 ~ 51619476 (-)
fgf9 NA other downstream 2186961 51471899 ~ 51478510 (-)
LOC110520160 LOC106586095 other downstream 2531790 51126600 ~ 51130404 (-)
G274344 LOC106586294 other upstream 1015940 54679918 ~ 54682805 (-)
LOC110520227 plekhm3 other upstream 1439516 55068639 ~ 55122013 (-)
G275250 NA other upstream 1746165 55410143 ~ 55411487 (-)
si:dkey-91i10.3 LOC106586420 other upstream 3606804 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 3739006 57402984 ~ 57403575 (-)

Expression


Co-expression Network