idh1 (LOC106586335)


Basic Information

Item Value
gene id idh1
gene name LOC106586335
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55131394 ~ 55146388 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597395.2
ggagaacACCGATTTCTGGCCCAGTTATCCTTCTCGTTTAGCCCTTTGCTCTTTGGTGATAGCCTAGCAACTACATCTTTTGAAATAGGTTTATTTGAAAGCGCATGAATGTCATATGACTCTTTTTTGTTGTCAAAATCTACCGCAGATTATCTAATCTATGAATTTCTAAACAACTTGGTTATGAACAGGTTCTTATGTTGCAATGAGTAGCACAGCACAAACCGACCCTCTATGAACAAACACCTACCCGACACCCGCCCATAAACACGCTCCCACTGCTGTGTGGGTTACTGTATTGGCTGTTTTAGATTATACATCTCCGTTGATTGGTACAGGGAGTGTCTTTCGAGCGGGCGAGTGCACGGTTGCCGACGAGGTTGACGCCTCTGTTGATACTTTTGGAAGTCGGTGTAGAACAAGACGTTCTACTGCTTCATCGAATATTACTTGTTCAGGCAGGAAACAAAGTTCCAGGATGTCTCAGAAGATTAAGGCAGGGTCGGTGGTGGAGATGCAGGGGGATGAGATGACCAGAGTCATCTGGGAGCTCATTAAGGAGAAGCTCATCTTCCCCTACCTGGAGATGGACCTGCACAGCTACGACCTAGGCATGGAGAACCGAGACGCCACGGACGACAAGGTTACCGTTGAGGCGGCGGAAGCGACGCGACGATACAACGTGGGCATTAAGTGTGCCACCATCACGCCGGATGAGAACCGGGTGGAGGAGTTCAAGTTGAAGCAAATGTGGCGTTCGCCCAATGGAACCATCCGTAACATCCTGGGAGGCACCGTGTTCAGGGAGGCCATCATCTGTAAGAACATCCCTCGCCTTGTGCCCGGCTGGGTCAAACCCATCATCATCGGCAGGCATGCCCACGGAGACCAGTACAAGGCCACAGACTTTGTAGTACCAGGGCCTGGGAGATTGGAGATGAAATTCACACCCAAGTCTGGGGAGCCAATGAACTTTGTTGTCCACGACTTTGAAGgttCAGGTGGTGTGGCTCTGGGGATGTACAACACCGACAGCTCCATCAGGGACTTTGCCCACAGCTCCTTCCAGATGGGCCTGGTTAAAGGCTGGCCTCTGTACCTCAGCACCAAGAACACCATCCTCAAGAAGTATGATGGACGCTTCAAAGATATCTTCCAGGAGATCTACGAGAAGGAGTACCGCTCTAAGTTTGAGCAGAAGGGGATCTGGTATGAGCATCGTCTGATTGATGACATGGTGGCTCAGGCCATGAAGTCTGATGGAGGATTCATCTGGGCCTGCAAGAACTACGACGGAGACGTTCAGTCTGACTCTGTAGCACAAGGCTACGGGTCCCTGGGTATGATGACCAGCGTGCTCATCTGTCCTGACGGTCGTACAGTAGAGTCAGAGGCTGCCCACGGTACAGTGACACGCCACTACAGACAGCACCAACAGGGCAAGGAGACCTCCACCAACCCCATTGCGTCCATCTTTGCGTGGTCGCGGGGGCTGCTGCACCGGGCGAAGCTGGATGACAACGCAAAGCTGCGTGTGTTTGCTGAGGCCCTGGAGGTTGTCTGCATTGAGACCATCGAGGCTGGCTTCATGACCAAGGATCTGGCTATCTGTGTCAAAGGAATGGCAAATACCAAACGCTCAGACTACCTGAACACCTTTGAATTCTTGGATAAGCTGGCGGATAACTTGAAGATCAAGATGTCCAACCAACCCAAACTGTGATCTCCTTAGCtctcaattacacacacacacactgttgacaCCCAGGACTATGGGTCCCAAGCCAACACTAAACCACTGACGGAGGGACTGTTTGACACAGTACTGAATCAATCGTTCCCATCTCCAGGAGTCTGTCTGCTAATGGAGGTTCCTTGTCCAGGAGGAGGGGATGTAGGCTGAGCTGAGGCCCCTCCATCGATCATTCACCACTATAGCAAAGCCATATCTTCTGGTAACACTCATCCAGTCTAAGTGTCCTGAATCTTAACTTGAGATCCATGAGCATAACTCATGTTTATCATGATTTAAGAGTTAAATGTGATTATCCAAGTTAGGATTCTGCCAAGTATGATCTTATGACTGTCAATACATCACATACAGATGGTTCCAGAAATCAGACTGGACACAGTCAGTAATATATTTTGCGATAATtgcactttttattttattttttatgacgTGTGTGTTTTTAAGTGTTGTCAGTCAGTGATCAGTAATAGTGGATTGTCCTGCCTGAGTTTGTTTGAGGGTCGTCTTACCCTTGTTGCCTTATTTGTTTTATGTCAAGTAATTGATCCGTGTCACACATAATATATTCCATGTCGACTACTGTGGTAGACGAAAGCCTGCTTGATTTTTGACTGTTCACGTGGTCTTTGATTCACACAAAGGTGTTCTCATCACTTACTCCTTATGGATGGTTGTGTAAGGGGTTGTTGTGGGCCTGCGTGTTATCTTTGTGTGTATAATCCATAGCTTAACACTTTACTCCTCAAATACAGAAACCAGTGTCAATGTACGTCTGCCAGTATCGGGTTGTTGGTTGGTACTCGACGGTGTGTGTGGTTAGAATATTAACtcaataaatattttattttattgtg
>XM_036974621.1
tgccttcaatgctacgggcggcaacaatgtcatacttgtTTGGACCAGAAAGCATCAGATATATGGCctacatgtagagagacagaggggcgttgttttgctcgctcggatgctttctcctTTCCAGGATGTCTCAGAAGATTAAGGCAGGGTCGGTGGTGGAGATGCAGGGGGATGAGATGACCAGAGTCATCTGGGAGCTCATTAAGGAGAAGCTCATCTTCCCCTACCTGGAGATGGACCTGCACAGCTACGACCTAGGCATGGAGAACCGAGACGCCACGGACGACAAGGTTACCGTTGAGGCGGCGGAAGCGACGCGACGATACAACGTGGGCATTAAGTGTGCCACCATCACGCCGGATGAGAACCGGGTGGAGGAGTTCAAGTTGAAGCAAATGTGGCGTTCGCCCAATGGAACCATCCGTAACATCCTGGGAGGCACCGTGTTCAGGGAGGCCATCATCTGTAAGAACATCCCTCGCCTTGTGCCCGGCTGGGTCAAACCCATCATCATCGGCAGGCATGCCCACGGAGACCAGTACAAGGCCACAGACTTTGTAGTACCAGGGCCTGGGAGATTGGAGATGAAATTCACACCCAAGTCTGGGGAGCCAATGAACTTTGTTGTCCACGACTTTGAAGgttCAGGTGGTGTGGCTCTGGGGATGTACAACACCGACAGCTCCATCAGGGACTTTGCCCACAGCTCCTTCCAGATGGGCCTGGTTAAAGGCTGGCCTCTGTACCTCAGCACCAAGAACACCATCCTCAAGAAGTATGATGGACGCTTCAAAGATATCTTCCAGGAGATCTACGAGAAGGAGTACCGCTCTAAGTTTGAGCAGAAGGGGATCTGGTATGAGCATCGTCTGATTGATGACATGGTGGCTCAGGCCATGAAGTCTGATGGAGGATTCATCTGGGCCTGCAAGAACTACGACGGAGACGTTCAGTCTGACTCTGTAGCACAAGGCTACGGGTCCCTGGGTATGATGACCAGCGTGCTCATCTGTCCTGACGGTCGTACAGTAGAGTCAGAGGCTGCCCACGGTACAGTGACACGCCACTACAGACAGCACCAACAGGGCAAGGAGACCTCCACCAACCCCATTGCGTCCATCTTTGCGTGGTCGCGGGGGCTGCTGCACCGGGCGAAGCTGGATGACAACGCAAAGCTGCGTGTGTTTGCTGAGGCCCTGGAGGTTGTCTGCATTGAGACCATCGAGGCTGGCTTCATGACCAAGGATCTGGCTATCTGTGTCAAAGGAATGGCAAATACCAAACGCTCAGACTACCTGAACACCTTTGAATTCTTGGATAAGCTGGCGGATAACTTGAAGATCAAGATGTCCAACCAACCCAAACTGTGATCTCCTTAGCtctcaattacacacacacacactgttgacaCCCAGGACTATGGGTCCCAAGCCAACACTAAACCACTGACGGAGGGACTGTTTGACACAGTACTGAATCAATCGTTCCCATCTCCAGGAGTCTGTCTGCTAATGGAGGTTCCTTGTCCAGGAGGAGGGGATGTAGGCTGAGCTGAGGCCCCTCCATCGATCATTCACCACTATAGCAAAGCCATATCTTCTGGTAACACTCATCCAGTCTAAGTGTCCTGAATCTTAACTTGAGATCCATGAGCATAACTCATGTTTATCATGATTTAAGAGTTAAATGTG
>XM_036974622.1
AAAGTTTTCAGAAGAAGCAATTTCCAGGATGTCTCAGAAGATTAAGGCAGGGTCGGTGGTGGAGATGCAGGGGGATGAGATGACCAGAGTCATCTGGGAGCTCATTAAGGAGAAGCTCATCTTCCCCTACCTGGAGATGGACCTGCACAGCTACGACCTAGGCATGGAGAACCGAGACGCCACGGACGACAAGGTTACCGTTGAGGCGGCGGAAGCGACGCGACGATACAACGTGGGCATTAAGTGTGCCACCATCACGCCGGATGAGAACCGGGTGGAGGAGTTCAAGTTGAAGCAAATGTGGCGTTCGCCCAATGGAACCATCCGTAACATCCTGGGAGGCACCGTGTTCAGGGAGGCCATCATCTGTAAGAACATCCCTCGCCTTGTGCCCGGCTGGGTCAAACCCATCATCATCGGCAGGCATGCCCACGGAGACCAGTACAAGGCCACAGACTTTGTAGTACCAGGGCCTGGGAGATTGGAGATGAAATTCACACCCAAGTCTGGGGAGCCAATGAACTTTGTTGTCCACGACTTTGAAGgttCAGGTGGTGTGGCTCTGGGGATGTACAACACCGACAGCTCCATCAGGGACTTTGCCCACAGCTCCTTCCAGATGGGCCTGGTTAAAGGCTGGCCTCTGTACCTCAGCACCAAGAACACCATCCTCAAGAAGTATGATGGACGCTTCAAAGATATCTTCCAGGAGATCTACGAGAAGGAGTACCGCTCTAAGTTTGAGCAGAAGGGGATCTGGTATGAGCATCGTCTGATTGATGACATGGTGGCTCAGGCCATGAAGTCTGATGGAGGATTCATCTGGGCCTGCAAGAACTACGACGGAGACGTTCAGTCTGACTCTGTAGCACAAGGCTACGGGTCCCTGGGTATGATGACCAGCGTGCTCATCTGTCCTGACGGTCGTACAGTAGAGTCAGAGGCTGCCCACGGTACAGTGACACGCCACTACAGACAGCACCAACAGGGCAAGGAGACCTCCACCAACCCCATTGCGTCCATCTTTGCGTGGTCGCGGGGGCTGCTGCACCGGGCGAAGCTGGATGACAACGCAAAGCTGCGTGTGTTTGCTGAGGCCCTGGAGGTTGTCTGCATTGAGACCATCGAGGCTGGCTTCATGACCAAGGATCTGGCTATCTGTGTCAAAGGAATGGCAAATACCAAACGCTCAGACTACCTGAACACCTTTGAATTCTTGGATAAGCTGGCGGATAACTTGAAGATCAAGATGTCCAACCAACCCAAACTGTGATCTCCTTAGCtctcaattacacacacacacactgttgacaCCCAGGACTATGGGTCCCAAGCCAACACTAAACCACTGACGGAGGGACTGTTTGACACAGTACTGAATCAATCGTTCCCATCTCCAGGAGTCTGTCTGCTAATGGAGGTTCCTTGTCCAGGAGGAGGGGATGTAGGCTGAGCTGAGGCCCCTCCATCGATCATTCACCACTATAGCAAAGCCATATCTTCTGGTAACACTCATCCAGTCTAAGTGTCCTGAATCTTAACTTGAGATCCATGAGCATAACTCATGTTTATCATGATTTAAGAGTTAAATGTG
>XM_036974623.1
ctggagaacACCGATTTCTGGCCCAGTTATCCTTCTCGTTTAGCCCTTTGCTCTTTGGTGATAGCCTAGCAACTACATCTTTTGAAATAGGTTTATTTGAAAGCGCATGAATGTCATATGACTCTTTTTTGTTGTCAAAATCTACCGCAGATTATCTAATCTATGAATTTCTAAACAACTTGGTTATGAACAGGTTCTTATGTTGCAATGAGTAGCACAGCACAAACCGACCCTCTATGAACAAACACCTACCCGACACCCGCCCATAAACACGCTCCCACTGCTGTGTGGGTTACTGTATTGGCTGTTTTAGATTATACATCTCCGTTGATTGGTACAGGGAGTGTCTTTCGAGCGGGCGAGTGCACGGTTGCCGACGAGGTTGACGCCTCTGTTGATACTTTTGGAAGTCGGTGTAGAACAAGACGTTCTACTGCTTCATCGAATATTACTTGTTCAGGCAGGAAACAAAGTTCCAGGATGTCTCAGAAGATTAAGGCAGGGTCGGTGGTGGAGATGCAGGGGGATGAGATGACCAGAGTCATCTGGGAGCTCATTAAGGAGAAGCTCATCTTCCCCTACCTGGAGATGGACCTGCACAGCTACGACCTAGGCATGGAGAACCGAGACGCCACGGACGACAAGGTTACCGTTGAGGCGGCGGAAGCGACGCGACGATACAACGTGGGCATTAAGTGTGCCACCATCACGCCGGATGAGAACCGGGTGGAGGAGTTCAAGTTGAAGCAAATGTGGCGTTCGCCCAATGGAACCATCCGTAACATCCTGGGAGGCACCGTGTTCAGGGAGGCCATCATCTGTAAGAACATCCCTCGCCTTGTGCCCGGCTGGGTCAAACCCATCATCATCGGCAGGCATGCCCACGGAGACCAGTACAAGGCCACAGACTTTGTAGTACCAGGGCCTGGGAGATTGGAGATGAAATTCACACCCAAGTCTGGGGAGCCAATGAACTTTGTTGTCCACGACTTTGAAGgttCAGGTGGTGTGGCTCTGGGGATGTACAACACCGACAGCTCCATCAGGGACTTTGCCCACAGCTCCTTCCAGATGGGCCTGGTTAAAGGCTGGCCTCTGTACCTCAGCACCAAGAACACCATCCTCAAGAAGTATGATGGACGCTTCAAAGATATCTTCCAGGAGATCTACGAGAAGGAGTACCGCTCTAAGTTTGAGCAGAAGGGGATCTGGTATGAGCATCGTCTGATTGATGACATGGTGGCTCAGGCCATGAAGTCTGATGGAGGATTCATCTGGGCCTGCAAGAACTACGACGGAGACGTTCAGTCTGACTCTGTAGCACAAGGCTACGGGTCCCTGGGTATGATGACCAGCGTGCTCATCTGTCCTGACGGTCGTACAGTAGAGTCAGAGGCTGCCCACGGTACAGTGACACGCCACTACAGACAGCACCAACAGGGCAAGGAGACCTCCACCAACCCCATTGTTTTTAGATCTGAATGTACCAGCCAAGAGAAATAAAGGCAATACAAGGACCTAGGAAAAGATGTCCCTTATGTGTTATGGTCGCGTGTGCGCAGCGTCCATCTTTGCGTGGTCGCGGGGGCTGCTG

Function

NR:

description
isocitrate dehydrogenase [NADP] cytoplasmic-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597395.2 False 2607 mRNA 0.48 9 55131394 55146386
XM_036974621.1 False 1694 mRNA 0.52 9 55131957 55144962
XM_036974622.1 False 1594 mRNA 0.52 9 55131957 55145408
XM_036974623.1 True 1594 mRNA 0.51 8 55132602 55146388

Neighbor

gene id symbol gene type direction distance location
LOC110520227 plekhm3 coding downstream 9381 55068639 ~ 55122013 (-)
LOC110520226 LOC106582378 coding downstream 80535 55047518 ~ 55050859 (-)
LOC110520215 LOC106586297 coding downstream 471713 54646623 ~ 54659681 (-)
LOC110520214 LOC106586297 coding downstream 485052 54639230 ~ 54646342 (-)
LOC110520218 NA coding downstream 494916 54633738 ~ 54636478 (-)
armc8 armc8 coding upstream 210979 55357367 ~ 55371667 (-)
LOC110520232 LOC106586350 coding upstream 229527 55375915 ~ 55382161 (-)
crygs2 LOC106586348 coding upstream 242713 55389101 ~ 55391332 (-)
LOC110520233 NA coding upstream 245801 55392189 ~ 55395003 (-)
LOC110504309 plcl1 coding upstream 445976 55592364 ~ 55715785 (-)
G275045 NA non-coding downstream 21743 55034597 ~ 55109651 (-)
G275020 NA non-coding downstream 128837 55000183 ~ 55002557 (-)
G274996 NA non-coding downstream 197594 54929696 ~ 54933800 (-)
G274971 NA non-coding downstream 235061 54895770 ~ 54896333 (-)
G275151 NA non-coding upstream 93331 55239719 ~ 55244575 (-)
G275196 NA non-coding upstream 166623 55313011 ~ 55313235 (-)
G275200 NA non-coding upstream 176015 55322403 ~ 55322661 (-)
G275201 NA non-coding upstream 177023 55323411 ~ 55323622 (-)
G275205 NA non-coding upstream 182354 55328742 ~ 55328941 (-)
G274344 LOC106586294 other downstream 448589 54679918 ~ 54682805 (-)
G272713 LOC106586324 other downstream 1880310 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 2422578 52693956 ~ 52708816 (-)
il1rl1 il1rl1 other downstream 3531164 51596933 ~ 51619476 (-)
G275250 NA other upstream 263755 55410143 ~ 55411487 (-)
si:dkey-91i10.3 LOC106586420 other upstream 2124394 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 2256596 57402984 ~ 57403575 (-)
G277749 LOC106586429 other upstream 2437998 57584386 ~ 57589183 (-)
G284018 NA other upstream 7568187 62714575 ~ 62715177 (-)

Expression


Co-expression Network