LOC110520233


Basic Information

Item Value
gene id LOC110520233
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55392189 ~ 55395003 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974634.1
GTCAGGGTGGTGTTTGTGGCTGGCGATAGGGTCCTCCTCCTACTGTACCATCCACGCCCTCAGCTCCACTCAGCCCATACTCCTCCCCGGGAACACTGCTCTCACCCCAGGGCCCTTCCACACACTACCCCTACCTGGAGGATCACATGGCAAGTGTGGCTTTAGCTGTGGTGCCAAACGCCTGGGACCAGCCCTTACTGCTGGGTGTGAAGGGCACCACCCCAGACCCTGGCTCCTACCTTTCCTGACGCCCGCTGAGTTTTTAGAATTGGAGGGGGACACTTGTGAGGTGCCAGGTGGACTGCCATCGATGTACCAGAAGGCccatgaggagagggagaagagtgtACAGGACTGGCAGAAGACGGTGAAGGATGCCCACCTGAACAAAGAGTGGTGGCGTCAGTTCCAGGCTCTGGTGGAGCAGAAGTTCCATGATTGGCTGTTGGAGTCGGGACACAGACATGGGCTGGAAAGCCTTATCCCCCCCTGCATCACTTCCCAGGACCCCTCACACAGCGACAGCCTGGAGGCCGGGCCAAATGACACCAGGCAGGAAGGGACATCTAGATGGACAGTGGGGAGGACACCTTTTGCCTTGCTGACTTTTAGGGTTCTTGTTGATGGAGATCCCCATACAAAGAAGCTTTTGCCTCACAGTCAGCTGTTTGCTTCACAGCCACTGGTAGCACTAAGCCCTTTGTTTGCATGCTGTCCACAGTTCCAGGCAGGCCTGGATCTGATCTGAGGATCACTAGACTGCAGAAGGGTGGCCTGGTATACACCTCTGGCTCTGTTCTCGCCCCCTGTATGCTGTCTCGCCCTCCACTGCTGCATTCCTTCATCTAGTTGAGACTGGTGCATCCAGATTCTCTACCCTTGCACACTCACTCTCATGGATTTACCAATGGTGGGGATGGTAGAGAATCAGGACACAGGCAGTGGTCCTAGAGTACTTGGGGTACGACTACAGGGTACCTATTGTTAGCCACTCAGGTTAGATCTGCCTAGAGTCTGGTTCTTCTGCTGTGTGTACTGTACCAATTAAATAATAGGGAATCATTTAACTGTCTGTTAAATTCAGAGATTGACCTTCCAGTATAGGGGAAAGATGTATTAATGTGTATGATATTAAGTTGTTAATATGTATTTTCTGGTAGCGTAGGAGAGAGGGTGTGATGAATTTAAAGATGTATTAATGTGTATGATATTAAGTTGTTAATATGTATTTTCTGGTAGCGTAGGAGAGAGGGTGTGATGAATTTAAAGATGTATTAATGTGTATGATATTAAGTTGTTAATATGTATTGTCTGGTAGCGTAGGAGAGAGGGTGTGATGAATTTAAAGATGTATTAATGTGTATGATATTAAGTTGTTAATATGTATTTTCTGGTAGCGTAGGAGAGAGGGTGTGATGAATTTAAAGATGTATTAATGTATACATATGATATTAAGTTGTTAATATGTATTGTCTGGTAGCGTAGGAGAGAGGGTGTGATGAATTTAAAGATGTATTAATGTATACATATGATATTAAGTTGTTAATATGTATTGTCTGGTAGCCTAGGAGAGAGGGTGTGATGAATTTAAAGATATATTAATGTGTATGATAAGTTGTTAATATGTATTTTCTGGTAGCGTTGGAGAGAGGGTGTGATGAATTTAAAGGCCTGTGCCAAATTACAAGGAATGGAATACCTTTAGCACCTGAGTGccaatctgtttgtgctgtcatgGCAACTCCTTATCACTCATTGTCATGTCAAACTGTTTCAAAATGTTTGACTTTGGCAATGgggttggcaagagcacaaaccgatctgggaccaggctagtacgTCCCTCAGATGGGACTTTGGTCTGTAGACTATAATAGCCACCTCGAAGAAGATGGCAGAACACATTAGTGTTATGAGAAGAGAAAGATGCCTTTGAGGGAGCAGTTATATTCCGTTACATGGGCCATTCAGTTATATTCCGTTACTGTGTACTATTAAAATAAGCCTAGCATGCTCCAGAGAATGCTGATGTTGCTAGGTAACCAGGTATTTCTCTTCCTTATTAGTAATTTGCTTTGCTTCTTCGGCCAGTGTGGATGGATGAGATTGTATTATTGTTCTTCTGCCTTGCTGCTGTAGGTTAGTTCTCAGGGACTTCCCCTGTGTATGGCCTCTTTATTGTTATGTcatcttattgtgttactttttatttgatATTTTACCTTAGTTTCTTTAGCAAATATTTTcctaactctatttcttgaactgcgttgttggttaagggcttgtaagtaagcatttcacggtaaggtctgttgtattctgcgaatgtgacaaatacaaattgatttgatttgccttTCAATTAAATTGCACTATGTCGGCCTACCTACATGTTACAATGGAAATTATTTTCAATGTTTTCTAAGAGCACAATTTTGTTTAGTTCTCTTTTTTCTTTAGTCATGAATAAACTATTCATTTTTGCCTTGA
>TU312488
tcatgGCAACTCCTTATCACTCATTGTCATGTCAAACTGTTTCAAAATGTTTGACTTTGGCAATGgggttggcaagagcacaaaccgatctgggaccaggctagtacgTCCCTCAGATGGGACTTTGGTCTGTAGACTATAATAGCCACCTCGAAGAAGATGGCAGAACACATTAGTGTTATGAGAAGAGAAAGATGCCTTTGAGGGAGCAGTTATATTCCGTTACATGGGCCATTCAGTTATATTCCGTTACTGTGTACTATTAAAATAAGCCTAGCATGCTCCAGAGAATGCTGATGTTGCTAGGTAACCAGGTATTTCTCTTCCTTATTAGTAATTTGCTTTGCTTCTTCGGCCAGTGTGGATGGATGAGATTGTATTATTGTTCTTCTGCCTTGCTGCTGTAGGTTAGTTCTCAGGGACTTCCCCTGTGTATGGCCTCTTTATTGTTATGTcatcttattgtgttactttttatttgatATTTTACCTTAGTTTCTTTAGCAAATATTTTcctaactctatttcttgaactgcgttgttggttaagggcttgtaagtaagcatttcacggtaaggtctgttgtattctgcgaatgtgacaaatacaaattgatttgatttgccttTCAATTAAATTGCACTATGTCGGCCTACCTACATGTTACAATGGAAATTATTTTCAATGTTTTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974634.1 False 2493 mRNA 0.44 2 55392189 55395003
TU312488 True 693 lncRNA 0.39 1 55392257 55392949

Neighbor

gene id symbol gene type direction distance location
crygs2 LOC106586348 coding downstream 857 55389101 ~ 55391332 (-)
LOC110520232 LOC106586350 coding downstream 10028 55375915 ~ 55382161 (-)
armc8 armc8 coding downstream 20522 55357367 ~ 55371667 (-)
idh1 LOC106586335 coding downstream 245801 55131394 ~ 55146388 (-)
LOC110520227 plekhm3 coding downstream 270176 55068639 ~ 55122013 (-)
LOC110504309 plcl1 coding upstream 197361 55592364 ~ 55715785 (-)
LOC110520238 LOC106586370 coding upstream 384500 55779503 ~ 55821242 (-)
LOC110520241 LOC106586374 coding upstream 495379 55890382 ~ 55923883 (-)
LOC110520251 LOC106586357 coding upstream 588870 55983873 ~ 55985477 (-)
LOC110520250 LOC106586358 coding upstream 592100 55987103 ~ 55988048 (-)
G275234 NA non-coding downstream 4965 55386974 ~ 55387224 (-)
G275229 NA non-coding downstream 16670 55375100 ~ 55375519 (-)
G275183 NA non-coding downstream 35758 55355925 ~ 55356431 (-)
G275182 NA non-coding downstream 36598 55354015 ~ 55355591 (-)
G275243 NA non-coding upstream 2887 55397890 ~ 55398246 (-)
G275244 NA non-coding upstream 4800 55399803 ~ 55400473 (-)
G275248 NA non-coding upstream 9473 55404476 ~ 55404714 (-)
G275249 NA non-coding upstream 10502 55405505 ~ 55405705 (-)
G275250 NA non-coding upstream 15140 55410143 ~ 55411487 (-)
G274344 LOC106586294 other downstream 709384 54679918 ~ 54682805 (-)
G272713 LOC106586324 other downstream 2141105 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 2683373 52693956 ~ 52708816 (-)
il1rl1 il1rl1 other downstream 3791959 51596933 ~ 51619476 (-)
si:dkey-91i10.3 LOC106586420 other upstream 1875779 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 2007981 57402984 ~ 57403575 (-)
G277749 LOC106586429 other upstream 2189383 57584386 ~ 57589183 (-)
G284018 NA other upstream 7319572 62714575 ~ 62715177 (-)

Expression


Co-expression Network