rab3gap1 (LOC106586310)


Basic Information

Item Value
gene id rab3gap1
gene name LOC106586310
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53817111 ~ 53864985 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597349.2
AATTGCGGAAGAGACTCCATCGACAAGAATCCCATAATGCAACGGACAGCAAAATTCATAAACAGGAATTCATGATGGCGGCTGACAGTGACCCGGAGTCGGAGGTCTTCGAGATCACGGATTTTACCACCGCGtcggagtgggagagGTTTGTGTCCAGAGTAGAAGAGGTTCTGAATGACTGGAAGTTGATTGGGAACAATTCAAACAAACCACCAGAGAAGGGTGAATACACCAGTGGTACCTGGGAGGAGAAGACCCAGGATATCAATTTTGCTGATTTTAAATTCTCCGTAACGCACCACTGCCTGAAGCAGGAGTCTGAGGAGGGCGAGGGGAAGGAGGAACCTGAGGAGGaTGCCTTCCCCACAGCCATGCAGGACCTGCTCTGTATGAACAATGACTTCCCTCCCAGGGCCCACTGCCTCGTCAGATGGTATGGCATGCGTGAGTTTGTGGTCATCTCCCCCGGGGCCAACTGTGAGGCGGTCATCAGTGAGTCCAAGTGCAACCTGCTACTtagctccatctccatctctctggccAACACAGGCTGCCAGGTACCCATGTTTGTGCAGATCCAGCAGAAGTGGAGGAGGATGTACCATGGGGAGTGCCAGGGCCTGGGGGTGCGTACCGACTTTGAGATGGTCCACCTTCGCAAAGTACCCAGCCAATACAACCATCTCTCAGGCCTACTGGACATCTTCAAGTCCAAAATAGGTTGTCCCCTgactcctcttcctcccatcAACATCGCTATCCGCTTCACGTATGTCCTGCAAGACTGGCAGCAGTACTCCTGGCCTCAGCAGCCCCCTGACTTCGACGCTCTCCTCGGAggtgaggtgggaggggtggagtTCGGGAAGCTACCATTTGGAGCGTGTGAGGATCCAATCAGTGAGCTTCACCTAGCGACCACCTGGCCCCACCTGACAGAAGGCATCGTGGTGGATAATGATGTGTACTCTGATCTGGACCCGCTCCAGGCCCCTCATTGGTCAGTCCGAGTCAGGAAAGCAGACAGCCCCACCTGTTTGCTCGGTGACTTCCTGACGGAGTTCTTCAAGCTGTGCTCTAAGAAAGAGTCAACAGAGGAGATCCTGGGACGGGGTCCAGTTGAGGAGGAAGGCAAAGATGACATCAGCCATGCCCTGTCTAAGTTGACAGAGCCCACGGCCGTGCCCATCCCCAAGTTGTCTGTCTCTAACATGGTGCACAGCGCCCGCAAACGCATCCGCCGCCACCGCCGCGTCGACGAATCACCGCTCAGCAACGATGTGCTCAACTCCATACTGCTGtatctCTTCCCAGACGCTGCCATAGACAAGTCATCATCAGAGAACAGCGAGAGCAAGGCTTCTCAATTGAATACTGATGGGAAACCAGAAGAGAAGGAGTCTGACGACTATAACCTGTACAACCAGCTGAAGTCTGCTCCTAGTGACAGTCTGACATACCgcctggctctgtgtgtgtgtctggttaaCTTCTACCATGGAGGGGTCAGGGCGGTGGCTCACCTCTGGCAGGAGTTTGTCCTGGAGATGAGATACCGCTGGGAGAACAACTACCTCGTCTACGGACTGGCCAGTGGTCCTCCAGACCTTCGCTGCTGTCTCCTGCACCAGAAACTCCAGATGCTCAACTGCTGCATTGAGAGGAAGAGGGCGAGGGATGATGGAAGGAAGACGgctgagggagggaaggagaaggagagggagagagggagggagaggaaggtttCAGGGACGACCGGGACTGAGAATGGGCGCCTGGGGCCGGAGAGTGCAGAGATGGGCAGAGAGGTGTCTCCTGGGAAGTCGTGGGACTCGTGGAGTGACAGCGAGGACGAGTTCTTTGAGTGCCTGAGCGACACGGAGGAGATGAAGGAGGCTGGGTCCACAGACGGAGAGAAGGGCGGGGCCAAAGTGGCCAAGCCAGACGGTCGGCTCCACCCCCACGGGAAGTTGACCCTGCTCAACTCCCAGGAACCCCTGTACATCCCTGTTACTCAGGAGCCAGCGCCCATGACAGAAGACCTTCTAGAGGAGCAGTCGGAGGTATTGGCCAAACTGGGCACGTCAGCCGAGGGTGCCCACCTCCGCGCCCGCATGCAGAGTGCCTGTCTGCTCTCAGACATGGAGTCTTTTAAGGCAGCGAACCCTGGCTGTACCCTGGAGGACTTTGTGAGGTGGTACTCACCCAGGGACTACgttgaggaggaggtggtggacgAGAACGGAGACACAGTGGTCAGGGGTGACTTGAGTGCCAGGATGAAGATCCCGGGAAACATGTGGATGGAGGCGTGGGCCACAGCCAAGACTACCCCCGCTCGCAGACAGAGACGCCTGTTTGACGACACCAAGGAGGCTGAGAAGGTGCTGCACTACTTGGCGGTACAGAAGCCAGCAGACCTGACCCGCCATCTCCTGCCCTGCATCCTCCATGCTGCCATCctcaaggagaaggaggaggAGTCAGTAGAGGACATCCTATCTGTTAGAAAGGCCATCCAGCAGGCCACCTCTCATGCCAGCAAGCTGCTGCGCCACCCCAGCCCAGACTACAAGAAACTAGAGGACGTGATTACCCAGCTGATAGCGGTGGAGACGGTCATTGCCCGCTCACGCTCTCTGAAGGCCAAGTTTGGCATCGGGAAGGCAGAGCAGGGCGACAACGCAGAGGATCTGGAGAGGTTCGTGAGCTCTCTGCTGGAGGAGCCTGAGGTGTCTGTGATCGGAGCAGGGCGCGGCCCAGCCGGCAGCATCATCCATAAGCTGTTTGTCAGCGCTCAGAGGGCTGCCCTTTTGGCTCCATTGGATGAAGACACAGGACGTGGGGGTGGAGCTGATGACAAAAAGCCAATGGGTGGTGCCAGTGTGCCAGACTTCCCTCCCCCTGCAGGGCGTGAGATCCTGCTGCGTACGTGTGTCCCGCGGCCCGCGCCCTACTCCAAGGCTCTCCCCCAGCGTCTCTTCTGTGTCCTGATGAGAGAAGACTTCAGGCTGGCTGGGGCCTTCTCATCCGACACCTCCTTcttctgagagagggagagtgagagcgagagagaaggaaatggagagcaagagaggggcTAGTCTGGAAGATGAACCAGGGAGTGTTGGTAGGAGGGCATTTGGGATCTCTGGTCAGTGACTCAATCAAGGCTGTATGCATCTCATCATGAGTGGAGTTATGGGCGAGTCTATGGTTTGTTCCAAAGCCACATGACGGAAAGCTCCACCCATCTCGGGGCTGGCACCATCTTAAGTGTCTCGTGGGAGGATCGGAGAAACAGAACGGTGGGCTGGCAGGCAGCGCTTTCTTATGAAATCATCGCACTGTGCAACGACTCATATCAGACTGTTCGTTGGTTCCCGGAGGGCTACTATTTAGACTATTCAGTTATTTGGGGTTTAAATGCAAAATAGACTGAATTCAATTGGGAACTGAGCTTACTATGACTGTTTTAGTCAAATAAATCTCATGCTTTTTTTGTTGCGTAGCTCTGACAAAAAATAACCTAGGGAAAAATAAAAGTACCCTTGTGTGAAAATAAtttgtttttgggggggggaaatAAGAATATTCCCCTTGACCTATCTCCCTGAGTGGTAATATATTAGGACGCTAAATACCATATCATGTATTTTTCCCTGCCACTTGATTGTGATCGTTTGTGGCTCTCCAGTTGCCCAATCAGTCATTGGTTGAAGACCATCATCTCTTAGACGCTCACAATGCTCTATCTGTTCTGTAGCCCCAGACACTCTCACGCTGCCCATCGCGCTCGTACTGTATGCAGTAATTAGTTACCACTTAAAGCATTTCTCACTATAATAATGCTTATTGATATACATGCAATCACTGTAGGTTTTCCCTAGtcacctaaatgtattgaatcCTAGTTGAAAGTGCAATTACATATTCTATATTGTAAAGACGTAGCCTTACATATAGCAGCGGAAAGAAAGGTGTCCTAGTTAATGTCGTTAGTGCTGTTTCTATGAAGAAGGATGTTAAGTGCTGTTAATTGTTAAGTTGCTGAGTAATTTTACTTAAGTCAATGCAGACAACTTTTCTACTTTGTCAGTAATTGACTGAGGGGATGGATTCAAACTGTGGAGCTAGCCAAAGTCTGTACATGTCAAGTGAGTCTTGGTTGTAAATGTCTCCTAGTTTAGTCCTGTtacattggtaaaaaaaaaaataaacattttaattcAACACTAAAA

Function

NR:

description
rab3 GTPase-activating protein catalytic subunit-like

GO: NA

KEGG:

id description
K18270 RAB3GAP1; Rab3 GTPase-activating protein catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597349.2 True 4244 mRNA 0.53 24 53817111 53864985

Neighbor

gene id symbol gene type direction distance location
LOC110520198 LOC106586311 coding downstream 70242 53671765 ~ 53746869 (-)
ubxd2 ubxd2 coding downstream 153133 53661100 ~ 53663978 (-)
LOC110520195 LOC106586316 coding downstream 254673 53537677 ~ 53562438 (-)
LOC110520193 LOC106586318 coding downstream 422793 53384541 ~ 53394318 (-)
zeb2a LOC106586328 coding downstream 941341 52827783 ~ 52875770 (-)
LOC110520203 LOC106586308 coding upstream 18713 53883698 ~ 53893788 (-)
LOC110520207 LOC106586304 coding upstream 316687 54181672 ~ 54191829 (-)
LOC110520212 NA coding upstream 560573 54425558 ~ 54429214 (-)
LOC110520213 ube2f coding upstream 639079 54504064 ~ 54594080 (-)
LOC110520216 LOC106586300 coding upstream 752543 54617528 ~ 54624544 (-)
G273523 NA non-coding downstream 50531 53766360 ~ 53766580 (-)
G273493 LOC106586314 non-coding downstream 165160 53645933 ~ 53651951 (-)
G273464 NA non-coding downstream 214744 53602078 ~ 53602367 (-)
G273454 NA non-coding downstream 225431 53591439 ~ 53591680 (-)
G273298 NA non-coding downstream 419814 53397079 ~ 53397297 (-)
G273584 NA non-coding upstream 3724 53868709 ~ 53869460 (-)
G273686 NA non-coding upstream 153469 54018454 ~ 54025320 (-)
G273731 NA non-coding upstream 214794 54079779 ~ 54079990 (-)
G273735 NA non-coding upstream 219384 54084369 ~ 54084590 (-)
G273743 NA non-coding upstream 229887 54094872 ~ 54095187 (-)
G272713 LOC106586324 other downstream 566027 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 1108295 52693956 ~ 52708816 (-)
il1rl1 il1rl1 other downstream 2216881 51596933 ~ 51619476 (-)
fgf9 NA other downstream 2342972 51471899 ~ 51478510 (-)
LOC110520160 LOC106586095 other downstream 2687801 51126600 ~ 51130404 (-)
G274344 LOC106586294 other upstream 814933 54679918 ~ 54682805 (-)
LOC110520227 plekhm3 other upstream 1238509 55068639 ~ 55122013 (-)
G275250 NA other upstream 1545158 55410143 ~ 55411487 (-)
si:dkey-91i10.3 LOC106586420 other upstream 3405797 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 3537999 57402984 ~ 57403575 (-)

Expression


Co-expression Network