LOC110520198 (LOC106586311)


Basic Information

Item Value
gene id LOC110520198
gene name LOC106586311
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53671765 ~ 53746869 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974578.1
AGGCAACCTCCCCCTATCTGTCAGTCAGTTGCAGACGCGCTGCCTCCCCCTCATGTTGCCGACTGACTGGAAATAGaaacataaatatacacaccGATAACTAACAACCTAACGCAGCCGGTCACTGAGGGGCATGAGAGCCTTGTCGGAGGCCAGCGCTGTTGCTTGCCGGACCCAGTGCTGGTGACGGGGACATGGGCCTCTTCCTCAGGGCTTCCAGCACGACCCAGCTCCACACAAGTCAGAGCCTCAGCCACCAACTGGTCCAGCACCACCCAGACACCAACGGCAGCAGCACGCAGAGGGACCCCGCCTCAGTGGGTCTCGCCCTTCTCTTCGGCGCTGCCACTGACCTGCAGGCCAAGCACCGCAGccgGTCTCGAGCTCTTGGTAGACGAAGCTCCAAGTAGCCTTCTCTAATGAGGATGTCTGATACTGTCACTGTAAAGGAGACTAGCGCCACTATGAGAGGTGTGGAGACGGAGGAGAGCCACCATGCCAGTGCCACACCGACACCAGCGGGGGGAGAAGAACCAAGCCCGACCAAGACAAACGGCAGGGAGCAGGCAGAGACCCCGCCACAGGCCAAAGCTCAAACCCAGCTCCAACCCGAGATTCAACCAGAGAGCTGCTGCCAAGACAAGAACGAAACTCAGCGGCAAACACCGGGACAGATGGGAAAAAGGCCCAAGTTAAAGTTAGTTCGGAGCCTGGCTGTTTGCGAagagtcctctcctcctccccctattACCACTGATCTGCCTCGAGAACACAAGGATGAAGTTGAGATCCAGGTCTCCCAGTCATTTGACAAAGAGGAGGTGCCACCCATCAAGGATGAGGAGGACAAAGGTGTGGAGAAGCTGCTAGAGAAGACTGAGAGGATGCCCAGGAAGATGCTGTCCAGAGATTCCAGTCAGGAGTACACAGATTCTACCGGGATCGATATCCATGAATTCTTAGTAAACAcattgaaaaacaaccccagGGACAGAATGATGCTGCTGAAGTTGGAACAGGACATTCTCGACTTTATCAGTAATAACGAAAGCCAGAAGAGAAAGTTCCCTCCAATGACCTCCTACCACAGAATGCTGCTGCACCGCGTCGCCGCCTACTTCGGCCTAGACCACAACGTCGACCAAACCGGGAAATCTGTAATCATCAACAAAACTAGCAATACAAGAATccctGATCAAAAGTTTTCAGAACACATCAAAGACGACAAAACTGACGACTTCCAAAAGCGCTACATTCTCAAAAGGGACAACTCCGGCTCAGACAAAGATGACAACATGATGCGGATGCGGCTGAAGGACGACCGGAGGAGTAAGTCTATAGAGGAACGAGAGGAGGAGTACCAGAGGGCCAGAGACAGGATATTTGCTCAAGATGGTCCAGATGGCTTGGCTCTTGAAAAAAGGAAACAGGAGGATGATGCTTGTAACAGTACTCAGCAAAGGCGGCAAATGTTTAGGTTAAAAGATGGCCGCCCGGCCAACAGTCGCCAGAGCAGCTCTGAGAACGAACCCAAGTACTCTGACCCTCGGCCGTGGAGCAGCACAGACTCTGACAGCTCCAACCGTAACCTGAGGCCAGCCATGACCAAGGCCAGCAGCTTCAGCGGCATCTCTGTCCTCATCAGGGGAGACAGCTCGGGCAGCAGCAAGAGCATGGGTCGCCTCTCTAAGACTGgTTCACTAGAGTCTTCTAGTAGTGTAGGGTCCTCCACGGGttcgctctctcgctcccagcTGCCCCTCACCGTCCCAGCTCTAACCCAGGCTGGCCACCCTCACAACCACACCGTGCCCCCCTGCCCAGTGGCTTACCCAGCCACCTGCACTAGTAGTACTGTGACTTATGAGGCGGGAGGCAGGAGCGGCCCGGTGCCGCCACCACCAGCAAATACAGCTAACACTAGCTACTATTTGCTTCCCCTGGAAGCCACAGGGATACCGCCAGGGAGTATCCTGGTCAACCCACACACAGGCCAGCCCTTTGTGAACCCGGATGGCAGTGCTGTGGTATACAACCCCAACCACAGCATGGCTCCTCAGCATCAACATCATCAGCATCATAATCAGCAGGGCAGGACCCAGCAGCCCATGCtccctcctccacatcctcctggCCGCCACCAACACCAGTCCACCAATCACAACCACGTACTCTCACAGtCTGTTCTATCCCTTCCTCAGCCGGTCCGGCCCCTCCAGCCTTCTGCTCAGCCTGTCCAGTACTCATCTGTCTCTTACCCACCTCAGCTGCTCTCCGTCTCCCCTAACCAACAATACACTGTGCAAAATAACCTGGGAGCCCAGTTCAGCCACATGAGCTTGGCCCGGCAGGTCTCTGGAGAGGGCCCAGGTCGGGACACCCACATTGCCATGTACCCCTCCTCCGTCGTGCTCCAGACCCCCCCTCAGCAGCAGGGCTACATGGTGGCCCCTCCAGTCCAGCCCGTCCCGGCACCCCAGGCCTACAACACCCCCGCCCCTCCGCCTGTCAACCAGCCGGTCTTGCAGCAACAGGGCTACATGCAGCAGCAGATGCCAGCATGTTACTGTGCGCCAGGCCAGTACCCCCTGTCCAACCAGCAGTACAGGCCTGTGGGCACAGTGCAGTTCAGCGCCCCACAGAGTCAGCCAATGCCCCCGCCCACACAACAGACAGGTTACCAAACTGTGATGCCAAATCAGCCACAGAGCTATCAGAGTATGATTGGAGTGCCACAGAGTCAGAACACTGTCAGTGGCCTGCATAGCAATATGGGAAATCAGATGCAAGGCATGATGGTCCAGTATCCCTCCATGCCATCTTATCAGGTATCCATGCAGCCCCAAGGCTCACAGGGTGTGCCACAGCAGACATATCAGCAGCCTATCATCATCCCCAACCACAACCAGTCCAACCAGGGGCCCATGCCTGGCTCTGGTGTCCAGGTCTACTACAGTGTTATCACACCCAATCAACAGAACACTATGAGctctTCTGTTGGGTTCTTGCCTCCTGGAACAGAGCAGATGCAGTTCCCTCGGCCGTCCTCTCCCTGCAGCTCCCAGCAGCCCCTCCATCAGGCACAGCAGTGCTCAGGCGTTCCCCCTCCCCCAGGCGGTGGGATGGTGATGATGCAGCTGACGTTGCCCCCCGGCCAGCAACCACGGCCTCACTCGCCCCCGCAGTGGAAACACAGCAAGTACTACAGTCTGGACCACACGAGAGGACAGAAGTCCACAGAGCTCTCCACCCTAGACACCTCACAGAGCATTCCCCAGCTGGGCAGTCCCTCAACTTCCCCCGCCCAGTCGCCAACTCCCTCCCACCCACACCACCTAACCAATGTGAAGAGCATCCGTCCAGGCCTCGCCCCCGTACCCATGATGCCCCAGTTCTCCAGACCCTTTATGCCAGGGCAAGGAGATGTGCGGTACCCGTTACTAGGGCAGCCCCTCCAGTACAACCCCCAGATCCGTCCTCCTCTCCACGCTCCACCCATGGTCCCCAACCATCAGGTACCCATGGGGATGCGGCACAGCGGtggagggggcagagggaggaaGCAGACAAGGAAAGCTCTGTCTACAGATCTCAGTGTAGGTGATCCAGtgagtgggcaAGTCCTGGAGGTGACTGACCTGCCGGGAGAGATCAGCAGGACCGAGGCGGACTCTCTGCTAGGTGAGCTCTCCAGAGCCCGGGCTGTAGTCGGATGGCTCAGAGCACCACAGCCTCCGAGATTGGCAGTCGGGGGGCTAACGGTGTCCCCCACCCAAACCCACGGTCAAGCCCCTGCTGACCCAGCCTTCGTCTACACCATCCTGGCCATGTTCCCTTCCGGATACACTGCGCAGGACGCCCTCCTCCACCACAATGGCCCCCAAGCCTCCTTCAGACTCACAGTGAGCAGGGGCCACAGACACCCCCTGGAGAGGGCCAGCTCCCAGTAGAGGGCGCTAAGGACCCCTGGCTTGACCTTTCACCCCTCACCAGCACCGCCAGTCACTTCCTGTTGCCATCACTCCCCCCAGCCCCACTCCTCACTAAGTTGGCTTGTTGTTAAGGGTTGTTTTTCCACTAGAGACTTGCTTAGGGGGATTGTGTTGTACTTTGTAATGTTCTTACTAACGATTTGATGAAAAGGAACAAAAGAGCGAAACGTAACACTGATCTGACGTGAACAAACATTTAAAAACCACGATTATTGGAGTTCCAAATATTATAAACCCGTCTGCTCTCTGTTTTGAGAACCGGCCGGAACATATCAAAAGGGCagtctgtatttttgttttattttttaatttgttttataGTTGAAATCTTGAGTCAGACCCAAAGCTCATTATTATTCCCCAGCCCAGTTGCAGTGTCTGTCCTGGTTCCGTTTAACTCAACCAAAGCCTCCCCACACCCCAGGGTAGCTGATTATCGGCCACCCTGCCACCAGCCACTTGCCCCATATTGTGGCCAGTACATCATGGAGTCGCCCTTAGCTACACAATGGGTCTCTTGTGCCTTTCTCTTGAGAGTCTACTGATTTATTCTCCAAGAAACACAAAATGACACCCCAGTCAGTCTATTGTTAAATGAAAAGACCTGCCTGCACCTTGTAAATAATTTATATAGGATTGGTAATTAAATATCTCAATCACTTGTCATTTCA

Function

NR:

description
LOW QUALITY PROTEIN: R3H domain-containing protein 1-like

GO: NA

KEGG:

id description
K02360 ENC; a component of the cytoplasm (encore)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974578.1 True 4663 mRNA 0.55 27 53671765 53746869

Neighbor

gene id symbol gene type direction distance location
ubxd2 ubxd2 coding downstream 7787 53661100 ~ 53663978 (-)
LOC110520195 LOC106586316 coding downstream 109327 53537677 ~ 53562438 (-)
LOC110520193 LOC106586318 coding downstream 277447 53384541 ~ 53394318 (-)
zeb2a LOC106586328 coding downstream 795995 52827783 ~ 52875770 (-)
gtdc1 gtdc1 coding downstream 845376 52780781 ~ 52826389 (-)
rab3gap1 LOC106586310 coding upstream 70242 53817111 ~ 53864985 (-)
LOC110520203 LOC106586308 coding upstream 136829 53883698 ~ 53893788 (-)
LOC110520207 LOC106586304 coding upstream 434803 54181672 ~ 54191829 (-)
LOC110520212 NA coding upstream 678689 54425558 ~ 54429214 (-)
LOC110520213 ube2f coding upstream 757195 54504064 ~ 54594080 (-)
G273493 LOC106586314 non-coding downstream 19814 53645933 ~ 53651951 (-)
G273464 NA non-coding downstream 69398 53602078 ~ 53602367 (-)
G273454 NA non-coding downstream 80085 53591439 ~ 53591680 (-)
G273298 NA non-coding downstream 274468 53397079 ~ 53397297 (-)
G272832 NA non-coding downstream 296244 53373540 ~ 53375521 (-)
G273523 NA non-coding upstream 19491 53766360 ~ 53766580 (-)
G273584 NA non-coding upstream 121840 53868709 ~ 53869460 (-)
G273686 NA non-coding upstream 271585 54018454 ~ 54025320 (-)
G273731 NA non-coding upstream 332910 54079779 ~ 54079990 (-)
G273735 NA non-coding upstream 337500 54084369 ~ 54084590 (-)
G272713 LOC106586324 other downstream 420681 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 962949 52693956 ~ 52708816 (-)
il1rl1 il1rl1 other downstream 2071535 51596933 ~ 51619476 (-)
fgf9 NA other downstream 2197626 51471899 ~ 51478510 (-)
LOC110520160 LOC106586095 other downstream 2542455 51126600 ~ 51130404 (-)
G274344 LOC106586294 other upstream 933049 54679918 ~ 54682805 (-)
LOC110520227 plekhm3 other upstream 1356625 55068639 ~ 55122013 (-)
G275250 NA other upstream 1663274 55410143 ~ 55411487 (-)
si:dkey-91i10.3 LOC106586420 other upstream 3523913 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 3656115 57402984 ~ 57403575 (-)

Expression


Co-expression Network