LOC110520234 (LOC106586346)


Basic Information

Item Value
gene id LOC110520234
gene name LOC106586346
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55405871 ~ 55411555 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974635.1
AGCAGATTGACTATGCAGCGCCTTTAAGGGTGGGCGGGCTTTAGGATGAGAGGCGGGACTTCTGGGTTTCACGTGGGCGGTTCTGATTTGACAGAAGGAAGAGAACTAGTGACAGAAGGAAGCCAACATCAAAAAGCCGGGTTGTTCTGTTGGTTTCTTGAAGAAACTGGGATCTATGGCCGTTAAAGGGATGAATCTGGGCAGTGTTTGCTGTCTTGTCCTGTATTTTGTTGCGGCAGTGCTTGCAGGGCGAGATTTCTACAAGATCTTGGGGGTGAGCAAGTCGGCATCTGTGAGGGACATCAAGAAGGCTTACAGAAAGCTGGCTCTCCAGCTTCACCCTGACAGAAACCCCGATGATCCTACTGCTGCTGACAAATTCGCAGACCTGGGGTCAGCCTATGAGGTGCTTTCAGATGATGAGAAGAGGAAGCAGTATGATGCATACGGAGAGGATGGTCTGAAAGAGGGTCACCATGGTTCTCACAATGATATCTTCTCCAGTTTCTTCGGGGACTTTGGCTTCATGTTTGGAGGTAACAGGCAAGGACAACAGGACAGGAACATTCCCAGAGGAAATGACATAGTACTAGACCTGGAGGTCACACTCGAAGAAGTGTACTCTGGGAACTTTGTAGAGGTTGTGCGCAACAAGCCTGTAGCCAAAGAGGCCCCTGGGAAAAGGAAATGCAACTGCAGACAGGAAATGAGGACGACGCAGCTCGGACCTGGACGCTTCCAGATGACCCAGGAAGTAGTGTGTGACGAGTGCCCCAATATAAAGCTGGTGAATGAGGAGAGAACTTTGGAGGTGGAGATTGAACAGGGcgtgagagatgagatggagtacCCTTTCATTGGAGAAGGTGAACCTCACATCGACGGCGAGCCAGGGGATCTACGCTTCCGCATCAAAGTTATGAAACATCCAGTGTTTGAGCGTCGAGGAGATGACCTGTACACTAACGTCACAATCTCTCTGGTAGAGGCTCTGGTTGGCTTTGAGATGGACATCACACACCTCGATGGACATACGGTTCACATTGAGAGGGACAAGATCACCAAGCCTGGTGCCCGGCTGTGGAAGAAGGGAGAAGGCCTGCCAAATtttgacaacaacaacatccGTGGATCTCTCATTGTCTCGTTTGACATCGAGTTCCCACAGACACAGCTGGATGACAATCAGAAAGAGGGAGTGAGAGGGATTCTGAAACAATCGTCAGTACAGAAGGTTTACAATGGACTACAGGGATACTGACACACCAAAAGACAGTCTGGACTGAGTTCTGcgccacacaaaaaaacacacacacaaacaaaggagCACGCTTAGGGGTGTATTTATTTTTTGATCTCAGGATGggttgatttgttttatttttttatattctgAAGGTGGCttgatgttattttttttaaagaagtccTGGTTATATTTAATGCTGTATTTGTCCCAAAAATTATTTTACTGCCACCTTAATTCCCCCTCAAATTGCAGATGACTTATTTGCTTCAATTTGGAGAGTTTGGATCTTCAAGTCAACATACCTTTTTAATGTCAACTAATTGTCAACCACTCACATACATCTTGGATCATGAAAGCTCCCATTTCCAATGTTAAACCCATCACACCTGACTGAGCTCTAGAAGAGGAGCTTTCCTGGAATCAAAGGACTCTGGAGTCAACAACTTCTCATGGACATCAGCAAGACTGGAATACTATCACCCTCCCTGTTCTGATAACAGTTTTATGTATGTGGTACTGTACTAGGTCGTTTAATTTAACCTTGAGGGATTTTATCCCCTCCGACACCTTAAAAGATTCGGTCAAAACACTTTGTAAATAGGAAAGAACAAACAACATTTTTAGTTTTTTGCTTTTGTTGAATTAGATGATGTTTAGATGTATTATTTGTGGTGTAAGGTTATGAGTGAGCATTCTGTCTGCTGAAAGAAAGGCCACTGAGTGTACTTCTGGAGCTACCTAGCTGCCTCCTCGTTAGGGTGACAAGGATATCATCCTCGTCTGGAGACTCCATCTCCAGCTTGCTCTGCCTCCCACCACCATCCACCCTCTTGCTCTGCCTCCCACCACCATCCACCCCTCTTGCTCTGCCTCCCACCACCATCCACCCTCTTGCTCTGCCTCCCACCACCATCCACCCCTCTTGCTCTGCCTCCCACCACCATCCACCCTCTTGCTCTGCCTCCCACCACCATCCACCCCTCTTGCTCTGCCTCCCACTACCATCCACCCCTCTTGCTCTGCCTCCCACCACCATCCACCCCTCttgctctgcctctcctctcagactgagtgtgtctgaaatggcacactTTTCCCTAAGTAGTGTGTTACTTTTTGACCCGctcccatagggttctggtcagaaGTTGTGCACTTTtaaagggcatagggtgccatttcagccCTGTGTTCTTTGGACTGCTCCTCCTGACTGAAAGAGACTACTGTGAATAATGGGATGTGCTATAGTACAGGAGGGAAAATGTACTTTTCAATTAAAAGTTTATAATAAAGAATTACTTGGTCAAATAACCTTACATAAAGGTTACTTTATGCTTTAAACAAAATTGGAGTGCATTTTCAGTA

Function

NR:

description
dnaJ homolog subfamily B member 11-like

GO: NA

KEGG:

id description
K09517 DNAJB11; DnaJ homolog subfamily B member 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974635.1 True 2617 mRNA 0.47 10 55405871 55411555

Neighbor

gene id symbol gene type direction distance location
lcmt2 NA coding upstream 17149 55380671 ~ 55388722 (+)
LOC110520231 dbr1 coding upstream 31013 55371759 ~ 55375526 (+)
kcnh3 LOC103481844 coding upstream 50221 55157443 ~ 55355650 (+)
LOC110520225 LOC106586338 coding upstream 360828 55021730 ~ 55045043 (+)
creb1b creb1 coding upstream 404138 54993444 ~ 55001733 (+)
LOC110504295 LOC106586344 coding downstream 18638 55430193 ~ 55496588 (+)
rftn2 rftn2 coding downstream 330142 55741697 ~ 55779314 (+)
LOC110520236 LOC106586369 coding downstream 380804 55792359 ~ 55800630 (+)
LOC110520240 LOC106586372 coding downstream 422188 55833743 ~ 55849324 (+)
LOC118964367 NA coding downstream 430650 55842205 ~ 55842343 (+)
G274892 NA non-coding upstream 7668 55397890 ~ 55398203 (+)
G274885 NA non-coding upstream 18304 55387032 ~ 55387567 (+)
G274876 NA non-coding upstream 26877 55375913 ~ 55378994 (+)
G274828 NA non-coding upstream 48178 55356782 ~ 55357693 (+)
G274895 NA non-coding downstream 2546 55414101 ~ 55414384 (+)
G274913 NA non-coding downstream 28187 55439742 ~ 55440949 (+)
G274914 NA non-coding downstream 32034 55443589 ~ 55444242 (+)
G274916 NA non-coding downstream 35352 55446907 ~ 55447994 (+)
G274917 NA non-coding downstream 41295 55452850 ~ 55454643 (+)
G274592 NA other upstream 530756 54874399 ~ 54875115 (+)
G273094 LOC106586310 other upstream 1564254 53841264 ~ 53841617 (+)
G273004 LOC106586313 other upstream 1747188 53657461 ~ 53658683 (+)
G272965 NA other upstream 1753440 53648825 ~ 53652431 (+)
G275542 LOC106586374 other downstream 488639 55900194 ~ 55900743 (+)
G275553 LOC107595854 other downstream 503774 55915329 ~ 55916133 (+)
G277296 NA other downstream 1853012 57264567 ~ 57264892 (+)
G277973 NA other downstream 2378179 57789734 ~ 57790332 (+)
G280315 NA other downstream 4641161 60052716 ~ 60054417 (+)

Expression


Co-expression Network