LOC110520231 (dbr1)


Basic Information

Item Value
gene id LOC110520231
gene name dbr1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55371759 ~ 55375526 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110520231
GATTCGACAAACATATGATTATTATAAGCATTTATGTTCATATataaatatgttttattcatAAAGAAGTGGTGGTAGTCCGAATTACAACGTTTCGGGATAATGTAcggatgtttttttttgtaaattattttgattGTGGAAAGTGCAACCTATGACGCCATCGCTCGATTTACTTTGGTGGATGTGGTGTGCGCATGCGCTCTGGGCAAACTAGGCtgaggtgggatttttttttcGATTCATACGTTTTGGTTGAGATGAGCGGAACAAACCAACATAATCATAATCACGCTACGTCGTAAATGAAAATAGCAAAAGGTATTACTCTGGAGAGTAGACAGCTCTGATCCTGACCATCTTCATTGTGGGGAATCATGAGGCCTCCAACCACTTCCAGGACTGGTTATGCTGGCGTTGTGCGCTACAAAGTAGTAAGGATAGGTGGCTTGTCTGGAATCTTCAAAGGGCATGCGTACAGGAAAGGGCATTACGAGTTCCCTCCATATCCCAGAAACTCTACGCAGTGTTTACCACATCAGGAACATTGATGTCTTCAAACTCAAACAGATCCAGATGCCTGTGGATGTCTTCCTGACCCATGACTGGCCTCATGGGATCTACCATTATGGAAGCACGGGGCAGCTACTGAGTAAGAAGAAATTCCTGAGGCAGGAGGTAGAGTCCAACACACTGGGTAGTCCTGTGGCTGCAGTGCTCCTGGCCCATCTGCAGCCTAATTACTGGTTCTCTGCACACCTCCACGGCAAGTTTGCTGCCCTTATGCAGCACCCGGCCAATGGTGATGCTGCTCTCCGCACTACCAAATTCCTCTCACTGGATAAGTGCCTCCCCTACATGGACTTTCTACAGATTGTAGAGGTAGCAGACAGGCCAAGCTCATCCCAGGTTCTGGAATATGATCCAGAGTAGCTGGTCATCCGAAGGCTTAAAGACAGCCTGCTGGCTGTTAGCCCTAACTACTGGAACCCTCCACAGAACAACGGCCTGCACATAAGGTGGGACATCAGTGCTTCTGAGGCAGCCATGATGGAGGCTGTGGGTGAACTGGGAGGTGAACTGTCCATCCCAGACAACTTCAGCCTGACTGTGCCAGCCTACGATCCTGCCTGGCCCCCATCCCAGCTACAGCACCAACCCCCACACCACCCAGCTCTGTGCCACCCAGGGCCTCACAGACATCTATGCCCAGGTCGGGGGACAGATGGGCACAGGAGCCCCAGAGCTGGAGGATGATGATGTCCAGAGTGGGGATGAACCCTATTGACACCTCAGGCCTGTCCAGCTCATACAACCCTGATGAGATTACcatagaggaagaagagggggagaaggagggaggagagaaaaggggtaAGGGGGAGGGCCTTGATGCAGTGGTGCCTGAGGGTGAGACGGGGGAAGCAGGAGAGAGACGGGACTCAGGGAGCCTCTGGAGAGCTACCCCCCCAGTCGCATGGTCCTGTCCATGCTTGAGCCCAAATCAAACCCCGCTACTCCCTCTGGCCTGTCCCTCAACCTGCCTACCCCCTCTCACTCCTCACCCCtggaaggggaaggggagggggaggagcccCATGTCCGGATCCCCAAGCGCACCATTGGGAAGAAGGGGGACCACAGCAGTACGGGTAGCAACTCCAGGATCAAACGCAGGAACCAGGTCATCTACACAGCAGTCGACGACAAGGAGAGTGAGGACTAG
>TU312072
ATGACTGGCCTCATGGGATCTACCATTATGGAAGCACGGGGCAGCTACTGAGTAAGAAGAAATTCCTGAGGCAGGAGGTAGAGTCCAACACACTGGGTAGTCCTGTGGCTGCAGTGCTCCTGGCCCATCTGCAGCCTAATTACTGGTTCTCTGCACACCTCCACGGCAAGTTTGCTGCCCTTATGCAGCACCCGGCCAATGGTGATGCTGCTCTCCGCACTACCAAATTCCTCTCACTGGATAAGTGCCTCCCCTACATGGACTTTCTACAGATTGTAGAGGTAGCAGACAGGCCAAGCTCATCCCAGGTTCTGGAATATGATCCAGAGTAGCTGGTCATCCGAAGGCTTAAAGACAGCCTGCTGGCTGTTAGCCCTAACTACTGGAACCCTCCACAGAACAACGGCCTGCACATAAGGTGGGACATCAGTGCTTCTGAGGCAGCCATGATGGAGGCTGTGGGTGAACTGGGAGGTGAACTGTCCATCCCAGACAACTTCAGCCTGACTGTGCCAGCCTACGATCCTGCCTGGCCCCCATCCCAGCTACAGCACCAACCCCCACACCACCCA
>TU312073
AGACGGGGGAAGCAGGAGAGAGACGGGACTCAGGGAGCCTCTGGAGAGCTACCCCCCCAGTCGCATGGTCCTGTCCATGCTTGAGCCCAAATCAAACCCCGCTACTCCCTCTGGCCTGTCCCTCAACCTGCCTACCCCCTCTCACTCCTCACCCCtggaaggggaaggggagggggaggagcccCATGTCCGGATCCCCAAGCGCACCATTGGGAAGAAGGGGGACCACAGCAGTACGGGTAGCAACTCCAGGATCAAACGCAGGAACCAGGTCATCTACACAGCAGTCGACGACAAGGAGAGTGAGGACTAGGGCTGGAACTTGACCCAAGTTTTGGTGGGAACTGTTGTGAAATATACAAGATTCTCATGATGTTTTTATATTGATATTGTCTGTCAATTGTCCTTCTTGATTGCAAACCAACAGAGAGCTGTTTTAttaggaaagggagaggggagaatcc
>TU312074
AGACGGGGGAAGCAGGAGAGAGACGGGACTCAGGGAGCCTCTGGAGAGCTACCCCCCCAGTCGCATGGTCCTGTCCATGCTTGAGCCCAAATCAAACCCCGCTACTCCCTCTGGCCTGTCCCTCAACCTGCCTACCCCCTCTCACTCCTCACCCCtggaaggggaaggggagggggaggagcccCATGTCCGGATCCCCAAGCGCACCATTGGGAAGAAGGGGGACCACAGCAGTACGGGTAGCAACTCCAGGATCAAACGCAGGAACCAGGTCATCTACACAGCAGTCGACGACAAGGAGAGTGAGGACTAGGGCTGGAACTTGACCCAAGTTTTGGTGGGAACTGTTGTGAAATATACAAGATTCTCATGATGTTTTTATATTGATATTGTCTGTCAATTGTCCTTCTTGATTGCAAACCAACAGAGAGCTGTTTTAttaggaaagggagaggggagaatccCATGATGGAAATGTATGTTTTTAAGTCTAATTTATGTTTTTGtaaataattacattttggaCAAATGTTGATTTCAGACATTTTACTGAGTCGTTTTCTAGTGTGGGTCAACTGCAAAAGGGCTGTTGtaaacaaaacataaaacaagTATATCATGTAAAGAATGCAAGTTGATGTTTattcatgaatcttgccctggaggcagaactgagcgatttccgcTAGAAGGGCcaactgcaaagtcaaaattagcTATATTGTAGAAATTCATGATAACTCAAACTAGTTTTTTGGTattcatttaaggttaggcattagggttagcagtgtggttaaggttaggtttaaaatcaacTTTTGACTTTGTaactgtgccagctagtgaccactctgcagaactgcctccagaacaagattcatgatgaaAAATGCTAACCTGTGTAAAGAACATGATTATGTTTGTACACtaatcagtgtttcccaaactcagtcctgagGCCCTCTGGTTGGGTGCACG

Function

symbol description
dbr1 Predicted to enable RNA lariat debranching enzyme activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Orthologous to human DBR1 (debranching RNA lariats 1).

NR:

description
PREDICTED: lariat debranching enzyme isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110520231 False 1726 mRNA 0.45 8 55371759 55374858
TU312072 False 572 lncRNA 0.55 4 55373142 55374305
TU312073 False 464 TUCP 0.54 1 55374546 55375009
TU312074 True 981 TUCP 0.45 1 55374546 55375526

Neighbor

gene id symbol gene type direction distance location
kcnh3 LOC103481844 coding upstream 16109 55157443 ~ 55355650 (+)
LOC110520225 LOC106586338 coding upstream 326716 55021730 ~ 55045043 (+)
creb1b creb1 coding upstream 370026 54993444 ~ 55001733 (+)
LOC110520223 klf7 coding upstream 440216 54859520 ~ 54931543 (+)
LOC110520222 LOC106586294 coding upstream 682261 54673232 ~ 54689498 (+)
lcmt2 NA coding downstream 5813 55380671 ~ 55388722 (+)
LOC110520234 LOC106586346 coding downstream 31013 55405871 ~ 55411555 (+)
LOC110504295 LOC106586344 coding downstream 55335 55430193 ~ 55496588 (+)
rftn2 rftn2 coding downstream 366839 55741697 ~ 55779314 (+)
LOC110520236 LOC106586369 coding downstream 417501 55792359 ~ 55800630 (+)
G274828 NA non-coding upstream 14066 55356782 ~ 55357693 (+)
G274865 NA non-coding upstream 23618 55347885 ~ 55348141 (+)
G274864 NA non-coding upstream 24512 55347010 ~ 55347247 (+)
G274862 NA non-coding upstream 29485 55342070 ~ 55342274 (+)
G274876 NA non-coding downstream 1055 55375913 ~ 55378994 (+)
G274885 NA non-coding downstream 12174 55387032 ~ 55387567 (+)
G274892 NA non-coding downstream 23032 55397890 ~ 55398203 (+)
G274895 NA non-coding downstream 39243 55414101 ~ 55414384 (+)
G274913 NA non-coding downstream 64884 55439742 ~ 55440949 (+)
G274592 NA other upstream 496644 54874399 ~ 54875115 (+)
G273094 LOC106586310 other upstream 1530142 53841264 ~ 53841617 (+)
G273004 LOC106586313 other upstream 1713076 53657461 ~ 53658683 (+)
G272965 NA other upstream 1719328 53648825 ~ 53652431 (+)
LOC110520190 LOC106586322 other upstream 2035233 53291284 ~ 53339392 (+)
G275542 LOC106586374 other downstream 525336 55900194 ~ 55900743 (+)
G275553 LOC107595854 other downstream 540471 55915329 ~ 55916133 (+)
G277296 NA other downstream 1889709 57264567 ~ 57264892 (+)
G277973 NA other downstream 2414876 57789734 ~ 57790332 (+)
G280315 NA other downstream 4677858 60052716 ~ 60054417 (+)
LOC110520231 dbr1 other downstream 241 55371759 ~ 55375526 (+)

Expression


Co-expression Network