LOC110520214 (LOC106586297)


Basic Information

Item Value
gene id LOC110520214
gene name LOC106586297
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 54639230 ~ 54646342 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597375.2
GCATATGGCTATTTGGACAATCTGGGCACACTTCCGGTAAAACTGTGAGAGGGACCTGGCAACTTTGCTTACGTGGAATTTTCAGCTGAGAGAGAAACACATATGGCTTTACAAGCTCCATTGCATTTTGGAAGATCCTAGTGAAGGAGCAGatcagtctctgtgtctgtgtctctgtgtctctgctgaGTCACTGCAAGCTGGAAGGAGCACTAGGCTAGCTGCGCAGACGACAGCAGAGCACCATGACCTACCGGCTGTTTGAGGAGAAACACCATGCCTCCATCTACCAGAGGTACCGCTTTGTACCCCCAGAGGAGATCAGAGACATCATCCTGCATTACCTGGAAAGGAAGAAAGTCCAGCCTCATGCCCTAGCTGTGGACCTGGGATGTGGGACGGGGCAGAACTCACGCCTGATGGCCCCACACTTCCAGGAAGTGGTGGGCATCGACATCAGCGAGTGCCAACTGGAGGAGGCCAGGGCAGTGGCAGGGTTCAACAACATCACCTACAGGAAAGGGACAGCTGAAGAGCTGCCGTTTCCGGATGCTTCTGTGGACCTACTGACTGCAGCCTCAGCGGCCCATTGGTTTGACCAGCAGCGGTTCCTCTTGGAGGCAGGTCGGGTCCTGAAGCCTTGCGGCTGCATGGCTCTGCTTGGCTTTGCTGATAACTTCAGACTCCATTACGGCTCATGTGGGGACAGACTCACTGACATCTGTGATGAGTTCAAGAAGGTGCTGTTACCATACACCAGCACACAGGTAGCAGTGGCCAACACCAAACTACAGGAGCTTTACACTGCTATCCCCTTCCCTGACAAAGAGAGGATTGAGTGTATCCCACTGAAGCAGCAGATCTCAGTGAGGAACATAGTGGGCTTCATGGAGTCCTTCTCCATGTACCAGGCCTTCCAGAGGGCCGAGCCTGATGCTGCCAACGCACTGCTGCAGAGAACACTCGACAGGTTTCTGAAGGAGATGGGAGTCACATCACCAGACACACTCATGGAAGTGACGCTGGAGTATTTCTGTGTTCTGGCGTCTAAACCGGAGTGAACACTCTTTACagtgtgaatgtgtttgtgtgtagacaGATGTGTTTTAAGCTTGTGTTTAGGCTTGTGTCAATCATGTTCAAGCTGATACTAGAAATGTTATTCTGTTCACATAAGATGTCATTGAAGTCCCTTTGGTTTTGTCTCTTCTTTTATATGTTGTAATGTAGAGCAAACTATTCACCTTAGTCACATCATTACCAAAATGCTTGCCACCTTCAGTATCTTCCTTGCCTGAGATTGACAATAAAATGTCTGCAGACACAATTGTAAA

Function

NR:

description
putative methyltransferase DDB_G0268948

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597375.2 True 1334 mRNA 0.50 7 54639230 54646342

Neighbor

gene id symbol gene type direction distance location
LOC110520218 NA coding downstream 2752 54633738 ~ 54636478 (-)
LOC110520216 LOC106586300 coding downstream 14686 54617528 ~ 54624544 (-)
LOC110520213 ube2f coding downstream 45150 54504064 ~ 54594080 (-)
LOC110520212 NA coding downstream 210016 54425558 ~ 54429214 (-)
LOC110520207 LOC106586304 coding downstream 447401 54181672 ~ 54191829 (-)
LOC110520215 LOC106586297 coding upstream 281 54646623 ~ 54659681 (-)
LOC110520226 LOC106582378 coding upstream 401176 55047518 ~ 55050859 (-)
LOC110520227 plekhm3 coding upstream 425451 55068639 ~ 55122013 (-)
idh1 LOC106586335 coding upstream 485052 55131394 ~ 55146388 (-)
armc8 armc8 coding upstream 711025 55357367 ~ 55371667 (-)
G274412 NA non-coding downstream 31858 54607167 ~ 54607372 (-)
G274208 NA non-coding downstream 321444 54315329 ~ 54317786 (-)
G274198 NA non-coding downstream 349959 54281582 ~ 54289271 (-)
G274126 NA non-coding downstream 410053 54174850 ~ 54229177 (-)
G274339 LOC106586295 non-coding upstream 23020 54669362 ~ 54678112 (-)
G274531 NA non-coding upstream 162477 54808819 ~ 54809081 (-)
G274536 NA non-coding upstream 167960 54814302 ~ 54814543 (-)
G274538 NA non-coding upstream 172926 54819268 ~ 54819476 (-)
G274552 NA non-coding upstream 184263 54830605 ~ 54831374 (-)
G272713 LOC106586324 other downstream 1388146 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 1930414 52693956 ~ 52708816 (-)
il1rl1 il1rl1 other downstream 3039000 51596933 ~ 51619476 (-)
fgf9 NA other downstream 3165091 51471899 ~ 51478510 (-)
LOC110520160 LOC106586095 other downstream 3509920 51126600 ~ 51130404 (-)
G274344 LOC106586294 other upstream 33576 54679918 ~ 54682805 (-)
G275250 NA other upstream 763801 55410143 ~ 55411487 (-)
si:dkey-91i10.3 LOC106586420 other upstream 2624440 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 2756642 57402984 ~ 57403575 (-)

Expression


Co-expression Network