LOC110520226 (LOC106582378)


Basic Information

Item Value
gene id LOC110520226
gene name LOC106582378
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55047518 ~ 55050859 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597393.2
GGGTAATGAAACCGAGTGCTCGAGGACTGGCGCTCTGGATGAGGTGGGCGTTCTGTAGCGGGACGAGAGGGGTCTCCTGAGTTATTTCGGCTCGAGCGCAGTGAGATGTGTAGCGCAACACAGTGATACCTGCTAATATCATTGGATACAAATTTGGAAAACAAGTGCTTTAGTTTGGAATAAAACGTCTTTGTGGTTATCCAAGTGATCGGACAAAGGCAAGCGTAACAAGTTTCCCAAACTTTAGATAGAGAGGAGTGTAAACCTGTTTTCTACCTCTACATTAGGAACCCGAGAGCTGCTGCATAAAGAGTGGATTCTGTTTTTGTTGGATTTTAATCTGGACTTCAAATTAAACACATTATTTTCCTAAAATTTCTTCAAATATTTTTGCTTCCAACTGTTTTTATTGAGTAGAGAGCCTGTGACCGAGGCACGGGTGACTTCACCTGTCATGCGGAATACAAACTGTAGGAATATGAAATCGTTTCCGGATTAAGCCTGCGGTTACAGTTGTTACATTTATTGGCGCGTGACCTAACTGCAAGTAAAGAGGAAATTCAATTTTCAACTCATGTAATTGTAAAGCTCGGTGAATGATTTACAATTCGACCTCTTTAGACCCTCGACTTGGTGCTTTAGTCCATCTTTCGAAATCCTCACACATGTTTAATTGATTCGTTGGATTAAACAACAGTGAACGTTTATTTAGATTTTTCCCGGACCTTTACTGCATTTATAATCACCATGGTTCATTCGAAAGGTGCTCATGCTGTTGGAACATAAACTTGTGGTCTGGAATGAAACTTGTCGGTGATTTATAGAACAGAGGACTCTGGGCATGCTGCTGGAGCAATTACTCTCTCCTGGGATTTCATATTTCCGAGATGCAGTCATAAATTAAAGGAAGGACTGAGCTGAGAAAATACTCAAGTTCACAGCACACAGTGCAATTTTTCTACCTATATTTCTTTCTGGAAATATCCCACTTTCCAATGGCGACCACAGTAAAACCCCCGCTATGCGGTGTCGTCCGTTGGCTGCTCGTGCTGCTCCTCTCCCAGCTGCCCCGGCTCGCACAAACTGCCTCCAAGGATATAGTGTGTGAGCCCATCACGGTGCCCATGTGTAAGGGCATCGGATACAACCTCACCTACATGCCCAACCAGTTCAACCACGACACCCAGGAGGAGGTGGGCTTGGAGGTCCATCAGTTCTGGCCCCTGGTCCGCATCCACTGCTCCCCAGACCTGCTCTTCTTCCTGTGTTCCATGTACACCCCTATCTGTCTGCAGGACTACAAGAAGCCCCTGCCCCCCTGCCGCTCTGTATGTGAGCGGGCCAAGCGAGGCTGCTCCCCCCTCATGATCCAGTATGGTTTTGAGTGGCCAGAGAGGATGAGCTGTGAGCAGCTGCCTCAGCTGGGAGACGAGACTCTGTGTATGGACCAGAATAGTAGCGAGACCACCACCCTTTCCCCTCCCTTGCCCAAACCCACCCCCAAAGGCACCCGCCGAAGGCAGCCCGCCCCCAAGCCCCCCGCCCCCCAGGAGTGTGACCGCGACTGCCGTTGTCGGGACCCTCTGGTGCCTATCAAGAAAGACGCTCACCCCTTATACAACCGGGTCCACACTGGCCCTGTGGATAACTGTGCCCAGCCCTGCCACCACCCTTACTTCTCCCAGGACGAACGCACCTTCACCACCTTCTGGATCGGCCTGTGGTCCATCCTGTGCTTCGTCTCCACCCTGACCACTGTTGCCACCTTCCTCATCGACATGGAGCGCTTTCAGTACCCTGAGAGACCCATCATCTTCCTGGCTGCCTGCTACCTTTTTGTCTCCCTGGGCTACATTATACGACTAGTGGCAGGTCACGAGAGGGTGGCGTGCGCTGGGAGCGGAGACCAGCAGCACATCCTGTATGACACCACTGGCCCACCTCTGTGTACCCTGGTCTTCCTGCTCATCTACTTCTTCAGCATGGCCAGCTCCATCTGGTGGGTGGTGCTCTCCCTCACCTGGTTCCTGGCCGCGGGCATGAAGTGGGGCAACGAGGCGATTGCTGGTTACTCCCAGTACTTCCACCTGGCTGCCTGGCTGATCCCCAGCGTCAAGTCCATCGTGGTCCTCGCTCTGAGCTCTGTGGACGGAGACCCAGTGGTGGGGATCTGCTACGTGGGGAACCAGAGTCTGGAGAGTCTGCGGGGGTTTGTGTTAGCTCCCCTGGTGGTCTACCTCTTCACCGGCTCCCTGTTCCTCCTAGCGGGCTTTGTGTCTCTGTTCCGCATCCGCAGCATCATCAAACAGGGAGGGACCAAGACCGACAAACTGGAGAAGCTGATGATCAGGATTGGATTGTTCACGGTGCTTTACACAGTTCCTGCTACTATAGTAGTAGCCTGCCTGGTGTACGAGCAGCACTACAGGCCTGGGTGGGACCGGGCTCTATCCTGCTCGTGTCAGGCTGAGAGACAGAGGCTGGGCCTGGGGCCCGACTACGCCGTCTTCATGTTGAAATACTTCATGTGTCTGGTGGTGGGGATTACGTCTGGCGTGTGGATCTGGTCCGGAAAGACCCTGGAGTCATGGAGGAGGTTCACCGCTCGCTGCTGCCTCTGCTGGGCCTCCAAGCCCACCGCACCCCCCTCATTGTACAGCGAGGCCAGTACGGCCCTCACAGGACACCCCAGTGCGGCCCTGCCACCAGGGTCCTACCACAAACCTGCCCTGCCCTCACATGTGTGAACGGGACCCTAGAGGGTAGAGAGGCCACGAATGCACGTGTCCAGTGATAGCCCCCCTGTCATATGTGTGACTGGGAACGTGCCTCACCTGGAAATTGGACAAGATGGTGACTGTGATAAAAACACCATATACAGCTCTCTGGAAGGAAAAGGGACAGAGGACAAGGAGATAACCAAGTAATTCCACAGGTTCTAAATAGAACATTTATCGACCAACCAGCCTCACTAGCTCTTCTTGGAACATGAAGAACAGACACAAATGTGTTTTAACAGGAAAGAAATGGGACGTTTGTATCATATGAACTCTGTGGTACTTCCGATGCGCCGTGCTGCTTTGGTAAAGTACCACTACTTCAAAAGAGCCACTAGAACATTCTCTGAGAGGGGGAAAATGGAGATGTGTTTTTATGTGTATAAACCAGTACTCCTGTCAATCTATCTGGACCATTAGAGATGACTCATTATTTATTCCTGTATTCATTACCAGTCatacatttggacacacctactcattcatgggtttaaaaaaaaaatatgactattttctacattataaaataatagtgatgacatcaaaactatgaaataacacatat

Function

NR:

description
PREDICTED: frizzled-5-like

GO: NA

KEGG:

id description
K02375 FZD5_8, fz2; frizzled 5/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597393.2 True 3342 mRNA 0.51 1 55047518 55050859
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110520215 LOC106586297 coding downstream 387837 54646623 ~ 54659681 (-)
LOC110520214 LOC106586297 coding downstream 401176 54639230 ~ 54646342 (-)
LOC110520218 NA coding downstream 411040 54633738 ~ 54636478 (-)
LOC110520216 LOC106586300 coding downstream 422974 54617528 ~ 54624544 (-)
LOC110520213 ube2f coding downstream 453438 54504064 ~ 54594080 (-)
LOC110520227 plekhm3 coding upstream 20934 55068639 ~ 55122013 (-)
idh1 LOC106586335 coding upstream 80535 55131394 ~ 55146388 (-)
armc8 armc8 coding upstream 306508 55357367 ~ 55371667 (-)
LOC110520232 LOC106586350 coding upstream 325056 55375915 ~ 55382161 (-)
crygs2 LOC106586348 coding upstream 338242 55389101 ~ 55391332 (-)
G275020 NA non-coding downstream 44961 55000183 ~ 55002557 (-)
G274996 NA non-coding downstream 113718 54929696 ~ 54933800 (-)
G274971 NA non-coding downstream 151185 54895770 ~ 54896333 (-)
G274970 NA non-coding downstream 151967 54895258 ~ 54895551 (-)
G274962 NA non-coding downstream 160350 54886901 ~ 54887168 (-)
G275151 NA non-coding upstream 188860 55239719 ~ 55244575 (-)
G275196 NA non-coding upstream 262152 55313011 ~ 55313235 (-)
G275200 NA non-coding upstream 271544 55322403 ~ 55322661 (-)
G275201 NA non-coding upstream 272552 55323411 ~ 55323622 (-)
G274344 LOC106586294 other downstream 364713 54679918 ~ 54682805 (-)
G272713 LOC106586324 other downstream 1796434 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 2338702 52693956 ~ 52708816 (-)
il1rl1 il1rl1 other downstream 3447288 51596933 ~ 51619476 (-)
fgf9 NA other downstream 3573379 51471899 ~ 51478510 (-)
G275250 NA other upstream 359284 55410143 ~ 55411487 (-)
si:dkey-91i10.3 LOC106586420 other upstream 2219923 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 2352125 57402984 ~ 57403575 (-)
G277749 LOC106586429 other upstream 2533527 57584386 ~ 57589183 (-)

Expression

LOC110520226(LOC106582378) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 10.
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LOC110520226(LOC106582378) Expression in each Bioproject

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LOC110520226(LOC106582378) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network