Gene
RNA
| Item | Value |
|---|---|
| gene id | armc8 |
| gene name | armc8 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 55357367 ~ 55371667 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| armc8 | Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of GID complex and ubiquitin ligase complex. Orthologous to human ARMC8 (armadillo repeat containing 8). |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036974625.1 | False | 4661 | mRNA | 0.48 | 23 | 55357367 | 55371667 |
| XM_036974626.1 | False | 4640 | mRNA | 0.48 | 23 | 55357367 | 55371667 |
| XM_036974627.1 | False | 4571 | mRNA | 0.48 | 22 | 55357367 | 55371667 |
| XM_036974628.1 | False | 4550 | mRNA | 0.48 | 22 | 55357367 | 55371667 |
| TU312426 | True | 2726 | lncRNA | 0.43 | 2 | 55367204 | 55371648 |
55,340,000
55,342,000
55,344,000
55,346,000
55,348,000
55,350,000
55,352,000
55,354,000
55,356,000
55,358,000
55,360,000
55,362,000
55,364,000
55,366,000
55,368,000
55,370,000
55,372,000
NC_048567.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| idh1 | LOC106586335 | coding | downstream | 210979 | 55131394 ~ 55146388 (-) |
| LOC110520227 | plekhm3 | coding | downstream | 235354 | 55068639 ~ 55122013 (-) |
| LOC110520226 | LOC106582378 | coding | downstream | 306508 | 55047518 ~ 55050859 (-) |
| LOC110520215 | LOC106586297 | coding | downstream | 697686 | 54646623 ~ 54659681 (-) |
| LOC110520214 | LOC106586297 | coding | downstream | 711025 | 54639230 ~ 54646342 (-) |
| LOC110520232 | LOC106586350 | coding | upstream | 4248 | 55375915 ~ 55382161 (-) |
| crygs2 | LOC106586348 | coding | upstream | 17434 | 55389101 ~ 55391332 (-) |
| LOC110520233 | NA | coding | upstream | 20522 | 55392189 ~ 55395003 (-) |
| LOC110504309 | plcl1 | coding | upstream | 220697 | 55592364 ~ 55715785 (-) |
| LOC110520238 | LOC106586370 | coding | upstream | 407836 | 55779503 ~ 55821242 (-) |
| G275183 | NA | non-coding | downstream | 936 | 55355925 ~ 55356431 (-) |
| G275182 | NA | non-coding | downstream | 1776 | 55354015 ~ 55355591 (-) |
| G275224 | LOC106586341 | non-coding | downstream | 5960 | 55350984 ~ 55351407 (-) |
| G275220 | LOC103156743 | non-coding | downstream | 12587 | 55344531 ~ 55344780 (-) |
| G275219 | NA | non-coding | downstream | 15778 | 55341103 ~ 55341589 (-) |
| G275229 | NA | non-coding | upstream | 3433 | 55375100 ~ 55375519 (-) |
| G275234 | NA | non-coding | upstream | 15307 | 55386974 ~ 55387224 (-) |
| G275243 | NA | non-coding | upstream | 26223 | 55397890 ~ 55398246 (-) |
| G275244 | NA | non-coding | upstream | 28136 | 55399803 ~ 55400473 (-) |
| G274344 | LOC106586294 | other | downstream | 674562 | 54679918 ~ 54682805 (-) |
| G272713 | LOC106586324 | other | downstream | 2106283 | 53249926 ~ 53251084 (-) |
| LOC110520182 | NA | other | downstream | 2648551 | 52693956 ~ 52708816 (-) |
| il1rl1 | il1rl1 | other | downstream | 3757137 | 51596933 ~ 51619476 (-) |
| G275250 | NA | other | upstream | 38476 | 55410143 ~ 55411487 (-) |
| si:dkey-91i10.3 | LOC106586420 | other | upstream | 1899115 | 57270782 ~ 57297762 (-) |
| G277673 | LOC106586423 | other | upstream | 2031317 | 57402984 ~ 57403575 (-) |
| G277749 | LOC106586429 | other | upstream | 2212719 | 57584386 ~ 57589183 (-) |
| G284018 | NA | other | upstream | 7342908 | 62714575 ~ 62715177 (-) |
