LOC110504309 (plcl1)


Basic Information

Item Value
gene id LOC110504309
gene name plcl1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55592364 ~ 55715785 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974642.1
ACTGTCAGTTGTGTTCCTCATTCTCGTCAACATCGGCTGTTGCAGACTGACTATAAGCGATTAGCAGTTTACGGTACTTTGAGATCTCAGTCAATGTACGGAACTATGTAATATAAATAAGTATTGTTCTCCCTAACAGAACACCATATATCACAGCGTAAAGTTCACTGCCTTGCACTTTGGTAACTGTGTCGGTGATGGTAAGGCAGACTGAGTAAGCTACTTTGGGTAACCTACACCTAAATAGGTTAGTTGTTTTTAACGATTTTTATTGCGAAGTTTCCTCTTCCCAATGTTCACCTATCATTGTGTGTGAAAAAGCTTTGTTGTTGGAAGCATCCAGGACAGCGCTTTCTTTCATGGAGAGGTAGGGCTGATGCTGCCAATCTGTGAAACTGATCGGACTTGTTGCGCGAAAAACACGTCCCTCAGGAATGCATAGTATTTTGGGTAAACTCGTTATCAAAACCAATTTACATTTAAGTCTGCGCGTGTCAGTGGTGTTTTGATTTCCCAACAGGGCACATTTCCGATTGTCTATAGTGGGTGTTCCCCACCCAATCCTTTGATTCTATACCAGATAGTAGGATATACAAGTCAAGTCGACTTCGTGGACACTGGAGAGCGAACATGAGATTGGATGTGATGGACTTTCGGCATAATTAAGGACAtttaagtaattaacctacccgACTGCCGGACCGGGGACGCTCTAACGGACTAACGGAATAGCCCGAGGCCAGATGAGCTGGAGTCCGGTTCCGTGATTTAATGTTTTTGGAAAGGCGCAGCAGACCCCTCAATACCCGGGCACTTCTGTAAATAAATGGCACCCATAAAAAAACAACGACCAACGCAGACTTACTCCGAGGCAATACGTACAATTTTGTGATTTCCTAACCTGAAACTTGAACTTGGGCTTCTGTTGAGAAGATGTCGGAGCAAGAGCATTATGGGGACGGTCTGTGCGATGATGGAGCTCCTGAGATCATCCCGCCGAGAGCGTCCAGGACGGGGAGGCGGAGCGGAGTCATCCTCCCCGGCCAGGACAATGATACCATCATCCTGGAGGCAGTGAGGGCGGCCCCCCGCAGGAGCAGCATCATCAAGGATCCTTCAATGCACAAGTTGGCCGGCGGGCGCAAGAAGACAGTGTCCTTCAGTAGCATACCCTCAGAGAAGAAGGTGAGCAGCGCGGCCGACTGCCTGGCCTTCATGCAGGGGGGCTGTGAGCTGAAGAAGGTGCGTCCCAACTCCCGGATCTACAGTCGTTTCTACACCCTGGACCAGGACCTCAGCTGCCTGCGCTGGGAGCCCTCTAAGAAGGATGGGGAGCGTGCCCGCCTGGACATAGCCACTATCAGGGAGGTTAGGACGGGGAAGAGCACTGAGACCTTCCTCCATAACGGACCTGCTGCAGAACACCTGGCTGAGGAGGCAGCCTTCTCTATTATCCACGGGGATGACTACcagTCTCTGGACCTGGTGGCTCTTTCAGCTGACGTGGCCAACATCTGGGTGACAGGGCTCCGTTACCTGGTGTCCCACCCCTCTGCCATCGGGCATGGAGGTGGGGCAGGCGGGGGAGGAGGTCTGGGAGAAGGGAGCATCATAGGGGAGGGTAGCCTCGGCAGTAAAATGAGGAGTGAATGGCTGGCCACAGAGTTTGCCGAGGTGGATGAAGACGGGTATGGGATCGTCGCAGAGGATACGGCCGTGGCAACCATCTGTAAGCTGTGTCCTGGCATCAAGGAGGCTaagGTGCGTCTGAGGTTCAAGGAGATCCAGCACAGCAAAGAGAAGCTGACGTCTCACGTGACACGCGAGGAGTTCCAGGAGGCCTTCTGTGAACTCTGCACGCGTCCAGATGTCTATTTCCTATTGGTCCAGCTCTCTAAGGATCGCGAGTGTCTGGACGCCCAGGACCTTCGTCTCTTTCTGGAGACGGAGCAGGGCCTGTCCCTGGCCACAGCTGAGGGCTGTTTGGAGCTGGTCCTACGCTTTGAGCCCTCCAGACCAGGCCGAGAGAGAGGCTTGCTGGGGCTTGACGGCTTCGCCCGTTACCTGCAGTCTCCAGAGTGCCAGCTGTTTGACGTGGAGCACCAGGGAGTGTGTCAGGATATGGGCCTGCCCCTGTCCCACTACTACATCAGTACTTCCTATCGGTCCTATCTCCTGGATGACCAGGTCCATGGGAGGGCTGATCTAGGGGGTTTGACCAGGGCTCTGCAGGCCGGGTGTCGTTGCCTGGAGCTGGGGGTGACAGACGGCCCAGAGGGGGAGCCTCTCCTGGGGGTAGACTATGGTCCTGATgcccaccgccaccaccaccatcaccaccacgcCCCTGTCACCATCCGCAGTGCTCTGGAGGTGGTGAATAAGTACGCCTTCCTGACCTCGCCCTACCCGCTTCTGCTCTACCTGTGCCAGCGCTGTTCCCCCTCCCAGCAGCGTACCTTGGCCCAGCACCTGAGGAAGGTGTTCTCTACACGTCTCTACACCCCTGAGGCCCTGCCGGTCAGCCCGGTGGGGCGAGCCACCACCCTGCCCTCCCCTGAGCAGCTGAAGGGCCGGGTGCTGCTGGTGGGGAAGAAGCTACCCCCTGAAGAGGAGGGATCCGAGGGAGAGGTatcagaggaggatgaggagatagGGGGAGGCGGACCCTTGGCTGGCCGGCGAATGACCATCCCCGGAGAGGAGGAACTGGGTGTGGTTTTAGTGGTACCCCCGCCCCCTCAGCCCAGGAGACTCCGCCTCCAACGCGAGCTCTCAGATCTGGTGAGCGTGGCAAGAACTGGAAGCCGTAGCTTCTACAACCACCGAGAAATAAGGAAACAAGGACAGCAGCACTCCCCACCCAGCACCCCCTCAACACCGGGCACGCCCTTACTCCCTGATTCGGCCTATTGGACTCTGTGCTCCCTGGGGGAAGGAGAAGCGGGCCGGCTGGCCAGTGAGAGCCCAGAGGACCTAGTAGGCTTCACCAAGCGTACCCTGACCCGTGTCCGGCCCAGCTCCGTCCGCCTGGACTCCTCCAACCCCAACCCCCAGGGGTACTGGAAGGGCGGGGTCCAGCTGGTGGCCCTCAACCAGCAGACCCCCGGGGCCATGCTGGACCTCCACAGGGGACGCTTCATCCAGAACGGGGGCTGTGGCTTCGTGCTGCGCCCGGGGGTCATGAGAGACGAGGTTTCCTACTTCAGTGCCGTGACCCAGGGGTGTGTGCCCGGCGTGCCACCTCAGACCCTCAGGGTGAAGGTGATCAGCGCTCACAACCTGCCCAAGCCGCAGGGAGCTGGGGCCAAAGGAGAGGTTATAGATCCCTACGTGGTTCTGGAGCTACATGGGGTACCAGCGGACTGCGCTGAGCAACGGACCCGGACCGCAGCACAGAACCAGGATGGCCCACTGTTTGATGAGACCTTTGAGTTTCAGGTGAACATGCCAGAGTTGGCGCTCCTCCGCTTCGTGGTATTGGACGACGACTACATTGGAGACGACTTCATTGGCCAGTACAGCGTGGCCTTCGAGTGCCTTCAGCCGGGCTACCGTAACGTGCCCCTGATGGGTCTGGAGGGAGACCCCTTGCCCCACGCTAGCCTGTTCGTCCATGTAGCCGTGACCAACCGACGAGGGGGGGGCAAGGCCCAGAGGAGGGGTCTGTCTGTGCGGAGAGGGGTGTGGCGGGGGCGAGAGTACGTGACCCTACGGAACACGGGTATTAAAGCTCTGGATGATACGTTCCGTCCCGCTAACACCCATCTCAGAGAGGCCACAGACCTGCGGGAGGACGCACAGAGTGCAAGTGTGAGTTTCAAAGAGCAGTGTGGACTCCCCCCGGTGGCAAAGCTGAAGCAGTGCATCCAGAGCCTGGCCACACGGTTGCAGACCCCAGAAGGGCCCCCGGGGGCCAGCATGACCCTGAGGGATGGCTACCCCCACCTGGAGGCCCTGGGCAGCATCACAGAGGTCACGCGCAAACTACTGAATCACTATGATacgATGATCTCGGCCAAGAAGCAGCTGATCGAGAATGCAGACGCTGTGCAGGAGAGGATGGCCCAGGtgcagagagaagGAATGGAGTTCCACGAGGAGCTGCCCAGgctgggagagaaggaggggctgAAGGGACACAAGCAGAGTAAAGCCCTGGAGAGTTTCACCTGGAATATTACTGTActgaagggTCAGTGTGATCTCCTGCGCAGTGCCAAGGTAGACTCTCTGGATGCTCTGAGACAGTTGGCCCTGGCCTGTGAAGCCTGTGGCCTCACCTCCACGACCTCCTCCTGCACCTCTTTTGGTCCCTCTGATCTCTTCTACACCTCCCACAGCAGGAGGGGCAActcccaggagaggagaggaagcacCCAGGAGAGGAGGGTGAATACCCATGGCAACGGACGAATATGACACCCCCAACCTACCAGTGAGAGggaagggggatagagggatCGAGTGGATGAGATGGTGACAACCCCTCAAATCCCAAACTGTCAGAGAaagggagggtggggagagagagagatggcgaaaGAGAGCAGAGTTGGAAGGGTCTAGAGTAGAGCCCAGAGCCTATACCTTTATCCAGAGTAGTAAGACTAGTGAAGAATCGTTGCAGTAATTTGACGGCTTACTTTGTGTTCATCCGTGGAAATACTTTTGTGCTTATTTAAGTCGGACACTTGAATATAACGCTCCTACAATTTACTTCAATGTTTTTTTCTCCCTAAAAAGGGAGTTGTGATTGTGAAAACACGTTGATCTTAGGTAAGAAACCTTTGCTGTGGAGAGGACGAGTGAAGAGTCTCTGTCCTTCTGAACCCACCTAATTGATCCCTCGGGAGGATGTGATGTCACGCTGTTGATGCCTTGAGGGCCCGTCTCACCATGGATACCACAGGGGGTTGAGTGACAGGTGACCCTCCCAGTGTCCCACCGACACAGCTACTGTTACAcccagcccctctctccttccttaccCCTCTTTATCTCCTTCACCCAGAACCCTCGGTACATGGAGTGTTTTGAATGTCTAGCCTGTCTTGCGTACCCCTCTCATCTTCCCTGAGAGACCCCGCCAGGTATCCTTTCCTGAGAAGATGGGAGGAGGCAGATGTGTTGGTAGTTTTACATGAGATGGCTTAACCCTGCTTCAGGCTACTATGTCCTACCTGAGACCATCCACAGGTGTCAGATGGCTAGGGGCTAACAGTGTCACAGTATCACAACATCACAGTAAGGTCTGGAAGACAACCTGAAGACAACCTGAAATAAGAGGACCTGTTGggtgtgattgattgattgattatttgaTTGTGTTTAAAAGGCTTCATTGATTAgttgggcagcaggtagcctagtggttagagcgttagggcAGTAACCAAACGGTTGCTTGTTCGAATtgaattcctgagctgacaagatggaaaaaatctgctgttctgcccttgagcaaggcagttaacccccacaacaactgctccccgggcgccgaagacgtggatgtcgattaaggcagcccctcacacctttctgattcagaggggttgggttaaatgcagaaggcacattttggttgaatgcattcagttgtgcaactgactaggtatccccctttcccctttgaTTGATAGATGAGTATTACCCTACACAAGGATGTGGTTGGCATGGCTGTGTTGCTATGAGGGAGGgggccctctctctgtgtattgacTGAAAGTATGTGCTGGGTTTGTCCCAGCTTAAAAACTCACTCAGCAACAGTAAAGGACTCTGACAAAGAACTACAAAAATGGCGCGACTAGATGCTACTACATCCTTGGTGTGCTTATGCTGCTTGTGATGGTCGACTGTGGGACATGGATGCCATTGTTTTTCCAATGTTAGATTTGTGCTATTAAGGTAGGTAAATACGTCGTGTAATTTATATTTTACTGTGTCATAGAACCCTTTCTCTACCAGTGGTGGCTGGTATCACTTTAAATCGGAGGATGGgaccaccagcctccactgctctctACCTTTCCTACCACCTGTGATCCAAACACAGCAAGAGGCAGAGGCCCCCAACACAACAATACTACACCCAGCACTGAGAGAGCACTATAGGGGCCTGGCATCAAAGAGACACAGACAGTAAAGATAATAGAGGATCTTACAATAAGGGACATTTTCATCACAAGATGAGAATGGGTTGAATGGAAAGTATTCCCCCAGGGCCCCCAGCAGAGCACAGGGTCTTCTGGGGCTCTGAGGTAAACGCACCTACCGTCTGTCATTCTACAGTCTGAACAGCCATTTCAACACACCCAGCAGTAAAGTTGGAGGAACATTTAAATTCGGCATAGAAAGGATAATACCTGACATAGGTTCTTTGATGCATGCAGTGGACAACCCATGTtgacctgcctctctccttctcttggaTGGATGGATTCATTATCATCTGTTGCCTCCTTCACCAGCCCACCTTCACACATCTCTCTTAAAGgcgctgcatggtcaatccgacgtctgcattgaccatgcagcgtTGACAGTGatatggcctctgcagaagtcagagcCAATTTAGgcttgatccgaaaatgtggtTGGAGGCTTCGTATGGAGGGTGTGACGCAATCACATAGCCTCCAGAGGCACGTAGAGGCCAAATCAAGCTCCGTAACGCATCGCCGTGCACCTCTCAAATGTTGTAACAGTGAGGAGGGCTCCGTATACtgtagctccgcattgacatgattgatTGATGGTAGGTGAGGACGGGAGGTCCTGCagaaacacaaactcacttccttgacaacttcctccACAACAGCTCTGCGCTGCTCGGCGAAGTGCAACAAGTATGAATGACCTAACTCCTGCAAAGGCCATATCAAGgtaaatgctgcacggccaatCAGACGTCGGAATGACAATGCAGCACCTTTCAGGTCATTCATACTTGTTGCACATTGCCGAGCAGCGCAGTGCTGTTGTggaggaagttgtcaaggaagtttGTGTTTCTGCAGGACCTCCCGTCCTCACCTACCATCAACCAGATATAGATATACGGAGCCCTCCTCACTGTTACAACATTTGACAGGCGCACAGCAATGAGGAAGGTCGCTATACTATAGCTCAATATACTCAACTGGCGTGTTGATGTTTTGTTGCAGTattgaaaaataaaaacatgaaatAAATCCTCTAATCCAACGGCACTCTGGTCCAACACCACAGTGCTTTaatttactatactgtagttacTCTCTTTAACCCGCGTCTGTCTTAAACCTTAAACCTACCTGCCCTCCACGCTCTATGTGGTGTTTGACTTTACAGTCCTTACAGCGATGTGTTTAGGTTATGTcttcttcccaaatggcaccctattccctacatagtgcactactttagtagtgcattactttagtagtgcactatatagggaatagggtgccatttggtatacACTCTGTATCTATCTGTGTATGCTATCTTCTCTGACCGACCTCTCTGACCGACCCTTCAAACAAATCTTTGTTTCGTTCTGTCTGCGTACGCTCATGTTTTTGTAAAAACAAATATACAAAAAGAAGAGTATTTATTAAAGGTGGTGACGAGTGTGTTTTGAAACCAATGCATATTATATTAAATGGACgttgcttttattttgaaaagctAGTTTGTTTTCTATCTGATTAACCAAATGTAACAGTTGTACCCTTAAATGACTAAATAAAACTATTTTATTGACCATTTAA

Function

symbol description
plcl1 Predicted to enable GABA receptor binding activity; inositol 1,4,5 trisphosphate binding activity; and phosphatidylinositol phospholipase C activity. Predicted to be involved in phosphatidylinositol-mediated signaling. Predicted to act upstream of or within intracellular signal transduction; lipid catabolic process; and regulation of GABAergic synaptic transmission. Is expressed in hindbrain; lateral line nerve; and spinal cord. Orthologous to human PLCL1 (phospholipase C like 1 (inactive)).

NR:

description
inactive phospholipase C-like protein 1 isoform X1

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0032228 regulation of synaptic transmission, GABAergic biological_process
GO:0005509 calcium ion binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0070679 inositol 1,4,5 trisphosphate binding molecular_function
GO:0050811 GABA receptor binding molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974642.1 True 7769 mRNA 0.52 10 55592364 55715785

Neighbor

gene id symbol gene type direction distance location
LOC110520233 NA coding downstream 197361 55392189 ~ 55395003 (-)
crygs2 LOC106586348 coding downstream 201032 55389101 ~ 55391332 (-)
LOC110520232 LOC106586350 coding downstream 210203 55375915 ~ 55382161 (-)
armc8 armc8 coding downstream 220697 55357367 ~ 55371667 (-)
idh1 LOC106586335 coding downstream 445976 55131394 ~ 55146388 (-)
LOC110520238 LOC106586370 coding upstream 63718 55779503 ~ 55821242 (-)
LOC110520241 LOC106586374 coding upstream 174597 55890382 ~ 55923883 (-)
LOC110520251 LOC106586357 coding upstream 268088 55983873 ~ 55985477 (-)
LOC110520250 LOC106586358 coding upstream 271318 55987103 ~ 55988048 (-)
LOC110505323 LOC106586359 coding upstream 281981 55997766 ~ 55999561 (-)
G275376 NA non-coding downstream 232 55591744 ~ 55592132 (-)
G275368 NA non-coding downstream 7010 55585126 ~ 55585354 (-)
G275366 NA non-coding downstream 10729 55581389 ~ 55581635 (-)
G275363 NA non-coding downstream 13876 55578157 ~ 55578488 (-)
G275361 NA non-coding downstream 14463 55577686 ~ 55577901 (-)
G276397 NA non-coding upstream 2031 55717816 ~ 55718120 (-)
G276400 NA non-coding upstream 5808 55721593 ~ 55721866 (-)
G276401 NA non-coding upstream 6406 55722191 ~ 55722410 (-)
G276443 NA non-coding upstream 17715 55733500 ~ 55733834 (-)
G276445 NA non-coding upstream 22585 55738370 ~ 55738588 (-)
G275250 NA other downstream 180877 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 473152 55068639 ~ 55122013 (-)
G274344 LOC106586294 other downstream 909559 54679918 ~ 54682805 (-)
G272713 LOC106586324 other downstream 2341280 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 2883548 52693956 ~ 52708816 (-)
si:dkey-91i10.3 LOC106586420 other upstream 1554997 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 1687199 57402984 ~ 57403575 (-)
G277749 LOC106586429 other upstream 1868601 57584386 ~ 57589183 (-)
G284018 NA other upstream 6998790 62714575 ~ 62715177 (-)
G286522 NA other upstream 9253764 64969549 ~ 64970755 (-)

Expression


Co-expression Network