LOC110520200 (LOC106586309)


Basic Information

Item Value
gene id LOC110520200
gene name LOC106586309
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53865468 ~ 53869538 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597350.2
AGACATGAAATGCCTTCATGGACACATGTTGCCAGCAGAGGGCAGCAAATAGTGACACATGTGACATTACACAAGGTATTTACCGAACACACAATGCCAGTTCCGTAAGTGCCCGTGACTCGTCAGTTCTTCCAATTTATTCGAACCGAGGAGGTTCCACTGTAATTCAGAGGAGGATTACATCTTTTCAATCATGAAGTCAGTTGTCAGCATTTCTTCCTCAGTTAGGGCTGTGTGTCAGTACTCTCCCAACTATTTCATGACTTGTAGTCGGGGATTAATACGTCACTCAAATTCATCTGGAAGAATATTGAAATCGGACGTTTCTTTTAAAGCCAGAATGGCACAACCATGTGTAAAAAGTACTTTAGGCTGCTTCCATAACACACGTGAGATGGGGGCGGTGGCGCAACAGTTAAATAACCTCCCATTTGCAGAAGAGAAAGACTACGAATTAAGGGTTCACCCGGAGAAACACCTTTTGCCCAAAACAGCTGGGCAGCCTTCCATTGACACCCAATTAGGAACCAGTGCTTCACCAACAAAACTAGGGCACATAAAAGTGGAGCCACTTTCTGTCAAATCCCTTTTCGAGGTTGAGGTTTTACCTGAGTTGTTAACACGTTTGAAAGAAGCTCCCAGCAATGAGAAAACTGAGGGTCTGGCAACCTTACTGGGAGTATGTGTTGAGTTTGGTGTGGACTATCAAAGTTCAATTGTCTCTAGATTgaaagaggagtggaggacaCACCTCTCCAAAACAGACATTGGGGTCATTCACCTGTGCCATCTCGGAGAAGTAGCCTATAATCTGGAGGGGAAGAGGTCAGAGATTGTTGAGCAGGTTCTCGACTCCGTGAGCATCAGCATTGATGCTCTCACCCAAAATGAAACCGCTCGTGTGTACTCCTTCCTTGCACTACTCGAGGACCCACACCATTGCCAAGATCTCATGTCAagactacacagacacacagagaaattGATACACAGACTACAAGCCATCAACATCAGTGACATCTTCCACTCCCTGGTGGCATTACAACAGAGGCAGGCCATTGCACTGATTGTGAAGCTGAGCAGACGGGCCTCTAGGGTATTCAGATCGTTCCAAGATGAAGAGCTCATCAAAGTTCTAGGTGCCTTAATGCATTTCGGTCAGCATGATGAAGACTTCATAACAGCCATGGAAAAGCACCTGCCAGTGAAAATAGTAGACGCAGACCCCGAACTCACAAGCGTGGTGATGGAGTTTTGCCTTCAGATGAAGTGTCGCTCAGAGCCCATATTCGAAGCTGTGGCTGAGAGCTTTATTTGCAACTCAGAGAAGTATACCACACCCCAGATAGCCCGGCAGATCATTGCCATGGGGAGACTGAGCTACCTGCCCCAGTGCTCCAGTCAGATGTTTAAGAAGCTGGAGAGTGTGCTGTCCTCTCGCTTCTCCCAGTTCCAGCCCAGGGCTCTGATAGAGGTGCTCCACTCCTGTATTCACCTGGAGAGGTTTCCACTCAACTTTGTGTCCAAAGTCTTCAGCCCCTACTTCCTACAGAGGTTGCAAGCACAAGGGGAGCCCCTGGACAAGCATGCCTTAGGCCAGCTAACCCAACTCAACCTCTCTATCTCACTAGAGTGCAACTACTACCGGGGCGCGAGATTACCTTACCATCTCCATGTGAAGAAGTTTTCCTCCATGGACCACTCCTTTGAGAGCCCTGTAGAGAGCTACCTGTACAACCAGGTGAAGGGTCCTCTTAACAAGCTGCTAGAGGGAAAGACCTACTACTCTACCAGGGTCTTCACGCAGCCTGGATACACCATAGACGTGGAGATCTGTCTGGATGAGGATGGGTTTGTCCTGCCTCTCTCACAGTGGGACCACACTCATAGGAGGATTGCCTTGTGCCTGGATGCTCAGGACCGCTTCTGCAGCAACACCCATCACCTTCTGGGAAAGGAGGCCACAAAGAGACGCCACCTCTGCAGAATGGGCTACGAAGTGGTTCAGATCCCTTACTTTGAATTTGAGAAATTGAGAACACAACAGGAACGGGTACAATACCTTCATAAGAAGATATTCCCCACAATCTTCACGTTTTACCGGTGACTTCTcagataggataggataggaggatGTTGTGACATCACATCCAAGCtctgtgacctctgacctgacAACATGGCCTTCAACAAGATGAACTAGGATGTTTCTTAAACTGTCTACTAATCATCACAGAAAACATTGGATTGGATTAGGCATGAACCTTTCGTTTCTAAAGTCTTCATTATACTATTATGACAGTGTTGGGGTTATGACAGAGTGGTCTAGAAAAGTGTTAAGTCATTGGATTAGGCATGAACCTTCCGTTTCTAAAGTCTTCATtatactattatgactgtgttgggGTTATGACAGAGTGGTCTAGAAAAGTGTTAAGTCATTGTACATAATGTGATGGAATTTTTCACAAAATATGGACTATGGCTATGGTAGGTAATAGGTCAACTATAAACTGCATACTTCCATATAGGAGCTTTCTGCAGTTTGTTAGTTATACACTGACTCTATATTCATAAATAAAACAGGTTTGTGTTTCCATGTAAGcttgaaggtactgtatattttgtaCAATGGACTGTATTTTCCAATACAGATGATTCTATATTGcaaaataaaatgtgtaaaaCCAGTTTTCAAACAACCATGGGGGAAACTCAAAGTTCCTTTGCTGTTATGTGTTTTTGTAAACAATAAACATGATTTGTATAAAGCC
>XM_021597351.2
TCCGTAAGTGCCCGTGACTCGTCAGTTCTTCCAATTTATTCGAACCGAGGAGGTAAGCAATCTACacacttaaagaaaaaaatattaacgGTGCTCAAAAGCTAATGATGATGTAAGGTTCCACTGTAATTCAGAGGAGGATTACATCTTTTCAATCATGAAGTCAGTTGTCAGCATTTCTTCCTCAGTTAGGGCTGTGTGTCAGTACTCTCCCAACTATTTCATGACTTGTAGTCGGGGATTAATACGTCACTCAAATTCATCTGGAAGAATATTGAAATCGGACGTTTCTTTTAAAGCCAGAATGGCACAACCATGTGTAAAAAGTACTTTAGGCTGCTTCCATAACACACGTGAGATGGGGGCGGTGGCGCAACAGTTAAATAACCTCCCATTTGCAGAAGAGAAAGACTACGAATTAAGGGTTCACCCGGAGAAACACCTTTTGCCCAAAACAGCTGGGCAGCCTTCCATTGACACCCAATTAGGAACCAGTGCTTCACCAACAAAACTAGGGCACATAAAAGTGGAGCCACTTTCTGTCAAATCCCTTTTCGAGGTTGAGGTTTTACCTGAGTTGTTAACACGTTTGAAAGAAGCTCCCAGCAATGAGAAAACTGAGGGTCTGGCAACCTTACTGGGAGTATGTGTTGAGTTTGGTGTGGACTATCAAAGTTCAATTGTCTCTAGATTgaaagaggagtggaggacaCACCTCTCCAAAACAGACATTGGGGTCATTCACCTGTGCCATCTCGGAGAAGTAGCCTATAATCTGGAGGGGAAGAGGTCAGAGATTGTTGAGCAGGTTCTCGACTCCGTGAGCATCAGCATTGATGCTCTCACCCAAAATGAAACCGCTCGTGTGTACTCCTTCCTTGCACTACTCGAGGACCCACACCATTGCCAAGATCTCATGTCAagactacacagacacacagagaaattGATACACAGACTACAAGCCATCAACATCAGTGACATCTTCCACTCCCTGGTGGCATTACAACAGAGGCAGGCCATTGCACTGATTGTGAAGCTGAGCAGACGGGCCTCTAGGGTATTCAGATCGTTCCAAGATGAAGAGCTCATCAAAGTTCTAGGTGCCTTAATGCATTTCGGTCAGCATGATGAAGACTTCATAACAGCCATGGAAAAGCACCTGCCAGTGAAAATAGTAGACGCAGACCCCGAACTCACAAGCGTGGTGATGGAGTTTTGCCTTCAGATGAAGTGTCGCTCAGAGCCCATATTCGAAGCTGTGGCTGAGAGCTTTATTTGCAACTCAGAGAAGTATACCACACCCCAGATAGCCCGGCAGATCATTGCCATGGGGAGACTGAGCTACCTGCCCCAGTGCTCCAGTCAGATGTTTAAGAAGCTGGAGAGTGTGCTGTCCTCTCGCTTCTCCCAGTTCCAGCCCAGGGCTCTGATAGAGGTGCTCCACTCCTGTATTCACCTGGAGAGGTTTCCACTCAACTTTGTGTCCAAAGTCTTCAGCCCCTACTTCCTACAGAGGTTGCAAGCACAAGGGGAGCCCCTGGACAAGCATGCCTTAGGCCAGCTAACCCAACTCAACCTCTCTATCTCACTAGAGTGCAACTACTACCGGGGCGCGAGATTACCTTACCATCTCCATGTGAAGAAGTTTTCCTCCATGGACCACTCCTTTGAGAGCCCTGTAGAGAGCTACCTGTACAACCAGGTGAAGGGTCCTCTTAACAAGCTGCTAGAGGGAAAGACCTACTACTCTACCAGGGTCTTCACGCAGCCTGGATACACCATAGACGTGGAGATCTGTCTGGATGAGGATGGGTTTGTCCTGCCTCTCTCACAGTGGGACCACACTCATAGGAGGATTGCCTTGTGCCTGGATGCTCAGGACCGCTTCTGCAGCAACACCCATCACCTTCTGGGAAAGGAGGCCACAAAGAGACGCCACCTCTGCAGAATGGGCTACGAAGTGGTTCAGATCCCTTACTTTGAATTTGAGAAATTGAGAACACAACAGGAACGGGTACAATACCTTCATAAGAAGATATTCCCCACAATCTTCACGTTTTACCGGTGACTTCTcagataggataggataggaggatGTTGTGACATCACATCCAAGCtctgtgacctctgacctgacAACATGGCCTTCAACAAGATGAACTAGGATGTTTCTTAAACTGTCTACTAATCATCACAGAAAACATTGGATTGGATTAGGCATGAACCTTTCGTTTCTAAAGTCTTCATTATACTATTATGACAGTGTTGGGGTTATGACAGAGTGGTCTAGAAAAGTGTTAAGTCATTGGATTAGGCATGAACCTTCCGTTTCTAAAGTCTTCATtatactattatgactgtgttgggGTTATGACAGAGTGGTCTAGAAAAGTGTTAAGTCATTGTACATAATGTGATGGAATTTTTCACAAAATATGGACTATGGCTATGGTAGGTAATAGGTCAACTATAAACTGCATACTTCCATATAGGAGCTTTCTGCAGTTTGTTAGTTATACACTGACTCTATATTCATAAATAAAACAGGTTTGTGTTTCCATGTAAGcttgaaggtactgtatattttgtaCAATGGACTGTATTTTCCAATACAGATGATTCTATATTGcaaaataaaatgtgtaaaaCCAGTTTTCAAACAACCATGGGGGAAACTCAAAGTTCCTTTGCTGTTATGTGTTTTTGTAAACAATAAACATGATTTGTATAAAGCC

Function

NR:

description
FAST kinase domain-containing protein 3, mitochondrial-like

GO:

id name namespace
GO:0016310 phosphorylation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597350.2 False 2774 mRNA 0.45 6 53865468 53869538
XM_021597351.2 True 2738 mRNA 0.45 6 53865569 53869538

Neighbor

gene id symbol gene type direction distance location
parp14rs3 LOC106586314 coding upstream 219043 53631769 ~ 53646425 (+)
LOC110520196 NA coding upstream 236183 53600172 ~ 53629285 (+)
LOC110520194 LOC106586317 coding upstream 415586 53436028 ~ 53449882 (+)
LOC110520191 LOC106586320 coding upstream 489794 53347656 ~ 53375674 (+)
LOC110520190 LOC106586322 coding upstream 526076 53291284 ~ 53339392 (+)
LOC110520202 LOC106586307 coding downstream 1212 53870750 ~ 53883922 (+)
LOC110520204 LOC106586306 coding downstream 34772 53904310 ~ 53990481 (+)
LOC110520205 LOC106586291 coding downstream 175439 54044977 ~ 54149088 (+)
LOC110520208 LOC106586301 coding downstream 339337 54208875 ~ 54317829 (+)
LOC110520209 e41l5 coding downstream 449145 54318683 ~ 54365397 (+)
G273119 NA non-coding upstream 45 53865155 ~ 53865423 (+)
G273113 LOC106586310 non-coding upstream 5496 53857406 ~ 53859972 (+)
G273093 LOC106586310 non-coding upstream 46931 53817120 ~ 53818537 (+)
G273056 NA non-coding upstream 108686 53756576 ~ 53756782 (+)
G273039 NA non-coding upstream 134207 53730078 ~ 53731261 (+)
G273173 NA non-coding downstream 92483 53962021 ~ 54025301 (+)
G273252 NA non-coding downstream 211245 54080783 ~ 54081079 (+)
G273253 NA non-coding downstream 211610 54081148 ~ 54081395 (+)
G273254 NA non-coding downstream 214001 54083539 ~ 54083773 (+)
G273257 NA non-coding downstream 217613 54087151 ~ 54087491 (+)
G273094 LOC106586310 other upstream 23851 53841264 ~ 53841617 (+)
G273004 LOC106586313 other upstream 206785 53657461 ~ 53658683 (+)
G272965 NA other upstream 213037 53648825 ~ 53652431 (+)
LOC110520187 LOC106586325 other upstream 642203 53174264 ~ 53235027 (+)
G274592 NA other downstream 1004861 54874399 ~ 54875115 (+)
LOC110520231 dbr1 other downstream 1505008 55371759 ~ 55375526 (+)
G275542 LOC106586374 other downstream 2030656 55900194 ~ 55900743 (+)
G275553 LOC107595854 other downstream 2045791 55915329 ~ 55916133 (+)
G277296 NA other downstream 3395029 57264567 ~ 57264892 (+)

Expression


Co-expression Network