LOC110520213 (ube2f)


Basic Information

Item Value
gene id LOC110520213
gene name ube2f
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 54504064 ~ 54594080 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974604.1
TAACGGAACAATCCCTGCACTTCCGTTAATGACACCGGCAGCGGAGTTGTTACAACTGATTGTCAGCTTTTTTACATTTCAGTATTAACATTTCTCATTATATATTTGAGAGGTTGTTTGGCGACGGAAATTCAGTTTTAATCTGTCGCTGCAGGTGCAGCAAGAGGCTTGATTCCGAGTGTCGTTGATTATGGTGTAGAGGGAGCGTTTCTCTGAGACAGCAGAGAGAGCGTAGGGTAGCCATGCTGACGTTGGCCAGTAAACTGAAGAGGGACGAGGGGGtgaagactggcagggcccctgggGGCCCCTCCGACTCCTCTCACAGAGTCTCTATCAGGGACCGGCTGCTCATCAAAGAAGTTGCAGAACTTGAAGCCAACCTTCCTAGTACGTGTAAAGCCAGCTTCCCTGATGAGAACAAGCTACATCACTTTCAGCTGGCTGTCTCTCCAGATGAAGGCTACTATCAGAGTGGAAAATTCCAGTTTGAAATAAACGTCCCTGAAGCTTACAACATGGTGcctcccaaAGTGAAATGTCAGACCAGAATATGGCACCCCAACATCGCTGAGACAGGGGAGATCTGTTTGAGTTTGTTGCGGGAGCACTCTATCGACGGCACTGGCTGGGCCCCTACGAGAACATTAAAGGATGTAGTCTGGGGATTGAACTCCTTGTTTACCGATCTACTGAACTTCGATGACCCATTGAACATCGACGCGGCCGAGCATCATCTGCGCGATAAGGAGGATTTCCGTAATAAGGTTCAAGATTACATCAAGCACTATGCCAGATGATGACTGCGTCAGCTGCGCCGGCTGCCTGCAACCCCCCCTTTCTTCGACTGCGCAGCTGAACCCCGCCCCCTAACGTCTCGTCAACCAACCAACCGCTGCACATTGCTGACACGCCCTGACTGCAATACAATGAcgctgaaagaaaaaaaaagatttacaagaaaaattgttttttaaaagtTTGAGGGATTATGCTTTAATTGCCCTGAGTGGCCTAGAGTAATCATGCTGCGTCACCGCAGGGATTGTCCAATGACGgggcctctctgtgtgtctgagccAATAATAGTGAGCGCATGTGGCAGTGAGGACCCGGGATTTAACCAATCCACTTAGCTGTTATTTAGGAATTGACGAATCAAAGAGAAAGATTCTGTTAGTGTTTCTCAGTTCTAGTGCCTGCCATGTCTGGTTGCAAagaaaatgcacacacacacaatcccttcACACACATTGAAAAGCAAACGCACTCAACTAGTTACTCACAACACACAGCACTTGGTTGTGCATGCACACCCACCCagccacacagaaacacacacagctggAAAAACAACATCTCTGTTATGTCACTCATTCAAGGCCTGCACTCCCCCGCCCACACCCACCTCATCAGACAGCATGTGAATGACAAGTGCCACCGACCCAGTCAGTCCCCATTCTGTTGTCCACTTTACTCAGCGtacgtctgaaatggcacccctTTATATTGCCCTACTTTTAAcaagagccctataggccctggtcagaagtagtgcactacatagggaatagggtaccacttCAGACACTCCCActttctgtctgttctgttcacTCATCCACAGGGGGAACACAATTTACCGGTGCCCCagacacactgtaacactgtCCAGATCAAGCTCCTAGGAAAAGACTCCAGCTGTACCACAGTACAAGTTCTACCACCACACCTGAACCTTGACCTTATCTCAGCTCCCCTGACCTCTGGGGAAGCCAAGCGTAGAGGGCACTGTGCCTCTgatagtctgtctgtcttgctccatccctccatcctgacGTTTCTCCTTCCACTCTCTTAGGCCCCACCACCCTCATGCATTCTCCTCTGCCCCCATGGAGGTAGAGGGAATACGAGGGCTCTCTTCTCTGCTAGGTTGTGTATGAGAGTCCTCTGTTTTGAGGCAAGTGAGTGGGGTCTCCTCTGTATGCATGTCCTCATGTGTCTGAAtgtccccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgagagataTGTAGATCTTTGAGTGTGTGGGTTTGTTGCTTCGCTTTGCCTGGGCTGGCTTTGTGCCTGTATGTGTGCATATTGGAACGTTAGATTCAGTGTCATCACTGTATTAAAAAATTGTATTCACATGTTTGCATGAGGCAAAATGTATGTGGCCAGGAGGTGgtgtattttacagtaggtatgttagaagtgtgtgtgtgtgttcaaatggACAGGGGTTCATGTGACTTGTTTTTAGCATGCTCTGGTTCCTAGCCCCACACTCCTTATTTTACTGGTCCAGCTAGCCTAATTCTCTGTGGGGCTCGGGAGggtctgtctgttcctcagtttaAATCCTCCTTTTTTTTTCTCAGATTGTATATCCATTTTTTAAGATATATTAAAGAGGATATAATAAGGAAAAACATGTA

Function

symbol description
ube2f Predicted to enable NEDD8 conjugating enzyme activity. Predicted to be involved in protein neddylation. Predicted to be active in nucleus. Orthologous to human UBE2F (ubiquitin conjugating enzyme E2 F (putative)).

NR:

description
NEDD8-conjugating enzyme UBE2F

GO:

id name namespace
GO:0045116 protein neddylation biological_process
GO:0019788 NEDD8 transferase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K10687 UBE2F; ubiquitin-conjugating enzyme E2 F

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974604.1 True 2499 mRNA 0.48 10 54504064 54594080

Neighbor

gene id symbol gene type direction distance location
LOC110520212 NA coding downstream 74850 54425558 ~ 54429214 (-)
LOC110520207 LOC106586304 coding downstream 312235 54181672 ~ 54191829 (-)
LOC110520203 LOC106586308 coding downstream 610276 53883698 ~ 53893788 (-)
rab3gap1 LOC106586310 coding downstream 639079 53817111 ~ 53864985 (-)
LOC110520198 LOC106586311 coding downstream 757195 53671765 ~ 53746869 (-)
LOC110520216 LOC106586300 coding upstream 23448 54617528 ~ 54624544 (-)
LOC110520218 NA coding upstream 39658 54633738 ~ 54636478 (-)
LOC110520214 LOC106586297 coding upstream 45150 54639230 ~ 54646342 (-)
LOC110520215 LOC106586297 coding upstream 52543 54646623 ~ 54659681 (-)
LOC110520226 LOC106582378 coding upstream 453438 55047518 ~ 55050859 (-)
G274208 NA non-coding downstream 186278 54315329 ~ 54317786 (-)
G274198 NA non-coding downstream 214793 54281582 ~ 54289271 (-)
G274126 NA non-coding downstream 274887 54174850 ~ 54229177 (-)
G273798 NA non-coding downstream 330808 54172998 ~ 54173256 (-)
G274412 NA non-coding upstream 13087 54607167 ~ 54607372 (-)
G274339 LOC106586295 non-coding upstream 75282 54669362 ~ 54678112 (-)
G274531 NA non-coding upstream 214739 54808819 ~ 54809081 (-)
G274536 NA non-coding upstream 220222 54814302 ~ 54814543 (-)
G274538 NA non-coding upstream 225188 54819268 ~ 54819476 (-)
G272713 LOC106586324 other downstream 1252980 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 1795248 52693956 ~ 52708816 (-)
il1rl1 il1rl1 other downstream 2903834 51596933 ~ 51619476 (-)
fgf9 NA other downstream 3029925 51471899 ~ 51478510 (-)
LOC110520160 LOC106586095 other downstream 3374754 51126600 ~ 51130404 (-)
G274344 LOC106586294 other upstream 85838 54679918 ~ 54682805 (-)
LOC110520227 plekhm3 other upstream 509414 55068639 ~ 55122013 (-)
G275250 NA other upstream 816063 55410143 ~ 55411487 (-)
si:dkey-91i10.3 LOC106586420 other upstream 2676702 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 2808904 57402984 ~ 57403575 (-)

Expression


Co-expression Network