LOC110520220 (LOC106586295)


Basic Information

Item Value
gene id LOC110520220
gene name LOC106586295
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 54668850 ~ 54672399 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597380.2
TTCAATGTAAGAATGTGCTCtgctccgtctctctgtctggagtTGTTTCTCAGATATTGGTGGAACTGGAGTTAAATGTCAGGTCATGGACCACATTGTGGTTATTCAGTGGTGGATCCTGTTATGCATATCAGGGAATTCTGCTGAGGtgatgaagaggagcATCTTCTTGATCTCTGGTCAGACAGAGAGTGTGCACCTGTCTGTGTCAGACCTGGCTCAACCTCACTGGTCAGAGTTCAGCTGGGAGTGGACCTCACATGATGGGAGATACTCAGAGATTCAAATAGCCAGAGCAATATCCTCTAGGCTAGTGGTTAGTCCACCTTTCACAGAGTACTTTTCTTGCAGCAAAGACTTTGACGTAACAGTGAAGCCGAAGTTTGAATGTGCAGGGGTGTTTTTGTTGGTAAGAGCAAATGTCCCATTGGTTAAGATTGAGATCTTCACCACAAAAATTACACCTTCCTTTTGGCCTTCATTTCGTCTGGGTTCTGATGTGAGTGTTAGTTGCGAGGTGTCCAGCCTACCAGATGGGGCCACACTGCagtgggaaagagatggagattCCACTTCTATCACCACGCTGTTCTACAACAACACTGTCCACATGATCATCCGCAGTGTTCATCCGGACAGTCAGGGGGCATACTACTGCACTTTTAGACAGAATGGAACACTGTTATATAATGTCTCTAATGCTGTCAGAATTGAGGAAGTTTCGTCTGATGCCACTCTCACAATGTACAGAGAGAGCTCCAACAGCTCTCTGGTGACACTGCTTTGTATGACATCAGATGAGTACATCCATGCATCATGGTCCTGGACCCCATTATCTACAGCTAAAGAGGTTCACCTTGTGAGAACTACAATGTACGGCTCCAATGACACGTTTAATGAGAGATTTTCATACGGGGACTTCAATGGATACTACTTCCCTCTCTACTTCTCACCAGTGAAGTTTGAAGATTCTGGAAGGTTCAATTGCTATTTTGAAAACCTCCTAGTTGCCTCTATCAATGTGGTAACCCTAAAGGTCTCTGCAGTTCCGCCTAGTGGATTCCCCAGGAATCATCCGGTGGTCCTGAGATGTGAGGTGTCGGAGGTGAGCACCGACCCTGTGACCCTAGCCTGGCTGAGGATGGAAGGGAGCAGGGGGCTGCTGGTCAAACaggacatcctgacagagagtcACCCCAACAGGATGCTCAGTGTGACCCTGCCCAGCCTCCATAGGGACCAGCTGCACTGGCAGTGTGCTGTGTTCACAGAGGGCATGCTCAGAGCGACAGCCTCCCTGACCCTCACACTCCCCACACAGACAAAAATGTCTTCAATGACAGGGATGGGCACCGAGACAGTGGTGAGAGGGGTGATTACAATGGCTGCCACCCTAGGAATTCTGGGACTTCTCGGGTTCTACTGTCGAAGACCAAACGGcacccagacacagagacaaaaggAGGAACCTGCTCAACTGCAGGAGACTGGTGTATAGCCTTCTTGCTAGCCTATGGCCTGTGTCTGTGTTGAAATATAGCTTTCCCACCCATGTCTGTACCAACTAGTAACATCTTTCACACATTACCACATGTCACACTGTTTTCTGTCAAAAGGTCTGGCAATAGAAACTTCACTGGTGTTAAAATAATGTGTTATCCACCAACAACCTTCCCTTCAAATACTAATATTGAAAACATGACcatgttatgatactgtaagcATCTTTCCAAAAGACCTAAATAATTTACacagagtgcacaaaacattaggaacacctgctctttccatgatatagactgaccaggtgaatccagatgaaagctatgatcccttattgatgtcacgtgTTAAATCCACTTTGATCAGCGTaaataaaggggaggagacaggttaaagaaggattcttgagacaattgagacatggattgtgtatgtgtggcattcagagggtgaacagtCAAGACAAAATAGTAAtgtttttacactcagtgtatattatttAGTTCATCCTAGAAATGTACATTTCCATTCATCCTCAGTCTGTAATGTTTGTACACAATAAATGGGGATGTTAAT

Function

NR:

description
uncharacterized protein LOC110520220

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597380.2 True 2079 mRNA 0.46 7 54668850 54672399

Neighbor

gene id symbol gene type direction distance location
LOC110520210 LOC106586303 coding upstream 231489 54365929 ~ 54437361 (+)
LOC110520209 e41l5 coding upstream 303453 54318683 ~ 54365397 (+)
LOC110520208 LOC106586301 coding upstream 351021 54208875 ~ 54317829 (+)
LOC110520205 LOC106586291 coding upstream 519762 54044977 ~ 54149088 (+)
LOC110520204 LOC106586306 coding upstream 678369 53904310 ~ 53990481 (+)
LOC110520222 LOC106586294 coding downstream 833 54673232 ~ 54689498 (+)
LOC110520223 klf7 coding downstream 187121 54859520 ~ 54931543 (+)
creb1b creb1 coding downstream 321045 54993444 ~ 55001733 (+)
LOC110520225 LOC106586338 coding downstream 349331 55021730 ~ 55045043 (+)
kcnh3 LOC103481844 coding downstream 485044 55157443 ~ 55355650 (+)
G274057 NA non-coding upstream 8604 54647602 ~ 54660246 (+)
G274056 NA non-coding upstream 9163 54620533 ~ 54659687 (+)
G274076 NA non-coding upstream 15296 54618854 ~ 54653554 (+)
G273989 NA non-coding upstream 163045 54504114 ~ 54505805 (+)
G274449 NA non-coding downstream 54398 54726797 ~ 54727010 (+)
G274458 NA non-coding downstream 60970 54733369 ~ 54733684 (+)
G274459 NA non-coding downstream 61899 54734298 ~ 54788327 (+)
G274525 NA non-coding downstream 124879 54797278 ~ 54797495 (+)
G273094 LOC106586310 other upstream 827233 53841264 ~ 53841617 (+)
G273004 LOC106586313 other upstream 1010167 53657461 ~ 53658683 (+)
G272965 NA other upstream 1016419 53648825 ~ 53652431 (+)
LOC110520190 LOC106586322 other upstream 1332324 53291284 ~ 53339392 (+)
LOC110520187 LOC106586325 other upstream 1445585 53174264 ~ 53235027 (+)
G274592 NA other downstream 202000 54874399 ~ 54875115 (+)
LOC110520231 dbr1 other downstream 702147 55371759 ~ 55375526 (+)
G275542 LOC106586374 other downstream 1227795 55900194 ~ 55900743 (+)
G275553 LOC107595854 other downstream 1242930 55915329 ~ 55916133 (+)
G277296 NA other downstream 2592168 57264567 ~ 57264892 (+)

Expression


Co-expression Network