Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110520213 |
| gene name | ube2f |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 54504064 ~ 54594080 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| ube2f | Predicted to enable NEDD8 conjugating enzyme activity. Predicted to be involved in protein neddylation. Predicted to be active in nucleus. Orthologous to human UBE2F (ubiquitin conjugating enzyme E2 F (putative)). |
| description |
|---|
| NEDD8-conjugating enzyme UBE2F |
| id | name | namespace |
|---|---|---|
| GO:0045116 | protein neddylation | biological_process |
| GO:0019788 | NEDD8 transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| id | description |
|---|---|
| K10687 | UBE2F; ubiquitin-conjugating enzyme E2 F |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036974604.1 | True | 2499 | mRNA | 0.48 | 10 | 54504064 | 54594080 |
54,460,000
54,470,000
54,480,000
54,490,000
54,500,000
54,510,000
54,520,000
54,530,000
54,540,000
54,550,000
54,550,000
54,560,000
54,570,000
54,580,000
54,590,000
54,600,000
54,610,000
54,620,000
54,630,000
54,640,000
NC_048567.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110520212 | NA | coding | downstream | 74850 | 54425558 ~ 54429214 (-) |
| LOC110520207 | LOC106586304 | coding | downstream | 312235 | 54181672 ~ 54191829 (-) |
| LOC110520203 | LOC106586308 | coding | downstream | 610276 | 53883698 ~ 53893788 (-) |
| rab3gap1 | LOC106586310 | coding | downstream | 639079 | 53817111 ~ 53864985 (-) |
| LOC110520198 | LOC106586311 | coding | downstream | 757195 | 53671765 ~ 53746869 (-) |
| LOC110520216 | LOC106586300 | coding | upstream | 23448 | 54617528 ~ 54624544 (-) |
| LOC110520218 | NA | coding | upstream | 39658 | 54633738 ~ 54636478 (-) |
| LOC110520214 | LOC106586297 | coding | upstream | 45150 | 54639230 ~ 54646342 (-) |
| LOC110520215 | LOC106586297 | coding | upstream | 52543 | 54646623 ~ 54659681 (-) |
| LOC110520226 | LOC106582378 | coding | upstream | 453438 | 55047518 ~ 55050859 (-) |
| G274208 | NA | non-coding | downstream | 186278 | 54315329 ~ 54317786 (-) |
| G274198 | NA | non-coding | downstream | 214793 | 54281582 ~ 54289271 (-) |
| G274126 | NA | non-coding | downstream | 274887 | 54174850 ~ 54229177 (-) |
| G273798 | NA | non-coding | downstream | 330808 | 54172998 ~ 54173256 (-) |
| G274412 | NA | non-coding | upstream | 13087 | 54607167 ~ 54607372 (-) |
| G274339 | LOC106586295 | non-coding | upstream | 75282 | 54669362 ~ 54678112 (-) |
| G274531 | NA | non-coding | upstream | 214739 | 54808819 ~ 54809081 (-) |
| G274536 | NA | non-coding | upstream | 220222 | 54814302 ~ 54814543 (-) |
| G274538 | NA | non-coding | upstream | 225188 | 54819268 ~ 54819476 (-) |
| G272713 | LOC106586324 | other | downstream | 1252980 | 53249926 ~ 53251084 (-) |
| LOC110520182 | NA | other | downstream | 1795248 | 52693956 ~ 52708816 (-) |
| il1rl1 | il1rl1 | other | downstream | 2903834 | 51596933 ~ 51619476 (-) |
| fgf9 | NA | other | downstream | 3029925 | 51471899 ~ 51478510 (-) |
| LOC110520160 | LOC106586095 | other | downstream | 3374754 | 51126600 ~ 51130404 (-) |
| G274344 | LOC106586294 | other | upstream | 85838 | 54679918 ~ 54682805 (-) |
| LOC110520227 | plekhm3 | other | upstream | 509414 | 55068639 ~ 55122013 (-) |
| G275250 | NA | other | upstream | 816063 | 55410143 ~ 55411487 (-) |
| si:dkey-91i10.3 | LOC106586420 | other | upstream | 2676702 | 57270782 ~ 57297762 (-) |
| G277673 | LOC106586423 | other | upstream | 2808904 | 57402984 ~ 57403575 (-) |
