LOC110520232 (LOC106586350)


Basic Information

Item Value
gene id LOC110520232
gene name LOC106586350
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55375915 ~ 55382161 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597399.2
ATCGAGAATGCGGCACTGACTGCGACTGCGCGAATTTGCAGGAAGCGTTAACAGTCCTTTTACCAGTAGATAAATTGTCAACAGTCAAGACTCAAGACTGGGATCTTAGATCGTTTTAGAGACAGCGCCGATACTGTCACTGacagaaagagaggagaggtggagaaagactTCACATCCTAGAGATCCCTGTAGTCTAAGCTCCCATCACTGGGAGGCCCCACCCTCCACCGTCACCATGGCTACCAGAGGGAGTGGCCGGCCCAATGGCACGCTGCCCCAGACCAAGATATGCCAGTTTAAACTGGTCCTACTGGGAGACATGGCAGTGGGAAAGTCCAGCCTAGTTCTGCGCTTCGTCAAGGGACAGTTTGATGAGTTCCAGGAGACCACCATCGGAGctgcgTTCCTGGCCCAGTCTGTGTGTCTAGATGACACTACCGTGAAGTTTGAGATCTGGGACACAGCGGGACAGGAGCGCTACCACAGTCTGGCTCCCATGTACTACCGCGGGGCACAGGCTGCCATCGTGGTCTTTGACATCACCAAGCCGGAGACGTTTGAGCGGGCTAAAGCCTGGGTGAAGGAGCTACAGAGGCAGGCTAGCCCCAACATTGTCATCGCTCTGGCAGGCAACAAGGCGGACCTGGCTGAGAAGAGACTAGTGGAGTATGAGGAGGCCCAGACCTATTCTGAAGACACTGGACTTCTCTTCATGGAGACCTCTGCCAAGACTGCCATGAATGTCAACGAACTTTTCCTGGCCATTGCCAAAAAGATGCCCAAAACGGACACCCAGAATCCTACACACGCAGCGCGACACAGGGGAGTGAACTTACAGGATCCTGAAGCCCACAACACCCGATCctgctgtggaggaggaggagggaactaGGACTGCTTCACCGCCATCCTGCCATCCCTGTTCCCAACCTCTGGGGTCGGGCAGGGGGAcaccccctccaccctccctcccatccacagacagacagaccactattgagagaaatagaaagaggggaagaaagaaagagggagttTGAGTTGGACGGTTGTCTTTTATGAGTATTTGCCTCACCAACCGACGCCAGAGAGAGATTTTGGACAAAGACTGACGGACATGAGGAAGAAAAAGACCGTGAGAGAGTGAATACTTTGTATATTATTGAGCGCTAATCGTGGCTGTTTTACATTTTGTCTGTCTCGTTTAATTTCAATCATGGTTCCATTTGATTATGCAATCGCTGCAGTGTCAGTTCTTGAGTGGcagagagggaagaaaggagagatggagcaaGGGAGACTGAAGGATGAGGGAATGAAAGAGTGAATGGGATGCAGGTCATACTCCCTCCCTATAGTATTCCCATTTGTGCACCTCACAGAGGGGCAGAGCTGTATTAAATGCCCTCTCATCACCCTCCTCTGGCATGAGCCCCAGACAACCTGGACAACCTTAACCCAACTCTGAAGCCTTGGCCTGTGCCATTCCAGATACTCCCCAGTCCCTACAGATAGAGTAACCCATGTTAGATGGCACAGGTTACCCACAATCCCAAAAGACAAGACGGAGGATAACCACAGTTTATTGCCTCTTCTAATGCCCTTATTTCCTCTGGTGCCCTTTATTTATTCGAATCCCTAGgctatattattataattattactcCTTAGAGCAGCGGTGTTGTGAAACATCATGCTGCTAGTGCCAGTCTGGTATTATCCAGGCACCTCCTCCTCATTTATCTATCTTCCACGCACAGATGTAGATGTACACTAAAGAACCCAGAGTCCAGTATTTATTTGCTGTTGGGACTGAGTCATGCTCCAGGCCATGTCTGTCTGGCTAGACCTTCACTGGAAACCTTCACTGGAAACCTTCACTGTTTCTAACAATCAATCCACTGTCTAGTGCATAATTGGTGATATCCACAGTCTCTCCTGGTCAGTTTACATCGTCAGCAGAAATGCCTTGCCCCTTGTAGTGATAACTTATAGTTGGTATTGATCTCAAAccctagcctgatcccagatctgtctcCCTCTGCTCAACAATGACTATAGGAGTTTGCAAGACAGCAcaagcagatctgggaccaggctactcaaACCCCTCTAGACTTGCAGTCCTGTAGGTAGGAAACCAATGCATCTGGTATCTGGCCTGTCATGTTGTGAATGCAAGGGCCATGATCTACATGATATGTTCTGCTGTTCCTCATTTGTCTTGTTTCTTACTGCTTAAGAGTTGATGTCATTGAAAACATTGTAAACAAACGCTTTTAACGTGACTAATGAGCTGATGCTGTTCAAAGCACTGGAGTGAGACGGCAAGCTTTGGTGACAGAGCTACTCAATCTGTTGATGGATTCTGAATTGACCCTTAACCCCTAGACATATTAATGTAGATCTGAacagatcagaaaggttaatgctTTATGATAGTTGCTTAACCTGGCCAAATAGGTGGATTATTTTTGCCATATTGCTTCCACCTCTCCAAGATCTACAGGAGTGTCTGGTGTAGGGAAGGATCCATTTGGGATGTGTCCAAGGCTTAGCTAAGAAGAATAAGGCTGCTTACGAGGGgtttaaaaacaaaacaagaagTGCCTACTCCCATTTTCTTCTTTTGTTATTTGTTTTGGGTTTGCTTTGGCGTGTTTGGCAGAAATGTACGttgtttttaattgaacctttattttatcaggggaTCATActcagaccaaggtctcttttacagatgagcccagAGTGACAGAAAATATACGCAGCAAAATGCAAACAGAAAGAAAAacacactagctaggtttccatccaattggtgacagatttatGTGAATATGTGCGTAGGCTGGGCTGGTAGATTATATAATGGGATTATTATGGATGGGAGCAAGAATAATTGTTTTTGTTAAACGGCAGTCAAGCGTCGattatgtcaccagaataagaccctcgatatgtattggaaaggagcatcaagatcactaTGCGCTTTCACcaacctgtgaagttcatcatatattatttcatctgtagcctaataaacggcATGGTTTCCcagagtcatagtgggaggacaacacacCATATCGTCACGACTCCCAAGTTTACTtccatatgatggttattatatcaatatttgggaataaaggtgtttccaccaccatttctcacataattGATTAAGACacaaaaaagatcccaccatgtcgaacgaacaaattcTGTCGGcattttataaaattgtaccgaaacgacctgtttccatcacagctgtcgtgattTTTTCAATACGGTATATCATAACCCGCAAACAAACGGTCGATGGTtgattgttccacaaataaggtgcAAGAAAACTAAAAGCTGATTCACTTAACACAGTAGAGACCAAAGGAATTTCCAGAGTTCGCCATACCAGCTAAAAATTAAAAGTAAAGCATCTCCCTGGACCTCAACAGCTTGTAACCATTAACTCTTTCTGCACAATGTAATTCTGCTCTTTGTACAGTTGTAAGGAGCTCTTCTTGTGAAATGCAGTATATTTTGTCATCTAATTTGATTGAAACTGTTGATTTTACTAACTAGAGTACGTATATCATTACGCTGGAATTAGTCACGAAGGACACCAATCTATGTGATGAGCTCTACTTCATTTCAAAGCTAATTGTTTCATGGGCTGTCCTCATGATTAAGTCACTCATTCATGAACTCTTATTCTATGATCACAGGTTAGTGTAATAATGATGAAGTCCACACGATGTGGGAAAGACTCCCCTCAGCTCCTCTGTAAAGTGTTGTTCAATAAAGATGTGCTATTGCGCCATGTGTGCAGTGAATATGAA

Function

NR:

description
PREDICTED: ras-related protein Rab-5B-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597399.2 True 3851 mRNA 0.45 6 55375915 55382161
Loading

Neighbor

gene id symbol gene type direction distance location
armc8 armc8 coding downstream 4248 55357367 ~ 55371667 (-)
idh1 LOC106586335 coding downstream 229527 55131394 ~ 55146388 (-)
LOC110520227 plekhm3 coding downstream 253902 55068639 ~ 55122013 (-)
LOC110520226 LOC106582378 coding downstream 325056 55047518 ~ 55050859 (-)
LOC110520215 LOC106586297 coding downstream 716234 54646623 ~ 54659681 (-)
crygs2 LOC106586348 coding upstream 6940 55389101 ~ 55391332 (-)
LOC110520233 NA coding upstream 10028 55392189 ~ 55395003 (-)
LOC110504309 plcl1 coding upstream 210203 55592364 ~ 55715785 (-)
LOC110520238 LOC106586370 coding upstream 397342 55779503 ~ 55821242 (-)
LOC110520241 LOC106586374 coding upstream 508221 55890382 ~ 55923883 (-)
G275229 NA non-coding downstream 396 55375100 ~ 55375519 (-)
G275183 NA non-coding downstream 19484 55355925 ~ 55356431 (-)
G275182 NA non-coding downstream 20324 55354015 ~ 55355591 (-)
G275224 LOC106586341 non-coding downstream 24508 55350984 ~ 55351407 (-)
G275234 NA non-coding upstream 4813 55386974 ~ 55387224 (-)
G275243 NA non-coding upstream 15729 55397890 ~ 55398246 (-)
G275244 NA non-coding upstream 17642 55399803 ~ 55400473 (-)
G275248 NA non-coding upstream 22315 55404476 ~ 55404714 (-)
G274344 LOC106586294 other downstream 693110 54679918 ~ 54682805 (-)
G272713 LOC106586324 other downstream 2124831 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 2667099 52693956 ~ 52708816 (-)
il1rl1 il1rl1 other downstream 3775685 51596933 ~ 51619476 (-)
G275250 NA other upstream 27982 55410143 ~ 55411487 (-)
si:dkey-91i10.3 LOC106586420 other upstream 1888621 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 2020823 57402984 ~ 57403575 (-)
G277749 LOC106586429 other upstream 2202225 57584386 ~ 57589183 (-)
G284018 NA other upstream 7332414 62714575 ~ 62715177 (-)

Expression

LOC110520232(LOC106586350) Expression in all Baseline Samples

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LOC110520232(LOC106586350) Expression in each Bioproject

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LOC110520232(LOC106586350) Expression in each Sample
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Co-expression Network