Gene
RNA
| Item | Value |
|---|---|
| gene id | idh1 |
| gene name | LOC106586335 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 55131394 ~ 55146388 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| isocitrate dehydrogenase [NADP] cytoplasmic-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021597395.2 | False | 2607 | mRNA | 0.48 | 9 | 55131394 | 55146386 |
| XM_036974621.1 | False | 1694 | mRNA | 0.52 | 9 | 55131957 | 55144962 |
| XM_036974622.1 | False | 1594 | mRNA | 0.52 | 9 | 55131957 | 55145408 |
| XM_036974623.1 | True | 1594 | mRNA | 0.51 | 8 | 55132602 | 55146388 |
55,118,000
55,120,000
55,122,000
55,124,000
55,126,000
55,128,000
55,130,000
55,132,000
55,134,000
55,134,000
55,136,000
55,138,000
55,140,000
55,142,000
55,144,000
55,146,000
55,148,000
55,150,000
NC_048567.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110520227 | plekhm3 | coding | downstream | 9381 | 55068639 ~ 55122013 (-) |
| LOC110520226 | LOC106582378 | coding | downstream | 80535 | 55047518 ~ 55050859 (-) |
| LOC110520215 | LOC106586297 | coding | downstream | 471713 | 54646623 ~ 54659681 (-) |
| LOC110520214 | LOC106586297 | coding | downstream | 485052 | 54639230 ~ 54646342 (-) |
| LOC110520218 | NA | coding | downstream | 494916 | 54633738 ~ 54636478 (-) |
| armc8 | armc8 | coding | upstream | 210979 | 55357367 ~ 55371667 (-) |
| LOC110520232 | LOC106586350 | coding | upstream | 229527 | 55375915 ~ 55382161 (-) |
| crygs2 | LOC106586348 | coding | upstream | 242713 | 55389101 ~ 55391332 (-) |
| LOC110520233 | NA | coding | upstream | 245801 | 55392189 ~ 55395003 (-) |
| LOC110504309 | plcl1 | coding | upstream | 445976 | 55592364 ~ 55715785 (-) |
| G275045 | NA | non-coding | downstream | 21743 | 55034597 ~ 55109651 (-) |
| G275020 | NA | non-coding | downstream | 128837 | 55000183 ~ 55002557 (-) |
| G274996 | NA | non-coding | downstream | 197594 | 54929696 ~ 54933800 (-) |
| G274971 | NA | non-coding | downstream | 235061 | 54895770 ~ 54896333 (-) |
| G275151 | NA | non-coding | upstream | 93331 | 55239719 ~ 55244575 (-) |
| G275196 | NA | non-coding | upstream | 166623 | 55313011 ~ 55313235 (-) |
| G275200 | NA | non-coding | upstream | 176015 | 55322403 ~ 55322661 (-) |
| G275201 | NA | non-coding | upstream | 177023 | 55323411 ~ 55323622 (-) |
| G275205 | NA | non-coding | upstream | 182354 | 55328742 ~ 55328941 (-) |
| G274344 | LOC106586294 | other | downstream | 448589 | 54679918 ~ 54682805 (-) |
| G272713 | LOC106586324 | other | downstream | 1880310 | 53249926 ~ 53251084 (-) |
| LOC110520182 | NA | other | downstream | 2422578 | 52693956 ~ 52708816 (-) |
| il1rl1 | il1rl1 | other | downstream | 3531164 | 51596933 ~ 51619476 (-) |
| G275250 | NA | other | upstream | 263755 | 55410143 ~ 55411487 (-) |
| si:dkey-91i10.3 | LOC106586420 | other | upstream | 2124394 | 57270782 ~ 57297762 (-) |
| G277673 | LOC106586423 | other | upstream | 2256596 | 57402984 ~ 57403575 (-) |
| G277749 | LOC106586429 | other | upstream | 2437998 | 57584386 ~ 57589183 (-) |
| G284018 | NA | other | upstream | 7568187 | 62714575 ~ 62715177 (-) |
