LOC110520204 (LOC106586306)


Basic Information

Item Value
gene id LOC110520204
gene name LOC106586306
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53904310 ~ 53990481 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974583.1
TCTTATGTCTAGCAAATGCATGTGCTGATAATCAGATCTCTCTTACACAAGTGAAACAAAACCTTAATTTAGGAATCTGCTCACGTCAGTTGAGAGGGAGGGGTTTGGGGTCTGTTGCTGCTGATGCTGTGGTGTGGATATTGCGTTTATCTTTCTTCTAGTCATCGCCGCCTTCACTTCGTGCTTGTCAACACCGGCGGCATTCGCGCCCTAGATGGCTGCATTTGGCAGTCCTTTGTGAGATTATTTTCCCGAGGATTTTTGACCTATAAGTAAACCATGACTGACCCAACGACACAAGATTCCTTCCCCGTCCCGGATCCCACAATCGTGGATCCTTCAGCTGTAAGAAACGGCGGATGCGCTCCGGAGGCGAACCTATCCAAAAGACCGAGTCAGGGCGATCCTTTCAGTATGGACCGGGACCAAGAGATGAAAATCACGGACAGTGTTGAGGGACAAGGTAGCCTGCTGGAAAGCAGCATGCGACTAAAGCCCCATGAGGCTCAAAACTACAGGAAGAAGGCATTGTGGGTATCTTGGATCTCCATCGTGGTGACACTCATCCTGGCAGTGGCAGCCTTCActGTTTCGTTCATGAGACACAGCGCATCAGCATTTGGATTTGCTTTTGACGCCACGTTGGACGTGCTATCTTCAATTATCGTGCTGTGGCGCTATAGCAATGCCGCAGCTGTCCACTCCGCCCATAGGGAGTACATAGCGTGCGTGGTCCTTGGGGTGGTCTTCATCTTGTCCTCCCTGTGTATTCTAGGAAAAGCAATCCATGACCTGGCCACCAAGCTGCTTCCAGAAGTGgatgACTTCCTCTTCAGTGTGTCTATTGTCAGTGGGATTGTATGTATCATCCTGGCTGTGTTCAAGTTCCTGCTGGGGAGAGTGCTGACCAGTAGAGCCCTCATCACTGACGCTTTTAACTCCATGGTGGGGGGCATCATGGGTTTCTCCATCCTCATCAGTGCTGAGGTGTTCAGACACCACCCTGACGTCTGGTACCTGGACGGATCCATCGGCGTCATCATCGGACTCATCATCCTCGCTTACGGTGTCAAACTGCTCCTGGACATGGTACCCCGGGTGAGACAAACCAGGAACTACGAACGCTTTGAGTGAACGCTCCTAGGACCAGGTTTACACCTgatgcaccccttccccttcccctcccctcctctctttctatctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaggccctagCCTGGAGAGACTCTGAGGGCAAAATAGTTAAAGACATTATGATGTTGTTGGCGTGTTGGCCAACCTCTCAATCAAGGTTTTCCCACCTAGCCACCCCCTTCTAACTATTTGTCTTTACCTCCTGTCCATCATTATTACTATCCAGAAAGAGGGAATGAAGAGGTGAGAAAAAGGATTACGAAGAGGCTGGCATTAACGGCTGGTCCAGAGAGATCAGCATTTGTTTGCCATGTGTATCTGAACCCACTGCTGTTGCTAAGCGACCTAGAACCCCTGGCATTTTGAGAGGCACAAGATCCCTTTCATATTGCCCAAACCTTTTTTATGTTCCAACCCTGATTAGTATGGGGGGAGGGTTCACAGGAGAACACCTGTTGTAGACCATCCACATAAACTTCTGTGACTTTCAAAATCCCTATGCATTGTTAGAATCTGAATCATTTATAATGGTGGAATCATGCCACTACTTTCTGCCCTGGTCTGTTTTCACAGATCTCTATGGTTCTGTGTGTGAGTCTCCATTGCTCTTTGAGATTagaagctacagttgaagtctacatagtttacatacacttaggttggagtcattaaaactcgtttttcaaccactccacaaatttcttgttaacaaactataattttggcaaatcggtta
>XM_036974584.1
TCTTATGTCTAGCAAATGCATGTGCTGATAATCAGATCTCTCTTACACAAGTGAAACAAAACCTTAATTTAGGAATCTGCTCACGTCAGTTGAGAGGGAGGGGTTTGGGGTCTGTTGCTGCTGATGCTGTGGTGTGGATATTGCGTTTATCTTTCTTCTAGTCATCGCCGCCTTCACTTCGTGCTTGTCAACACCGGCGGCATTCGCGCCCTAGATGGCTGCATTTGGCAGTCCTTTGTGAGATTATTTTCCCGAGGATTTTTGACCTATAAGTAAACCATGACTGACCCAACGACACAAGATTCCTTCCCCGTCCCGGATCCCACAATCGTGGATCCTTCAGCTGTAAGAAACGGCGGATGCGCTCCGGAGGCGAACCTATCCAAAAGACCGAGTCAGGGCGATCCTTTCAGTATGGACCGGGACCAAGAGATGAAAATCACGGACAGTGTTGAGGGACAAGGCCTGCTGGAAAGCAGCATGCGACTAAAGCCCCATGAGGCTCAAAACTACAGGAAGAAGGCATTGTGGGTATCTTGGATCTCCATCGTGGTGACACTCATCCTGGCAGTGGCAGCCTTCActGTTTCGTTCATGAGACACAGCGCATCAGCATTTGGATTTGCTTTTGACGCCACGTTGGACGTGCTATCTTCAATTATCGTGCTGTGGCGCTATAGCAATGCCGCAGCTGTCCACTCCGCCCATAGGGAGTACATAGCGTGCGTGGTCCTTGGGGTGGTCTTCATCTTGTCCTCCCTGTGTATTCTAGGAAAAGCAATCCATGACCTGGCCACCAAGCTGCTTCCAGAAGTGgatgACTTCCTCTTCAGTGTGTCTATTGTCAGTGGGATTGTATGTATCATCCTGGCTGTGTTCAAGTTCCTGCTGGGGAGAGTGCTGACCAGTAGAGCCCTCATCACTGACGCTTTTAACTCCATGGTGGGGGGCATCATGGGTTTCTCCATCCTCATCAGTGCTGAGGTGTTCAGACACCACCCTGACGTCTGGTACCTGGACGGATCCATCGGCGTCATCATCGGACTCATCATCCTCGCTTACGGTGTCAAACTGCTCCTGGACATGGTACCCCGGGTGAGACAAACCAGGAACTACGAACGCTTTGAGTGAACGCTCCTAGGACCAGGTTTACACCTgatgcaccccttccccttcccctcccctcctctctttctatctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaggccctagCCTGGAGAGACTCTGAGGGCAAAATAGTTAAAGACATTATGATGTTGTTGGCGTGTTGGCCAACCTCTCAATCAAGGTTTTCCCACCTAGCCACCCCCTTCTAACTATTTGTCTTTACCTCCTGTCCATCATTATTACTATCCAGAAAGAGGGAATGAAGAGGTGAGAAAAAGGATTACGAAGAGGCTGGCATTAACGGCTGGTCCAGAGAGATCAGCATTTGTTTGCCATGTGTATCTGAACCCACTGCTGTTGCTAAGCGACCTAGAACCCCTGGCATTTTGAGAGGCACAAGATCCCTTTCATATTGCCCAAACCTTTTTTATGTTCCAACCCTGATTAGTATGGGGGGAGGGTTCACAGGAGAACACCTGTTGTAGACCATCCACATAAACTTCTGTGACTTTCAAAATCCCTATGCATTGTTAGAATCTGAATCATTTATAATGGTGGAATCATGCCACTACTTTCTGCCCTGGTCTGTTTTCACAGATCTCTATGGTTCTGTGTGTGAGTCTCCATTGCTCTTTGAGATTagaagctacagttgaagtctacatagtttacatacacttaggttggagtcattaaaactcgtttttcaaccactccacaaatttcttgttaacaaactataattttggcaaatcggtta

Function

NR:

description
PREDICTED: transmembrane protein 163-like isoform X2

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974583.1 False 1964 mRNA 0.48 8 53904310 53990481
XM_036974584.1 True 1961 mRNA 0.48 8 53904310 53990481

Neighbor

gene id symbol gene type direction distance location
LOC110520202 LOC106586307 coding upstream 20388 53870750 ~ 53883922 (+)
LOC110520200 LOC106586309 coding upstream 34772 53865468 ~ 53869538 (+)
parp14rs3 LOC106586314 coding upstream 257885 53631769 ~ 53646425 (+)
LOC110520196 NA coding upstream 275025 53600172 ~ 53629285 (+)
LOC110520194 LOC106586317 coding upstream 454428 53436028 ~ 53449882 (+)
LOC110520205 LOC106586291 coding downstream 54496 54044977 ~ 54149088 (+)
LOC110520208 LOC106586301 coding downstream 218394 54208875 ~ 54317829 (+)
LOC110520209 e41l5 coding downstream 328202 54318683 ~ 54365397 (+)
LOC110520210 LOC106586303 coding downstream 375448 54365929 ~ 54437361 (+)
LOC110520220 LOC106586295 coding downstream 678369 54668850 ~ 54672399 (+)
G273119 NA non-coding upstream 38887 53865155 ~ 53865423 (+)
G273113 LOC106586310 non-coding upstream 44338 53857406 ~ 53859972 (+)
G273093 LOC106586310 non-coding upstream 85773 53817120 ~ 53818537 (+)
G273056 NA non-coding upstream 147528 53756576 ~ 53756782 (+)
G273039 NA non-coding upstream 173049 53730078 ~ 53731261 (+)
G273252 NA non-coding downstream 90302 54080783 ~ 54081079 (+)
G273253 NA non-coding downstream 90667 54081148 ~ 54081395 (+)
G273254 NA non-coding downstream 93058 54083539 ~ 54083773 (+)
G273257 NA non-coding downstream 96670 54087151 ~ 54087491 (+)
G273261 NA non-coding downstream 102037 54092518 ~ 54094138 (+)
G273094 LOC106586310 other upstream 62693 53841264 ~ 53841617 (+)
G273004 LOC106586313 other upstream 245627 53657461 ~ 53658683 (+)
G272965 NA other upstream 251879 53648825 ~ 53652431 (+)
LOC110520190 LOC106586322 other upstream 567784 53291284 ~ 53339392 (+)
LOC110520187 LOC106586325 other upstream 681045 53174264 ~ 53235027 (+)
G274592 NA other downstream 883918 54874399 ~ 54875115 (+)
LOC110520231 dbr1 other downstream 1384065 55371759 ~ 55375526 (+)
G275542 LOC106586374 other downstream 1909713 55900194 ~ 55900743 (+)
G275553 LOC107595854 other downstream 1924848 55915329 ~ 55916133 (+)
G277296 NA other downstream 3274086 57264567 ~ 57264892 (+)

Expression


Co-expression Network