LOC110520222 (LOC106586294)


Basic Information

Item Value
gene id LOC110520222
gene name LOC106586294
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 54673232 ~ 54689498 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974611.1
TCAGTCATTTCCTGAACCTATTTATCAGAGATGTCAGTAATGATATGAGTTGGCTACTGAGTAGATAcgggaacagaacagtaacataCAGCAACATGGGGCAGTACAGTGGCTCTATGGGTGTAACGTTGTTGTGGGTTCTGCTGTGGATATCTAGATCCGGTCAGGGACTCTCAGCTGAACAATTGTCAACGAAGATATTTTTCCTTGCCGAGACCAATACCAGTAACAGAGTCACTCTCCAAGTTCCCCCTGCAGTTCTGAAAGGGACAGCACACCAATGGATGTGGACCTCACATGATGGCAGACACTCAAACACTTCAGTAGCCCAAATCACTTCCTCCATGAGTAGAAATCCTTCATGGAACACACAGGCTCCTTTCTCACAAGGAACAGGATATCTGTCTATGCAAACAAAATATGAAAATGCTGGAGAGTTTGTGCTCATGCAAACCAAACCAGCTTCAGCAGTTCTGGCGAGATTTGAGGTGTTTAGTTTTGTGGTTAAAGCGACACCAAACTATAACGGTAATGAAGTGTATCTGGGTTCTGATGTGAGTGTGCGTTGCGAGGTGTCCCACATACCAGATGGGGCCACACTGCAGTGGGAAATAGATGGAGATTCCACATCTAACACCACGCTGTTCTACAACAAAACGGCCCATATGATCATCCACACTGTCGATCAGAATTACCAGGGGAGATCTAACTGCAATTTCAGACTGAATGGAGAATTGTTGTTTAGAGATTATACTACACTGTCTGTACAAACAGGCACATTTAATAACCCATATCATCTGTTTCGAGAGAGCAGCAACAGCAGTGAGGTGAAGTTGATCTGCAGGTCAAGGTCCTCATACAGCAGAGCCAAATGGATCATGAGCAGATCACCAACATCTGTTACTCTGACTTCATCAGACAAAGTCAGAAGTGACCGATTCTCATCTCCCTCATTCAACGGATATGATTTCCCACTGCATGTCTCACCAGTGACATTTGAGGATAGTGGAGTTTTCACATGTTTCTTTGAAGACCACAGGTTCAGCTCGGTTAAAATCACAACCATTCGAGTATCTGAATCTGGAGGGCCCCCTGGTGGCCAGCCCGTGGTGGTGAGGTGTGAGGTGTCGGAGGTGAGCACCGACCCTGTGACCCTGGCCTGGATGAGGATGGAGGGGAGCAGGTGGCTGCTGGTCAAACAGGACGTCCTGACAAAGAGTCATCCTAACAGGACGCTCAGTGTGACCCTGCCCAGCCTCCATAGGGACCAGCTGCACTGGCAGTGTGCTGTGTTCACAGAGGGCATGCTCAGAGCGACAGCCTCCCTGACCCTCACACTCCCCACACAGACAAAAATGTCTTCAATGACAGGGATGGGCACCGAGACAGTGGTCAGAGGGGTGATTACAATGGCTGCCACCGTAGGAATTCTGGGACTTCTTGGGCTCTACTGTCGAAGACCAAACGGcacccagacacagagacaaaaggAGGAACCTGCTCAACTGGAGGAGACTAGTGTATAGCCTTGTTGCTAGCCTATGGCCTGTGGCTGTGTTGAAATATAGCTTTACCACCCATGTCTGTACCAACCAGTGACGTCTTTCACACTGAATTACCACATGTCACACTGTGTTCTGTCAAAAGGTCTGGCAATAGAAACTTCACTGGTGTTAAAATAATGTGTTAACCACCAACAACCTTCCCCTCAAAGACTAATATTGAAAACATGACcatgttatgatactgtaagcATCTTTCCAAAAGACCTAAATAATTTACACTGACTGcattaaacattaggaacacctgctttcCATGATATagtctgaccaggtgaatccagatgaaagctatgatcccttattgatgttacttgttaaatccactttgatcagcgtagataaaggggaggagacaggttaaagaaggattcttgagacaattgagacatggattgtgtatctgtggcattcagagggtgaacggtcAAGACAAAATAGTAATGTTTTTACACTCAATGTATATTATTTAGTTCATCCTAGAAATGTACATTTCCATTCATCCTCAGTCTGTAATGTTTGTACACAATAAATGGGGATGTTAATACTAGTTTGTCAACAGTGTCTCAGTTTATTTTACCATCTGATTGTCCTGTATTAGGAAAGCTTTGAACTTTGAATGGACTGTTGTAAGAGACTGGCTATAATGTAGCAAGTTAGGCCTTTTGGTTTTGAAAGCCTTTGGTTGCATTTGGACATCATGGTCTTTGGAATTTCAAAATATTCACTGTTTGCTTCAAGAGGAAAATGTCTTGTTTCCATATTAAT
>XM_036974610.1
CAGTCATTTCCTGAACCTATTTATCAGAGATGTCAGTAATGATATGAGTTGGCTACTGAGTAGATAcgggaacagaacagtaacataCAGCAACATGGGGCAGTACAGTGGCTCTATGGGTGTAACGTTGTTGTGGGTTCTGCTGTGGATATCTAGATCCGGTCAGGGACTCTCAGCTGAACAATTGTCAACGAAGATATTTTTCCTTGCCGAGACCAATACCAGTAACAGAGTCACTCTCCAAGTTCCCCCTGCAGTTCTGAAAGGGACAGCACACCAATGGATGTGGACCTCACATGATGGCAGACACTCAAACACTTCAGTAGCCCAAATCACTTCCTCCATGAGTAGAAATCCTTCATGGAACACACAGGCTCCTTTCTCACAAGGAACAGGATATCTGTCTATGCAAACAAAATATGAAAATGCTGGAGAGTTTGTGCTCATGCAAACCAAACCAGCTTCAGCAGTTCTGGCGAGATTTGAGGTGTTTAGTTTTGTGGTTAAAGCGACACCAAACTATAACGGTAATGAAGTGTATCTGGGTTCTGATGTGAGTGTGCGTTGCGAGGTGTCCCACATACCAGATGGGGCCACACTGCAGTGGGAAATAGATGGAGATTCCACATCTAACACCACGCTGTTCTACAACAAAACGGCCCATATGATCATCCACACTGTCGATCAGAATTACCAGGGGAGATCTAACTGCAATTTCAGACTGAATGGAGAATTGTTGTTTAGAGATTATACTACACTGTCTGTACAAACAGGCACATTTAATAACCCATTGATACATCTGTTTCGAGAGAGCAGCAACAGCAGTGAGGTGAAGTTGATCTGCAGGTCAAGGTCCTCATACAGCAGAGCCAAATGGATCATGAGCAGATCACCAACATCTGTTACTCTGACTTCATCAGACAAAGTCAGAAGTGACCGATTCTCATCTCCCTCATTCAACGGATATGATTTCCCACTGCATGTCTCACCAGTGACATTTGAGGATAGTGGAGTTTTCACATGTTTATTTGAAGACCAGAGGTTCAGCTCGGTTAAAATCACAACCATTCGAGTATCTGAATCTGGAGGGCCCCCTGGTGGCCAGCCCGTGGTGGTGAGGTGTGAGGTGTCGGAGGTGAGCACCGACCCTGTGACCCTGGCCTGGATGAGGATGGAGGGGAGCAGGTGGCTGCTGGTCAAACaggacatcctgacagagagtcACCCCACCAGGACGCTCAGTGTGACCCTGCCCAGCCTCCGTAGCGACCAGCTGCACTGGCAGTGTGCTGTGTTCACAGAGGGCATGCTCAGAGCGACAGCCTCCCTGACCCTCACACTCCCCACACAGACAACAATGTCATCAATGACAGATGACCATCTGTGGACTGTGGCCATTGTGGCCTGCATTGCTATGGTTGTTGCTGGGGTCCTGGTTGGTGCTCTGGTGTTCTACCTGAAGAGGAAGAAGACAGCTGTGACGAACCTACCGCTGACCCAGAAGAATGACCCAGTCTACGATAACGCCACAGATCCACGAAGAGACCAAGAGAGCCAGAAGGGTCAAACAGGGGAAGATGAGAATGAGGAAGTTCATTACTCTGAATTTGCTTTGGGTGAACCCAGGCTTGGtgATACCAACAGAGTCACAGCAAGGTCAAATCAGGAAAGTGCTGTGATCTATTCAACTCTCAACATATAAGGACAATTACCCATGTTAAGTTTCAGGGATTGTGTTCCACATTTTGACAATGACTTAATGTGTATTAGTCTACAGAGAAAATTAAACCACAATACTGATTGCTTTTAAAATTATGCTATATGCCAGTTACCTTTCATTTTAAGCCTATGAGATTTGTTCAATTAGTTTATTATACTGCTTTTGATTCGTGCATTTAATGATACAGTAATGTATGCTTACTAAGACTGCTGTGTAAATACAGCAGCTAGCCCAATTGGAGGGTTTACATTTTGGTCTGAAATATTGATGGCTGTAACCTACAAATAATAGTTGTATATATTTGTAGTCTTTCATGCATGTGCATTTTGTATGTTTCATTCGATatgtttaaataaaaatgtttttcgTCATTTGATGT
>XM_021597383.2
CAGTCATTTCCTGAACCTATTTATCAGAGATGTCAGTAATGATATGAGTTGGCTACTGAGTAGATAcgggaacagaacagtaacataCAGCAACATGGGGCAGTACAGTGGCTCTATGGGTGTAACGTTGTTGTGGGTTCTGCTGTGGATATCTAGATCCGGTCAGGGACTCTCAGCTGAACAATTGTCAACGAAGATATTTTTCCTTGCCGAGACCAATACCAATAACAGAGTCACTCTCCAAGTTCCCCCTGCAGTTCTGAAAGGGACAGCACACCAATGGATGTGGACCGCACATGATGGCAGACACTCAAACACTTCAGTAGCCCAAATCACTTCCTCCATGAGTAGAAATCCTTCATGGAACACACAGGCTCCTTTCTCACAAGGAACAGGATATGACCTGTCTATGCTAACAAAATATGAAAATGCTGGAGAGTTTGTGCTCATGCAAACCAAACCAGCTTCAGCAGTTCTGGCGAGATTTGAGGTGTTTAGTTTTGTGGTTAAAGCGACATCAAACTATAAAGGTAATGAAGTGTATCTGGGTTCTGATGTGAGTGTGCGTTGCGAGGTGTCCCACATACCAGATGGGGCCACACTGCAGTGGGAAAGACATGGAGATTCCACATCTAACACCACGCTGTTCTACAACAAAACGGCCCATATGATCATCCACACTGTCGATCAGAATTACCAGGGGAGATCTAACTGCAATTTCAGACTGAATGGAGAATTGTTGTTTAGAGTTCATACTACACTGTCTGTACAAACAGGCACATTTAATAACCCATTGATACATCTGTTTCGAGAGAGCAGCAACAGCAGTGAGGTGAAGTTGATCTGCAGGTCAAGGTCCTCATACAGCAGAGCCAAATGGATCATGAGCAGATCACCAACATCTGTTACTCTGACTTCATCAGACAAAGTCAGAAGTGACCGATTCTCATCTCCCTCATTCAACGGATATGATTTCCCACTGCATGTCTCACCAGTGACATTTGAGGATAGTGGAGTTTTCACATGTTTATTTGAAGACCAGAGGTTCAGCTCGGTTAAAATCACAACCATTCGAGTATCTGAATCTGGAGGGCCCCCTGGTGGCCAGCCCGTGGTGGTGAGGTGTGAGGTGTCGGAGGTGAGCACCGACCCTGTGACCCTGGCCTGGATGAGGATGGAGGGGAGCAGGTGGCTGCTGGTCAAACaggacatcctgacagagagtcACCCCACCAGGACGCTCAGTGTGACCCTGCCCAGCCTCCGTAGCGACCAGCTGCACTGGCAGTGTGCTGTGTTCACAGAGGGCATGCTCAGAGCGACAGCCTCCCTGACCCTCACACTCCCCACACAGACAACAATGTCATCAATGACAGATGACCATCTGTGGACTGTGGCCATTGTGGCCTGCATTGCTATGGTTGTTGCTGGGGTCCTGGTTGGTGCTCTGGTGTTCTACCTGAAGAGGAAGAAGACAGCTGTGACGAACCTACCGCTGACCCAGAAGAATGACCCAGTCTACGATAACGCCACAGATCCACGAAGAGACCAAGAGAGCCAGAAGGGTCAAACAGGGGAAGATGAGAATGAGGAAGTTCATTACTCTGAATTTGCTTTGGGTGAACCCAGGCTTGGtgATACCAACAGAGTCACAGCAAGGTCAAATCAGGAAAGTGCTGTGATCTATTCAACTCTCAACATATAAGGACAATTACCCATGTTAAGTTTCAGGGATTGTGTTCCACATTTTGACAATGACTTAATGTGTATTAGTCTACAGAGAAAATTAAACCACAATACTGATTGCTTTTAAAATTATGCTATATGCCAGTTACCTTTCATTTTAAGCCTATGAGATTTGTTCAATTAGTTTATTATACTGCTTTTGATTCGTGCATTTAATGATACAGTAATGTATGCTTACTAAGACTGCTGTGTAAATACAGCAGCTAGCCCAATTGGAGGGTTTACATTTTGGTCTGAAATATTGATGGCTGTAACCTACAAATAATAGTTGTATATATTTGTAGTCTTTCATGCATGTGCATTTTGTATGTTTCATTCGATatgtttaaataaaaatgtttttcgTCATTTGATGT
>TU311208
AGCTGTGACGAACCTACCGCTGACCCAGAAGAATGACCCAGTCTACGATAACGCCACAGATCCACGAAGAGACCAAGAGAGCCAGAAGGGTCAAACAGGGGAAGATGAGAATGAGGAAGTTCATTACTCTGAATTTGCTTTGGGTGAACCCAGGCTTGGtgATACCAACAGAGTCACAGCAAGGTCAAATCAGGAAAGTGCTGTGATCTATTCAACTCTCAACATATAAGGACAATTACCCATGTTAAGTTTCAGGGATTGTGTTCCACATTTTGACAATGACTTAATGTGTATTAGTCTACAGAGAAAATTAAACCACAATACTGATTGCTTTTAAAATTATGCTATATGC

Function

NR:

description
uncharacterized protein LOC110520222 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974611.1 False 2330 mRNA 0.44 7 54673232 54677914
XM_036974610.1 False 2099 mRNA 0.45 10 54673233 54689498
XM_021597383.2 False 2102 mRNA 0.45 10 54680048 54689498
TU311208 True 352 lncRNA 0.41 4 54684846 54689224

Neighbor

gene id symbol gene type direction distance location
LOC110520220 LOC106586295 coding upstream 833 54668850 ~ 54672399 (+)
LOC110520210 LOC106586303 coding upstream 235871 54365929 ~ 54437361 (+)
LOC110520209 e41l5 coding upstream 307835 54318683 ~ 54365397 (+)
LOC110520208 LOC106586301 coding upstream 355403 54208875 ~ 54317829 (+)
LOC110520205 LOC106586291 coding upstream 524144 54044977 ~ 54149088 (+)
LOC110520223 klf7 coding downstream 170022 54859520 ~ 54931543 (+)
creb1b creb1 coding downstream 303946 54993444 ~ 55001733 (+)
LOC110520225 LOC106586338 coding downstream 332232 55021730 ~ 55045043 (+)
kcnh3 LOC103481844 coding downstream 467945 55157443 ~ 55355650 (+)
LOC110520231 dbr1 coding downstream 682261 55371759 ~ 55375526 (+)
G274057 NA non-coding upstream 12986 54647602 ~ 54660246 (+)
G274056 NA non-coding upstream 13545 54620533 ~ 54659687 (+)
G274076 NA non-coding upstream 19678 54618854 ~ 54653554 (+)
G273989 NA non-coding upstream 167427 54504114 ~ 54505805 (+)
G274449 NA non-coding downstream 37299 54726797 ~ 54727010 (+)
G274458 NA non-coding downstream 43871 54733369 ~ 54733684 (+)
G274459 NA non-coding downstream 44800 54734298 ~ 54788327 (+)
G274525 NA non-coding downstream 107780 54797278 ~ 54797495 (+)
G274583 NA non-coding downstream 175099 54864597 ~ 54865143 (+)
G273094 LOC106586310 other upstream 831615 53841264 ~ 53841617 (+)
G273004 LOC106586313 other upstream 1014549 53657461 ~ 53658683 (+)
G272965 NA other upstream 1020801 53648825 ~ 53652431 (+)
LOC110520190 LOC106586322 other upstream 1336706 53291284 ~ 53339392 (+)
LOC110520187 LOC106586325 other upstream 1449967 53174264 ~ 53235027 (+)
G274592 NA other downstream 184901 54874399 ~ 54875115 (+)
G275542 LOC106586374 other downstream 1210696 55900194 ~ 55900743 (+)
G275553 LOC107595854 other downstream 1225831 55915329 ~ 55916133 (+)
G277296 NA other downstream 2575069 57264567 ~ 57264892 (+)

Expression


Co-expression Network