LOC110520210 (LOC106586303)


Basic Information

Item Value
gene id LOC110520210
gene name LOC106586303
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 54365929 ~ 54437361 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597373.2
ACTGTCAAGAGAATTTACGCTCGAGACCCACCAGTTCACTGGTGGAGCAGGCACTGTTCTGAATTAGTGCGTCTCGAACGCGCAATGGTTTGTTGGAGTTGCCAAGTACCTCGTAGTGAACACGAATCTTGCGCCAGGTTTTTGGACTGTCTTATGGACTTGGTCAAATTTGACTTGTCCAGTCGCGATGTTGGCTTAATGTATTTCAATGATAACGAATCTATTTCGTAAAGACAACTGACCGGATAGGCTACTCGGAAAGGGAACTCCCGACAACCCGAAGCATGTGTACCTCTCCAGAGTTATTTTTTTGCGCAAGGTGATAGTGACGGTGAAGACAGTTGAGCTGCCTTTTCTAGTTGGCTAAGAGGAACGAGTCAAATACTTATGGATTACTACCCTATGGTTCTTTGACAGGGTCGCCTCGATCTTAAAGTGGAACATTAGGGAGGACACTTGTGAGGCTTTATCTTCTGTTTCACACATCTTAACGCTTTTCCAACTTCTGGCATTGGACAACAGTTTTGAAGGAAGACCATGGCATCGGAAACCACTCCAGTGTTGTCGAAACAGGTGTTACTTTGGCTGGTTGTAGcATGCCAGTCTGTGTCGGTGATGGCTTGTGGCGGGACCTATGAGTATGCCATTGAGGAGTTCTGCCTGGGGAAATTCAGACTGGACATGGAGGAACTTGACCAGCATCACTGGTGCAGCTGGGAGGATACAGTGGAACCTTATGGTGAGCTCACCAACTGCACCTACCTGATTGCCCTGAAGATGGACTGTTTCTGGCCCAACCGGCAGGTGGACGAGTTCTTCATCCGCATCCACAAGCACTACTTCCACGACTGCTCCCTGTCGGGACGGCAGCTGCGTGATCCGCCCAACCATATCCTTGGACCATTCATTGTGGTGCCCATCCTTGTCACGCTGCTCATGACTGCCCTAGTGGTGTGGAGGAGCAAACGCAGCGAAGGCATTGTGTAACCCAGGCCAACCCCATGCTCCAGGCCCCCAGCCAGGGGAGAAGAGGTCTAGAGGAGGCCCCCTTCACCCTCCACCCAGGACGAAGACAGGTATACAtaacgctgctgctactacagaaCAGAcatcatggaccaggcaagggaCTGGGAGGACTATCAAAGCCTGTATCAAGGACAACATTATAGACCATCTATGTTACTGTCACTCTGTTGGGAGTTGACACTGAGCTACCGCCACAGGATATAGGAAAGGACACAGACTACAAGATGAGGATTTACAGAACTACACTGATTATAACCTGCAGGAGGACTTGTTTAAAAATGGAGTGTCTGCTTTCATTACCCTTTATCTGCAAATCCAATCTAGATGGAGAATCACAAGCTGTTAGCCATGAAGGACAGATGGTGTCTGATTGGTTTGAAGGACTTCCTGGGCACATGAGGTAATTTCCTGTGCAGTGAGTTGGGATACTTTGGCACAGCTCCTGAAGTGGACTTTTGACAGTCAGTCACCGATTGGTTGATAGATAGGCTAATGCTAGGATGATGCTATCATCTCTGTGCTTTATAGATAATGTCTGTGCACTCTATACTCACCTCATAAACACTGTCTGGATCCAACATCCCCTGTACCTGCACCTGTCCCTATCCTTGCTGCTGTCCCTgccctgtccctgttcctgtctcTAACAGTCAGAACCAACATATTTCTACAATCGCCCTTCAAATCCTTACTTTTGCATTGTGCCAAATCGCTGTAAGTTatcaaaataatataaaataatcgAATTTGCCATGAATAGAAAGTGAATATGAAAAAGAGATGATTAAAAATGACTGATGTGTGTGAGACAACATACTGTGCAAATGCTGATTAGGGGGGCGTGGTATGATTGCTAGTCAGcctattgcagatctggacaaaTGATCCACCAACCACTATTATCCCTATGAATGGTTGATACTGGGCAGGAAaggtgtaccccccccccccccccctgcaaatTTTGAATGTGTACAACAAGCTTGGATTAAAACAAAGACGTGTCATTGTGAATCAGATGCTTTGTAAAAACAGTCTCCGGAACTTTGATGACtagtatatctttttttttttttttactcacgcTTTTGGCTGGAtatgtcaatgtgtagttcatacatgcataatctatgagcagaattactgtcttacctcaattagccacggaatccctagtttgaaagcaaaTGTTTTATGGAAGATGTGTGGagccattttccctacattttcccccacttgggccagccccctagcaattacAGTTCTAGCCAGTGTGCTTCAGCCCCtcaccatttgagtgacagctgcacacacagcagagcgaggGCGAAagcaatgacgtggtgcacatatctgcacatatgtgaTGCAGTACGCAATTttcagggaccacttttggctcgtgagtgCTATTTTCAGAACTGCTTGCTAAAAAGTACACAAAGTACAGGAGAATCTCTAAACAGTGATTTTGTATGATGACTCTTCTCTGTGTAGCCACACTAGGCTTAAGGTTAGTAGATTGTTTAGTAAGTTACTGACAAACTGTCATGTCTGTGTAACAGCAGTGTTGAAGATTGGTCCCTTTATTGGGTCCTTAGCAAGGCTAATGGCATCATCACCCGAAAGGGACATAACATTTAAGAGCAGAGTATCCTGCTTATGGAATTTTCTGACATACTCTTTATCTTATTAGTACTGAGAGGTAAAGTGTCTCTGTGTCCAGCTGCTTTTCTAATTGCCTTTATATTACTATGGCTGAGACCCGGCTTTGCTGTCTGCAAGACCTGAACTCCCAAAGCCCCCATAGCTACCAGTTTACTCCTATTCACAGGGAAATACTCTCTCATCTCAGCGACCTTTCAACACAGACTTCAAAGCAATTTGATTTGCTTTAAGAGATTTAATAACTTTATTGGTCCTCTGCTCAGCTCCCGTATTCAAAACCCTCCCCTTCATTATGAGTCTTGTCAAGCTCGTATGTAGAACATAGTGTACTCTGGGAAACACGGTAAGAGGGTTTAGGGTTTcccaggatgatggtgttgatgtgagacatgacCTGCCTTTCAAgccacttcatggctaccaacatgagtgctacagggcggtagtcttttaggcaggttacctttgctttcttgggcacagg

Function

NR:

description
receptor activity-modifying protein 1-like

GO: NA

KEGG:

id description
K08447 RAMP1; receptor activity modifying protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597373.2 True 3181 mRNA 0.46 3 54365929 54437361

Neighbor

gene id symbol gene type direction distance location
LOC110520209 e41l5 coding upstream 532 54318683 ~ 54365397 (+)
LOC110520208 LOC106586301 coding upstream 48100 54208875 ~ 54317829 (+)
LOC110520205 LOC106586291 coding upstream 216841 54044977 ~ 54149088 (+)
LOC110520204 LOC106586306 coding upstream 375448 53904310 ~ 53990481 (+)
LOC110520202 LOC106586307 coding upstream 482007 53870750 ~ 53883922 (+)
LOC110520220 LOC106586295 coding downstream 231489 54668850 ~ 54672399 (+)
LOC110520222 LOC106586294 coding downstream 235871 54673232 ~ 54689498 (+)
LOC110520223 klf7 coding downstream 422159 54859520 ~ 54931543 (+)
creb1b creb1 coding downstream 556083 54993444 ~ 55001733 (+)
LOC110520225 LOC106586338 coding downstream 584369 55021730 ~ 55045043 (+)
G273801 NA non-coding upstream 191122 54174571 ~ 54174807 (+)
G273287 NA non-coding upstream 229312 54136282 ~ 54136617 (+)
G273276 NA non-coding upstream 243976 54121725 ~ 54121953 (+)
G273989 NA non-coding downstream 66753 54504114 ~ 54505805 (+)
G274076 NA non-coding downstream 181493 54618854 ~ 54653554 (+)
G274056 NA non-coding downstream 183172 54620533 ~ 54659687 (+)
G274057 NA non-coding downstream 210241 54647602 ~ 54660246 (+)
G273094 LOC106586310 other upstream 524312 53841264 ~ 53841617 (+)
G273004 LOC106586313 other upstream 707246 53657461 ~ 53658683 (+)
G272965 NA other upstream 713498 53648825 ~ 53652431 (+)
LOC110520190 LOC106586322 other upstream 1029403 53291284 ~ 53339392 (+)
LOC110520187 LOC106586325 other upstream 1142664 53174264 ~ 53235027 (+)
G274592 NA other downstream 437038 54874399 ~ 54875115 (+)
LOC110520231 dbr1 other downstream 937185 55371759 ~ 55375526 (+)
G275542 LOC106586374 other downstream 1462833 55900194 ~ 55900743 (+)
G275553 LOC107595854 other downstream 1477968 55915329 ~ 55916133 (+)
G277296 NA other downstream 2827206 57264567 ~ 57264892 (+)

Expression


Co-expression Network