rftn2 (rftn2)


Basic Information

Item Value
gene id rftn2
gene name rftn2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55741697 ~ 55779314 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597403.2
TATGACCTAAACTACATGAAGTGTGACAGAATATCATAAAAATAGAGCTAGGCTACAACTTCCTCAGTTAGACATCAGTGGATGTTGTTGCTGCCCAAATCACCTCCTCTCCTTCGGTCCTCCCATTTTTTCTGTCTCCTGCAAGCTGCTTTGGCTTTTCTAAATCACACAGACGTATTATTCGGCTTTACTGAAACCACTCTCGTTTAGACGATTCGGTGCTGGTGATAAGCTACACGTGATATCGTTTTATCGGTGAAAATAAAACCAAAAGTGGATTTGTTGACAATTCATCGACGTTTGCAACAAAGTAGCCGCTCGCGCAGAGGAGTTGTCAAATGTAACTTTTTTCCGTGAGTTTTTTTCAAGAGGGAACGAGAGCTGCACGCTCCAGACGCACGTTTCGTTTCAAAATAAGTTTTTACAGAAAAATAATATTCTCACTGCcccccaaaataaaaaataacagtgATTATCCGGTGGCACTCAAACGGATTAATAGCGTCTCCGGGGATGGAGTAATCCCGTTAACTTCATAGCAAGAACAAAACTGTTTGCATAGCGGAGCGGGCTCTTCCCGTCACCGTGCACGGGCAGTTTGAGCTGGATATCCCACCACAGCACTATGGGCTGCGGATTGAGGAAACTGGAAGACCCGGAGGACAGCAGCCCCGGGAAGATCTACTCCACTCTGAAGAGACCACAAGTAGAGATCAAAACCGACACCGTTTACGAGTATGTGCTACTGGATTTCAGTTTGGAAGGTAGTCGCCCCACGGTGCAGTATGTGTCCTCTCTGTGCGAGCTgtcccaggccctgcagccctaCTACACCCAGGGCTATGTCCTCACCACTCTGCATCCCATCATTCTCTCTGTTGGACGCACACGTTCCCTGCCCTTCAGCCTGCTCTACCGAGCCATCCTGGCCCGCCCACGACCCAGTAAGCAGGTGGTGTCCATGTGTCACAGTGTTCCTGTGCTGAGGGTGGAGGAGTGGCCTATCCCAGGGGAGTCCCTGACAGACGACACTGTTAGAGCACTGATCGACAGGGTGAACAGTAGTGCCAGGGGCGGAGTGAGGTTTGTGGGCTCAGTGCTCCAGCAGGCTGGAGGAGGGGGCAGTAACGGCAGGGTGCCTAGCCCCAGGAGAGGCTATcaatcccccccacacactcctCCATGTACCCCTCCTGGAGAAGGAGAACTGGAGGATCACAGCCCTACCTACAGCCCTGaCCTAAGGTTGCTGGTGTTCTTCCACTCATGGGCACCAGGTTGTGCTCCGCTGGAAGCTCTGGCCTGTCAGTACCACCAGGGGGCACTGTCCATGCGTGTGTCCAGGAAGGGTCAGGTGGTCAGCGCGCTGGAGGCCGATTGGCTGGAGCTGACAGCAGCCTACTACCGCAAAGGCTGGTCATTGGTGGACTCGTTTGTGTACTGGGACACACCCAAAGGTGAGCCCGTGCCCAGGTCTCTAGAGGGGTTGTTTGTCTATGAGGAGAGAAGCACTGCCCCTCCTGCCAACGACACCATCGTAGTGGAGCAGTGGACCGTCATCGAGGGTTCTGATGTGAAGACAGATTACGGGCCACTCCTTCACACACTGGCTGAGTTTGGCTGGCTGCTCACCTGTGTCCTGCCCACACCTATCATCCGCCATGACAGATTGTGTGTCTCCAGTGATGGTAATCTGGCCACCAAGCAGGTGGTGTTCCTACAGAGACCAGTCAAGACGTCTTCAGTACCACAGAGGAACCAGGCGGGGTCCATGCAGAGGGACGTGGCCACTCATTCTGTGAGTCGTGGTGTGGGCAGCCCCCGAACACACCCCACTGAGGAGCTGTCCCCCACCGCGGGGGGTATCGGGGGGTTCCCCGTCTTCGGAGGGGGGTACCCCAGCGCCCTGTCCCATCTGGAAGAGGGAGGCTTCGAGCAGGACGACGGGGCGGCAGAGGTCACATGCATGTGAACCCTGAGATTGACACATAGATAATATCTATCCCCCATCTATCCCTCTAATCTCTTCCCTAACCAAGAAGACCATAGATTAGAAAGCAAAACGTGGCACTTTTTAAGGTATTTTATTATGAAGCCATATGCACCATTTTGAGATGGTGTTATTtccttttttaaacattttgttggGAAAACCAAGCAGTCTGTGTTCACTGACATTGAGATACTTTTACTCATACCCACATTCTTCCACACATACACTTATTAGTCCTGATTCAAAAAGATCACATTGTTCACGCTGCACCTTTTCATGTGAtgagaacacagacacacacattcacacaactgTCACCAGCACAAATCAGGAAGCACAGGACACACCAGGAAGAACCTCTGTGTGCACAGGCAGACCTCTGGACTAATCTCCCTGTGACCCACAACACACCTGTTGGACAGATGTGTCCCAATGTTTTTGTTCTTCAGTCACTGCTCACGTTTCAGACAATGTTCCTGTTTTGGGAAACCTCCTCACCCGCTCATCCACCCTCCCCTTTAGAACTGCCAACACCTCTATTCAATACAACTCTCCTCATTCTGACGTGACATCACGTCTGCTCAGGCTCAAGGTGACACGGTTCAGagacacaacatatctacatcctgccaccagctcctctccctcttctcctttcccatAAACACACCCAGCAGGATGTAAACATTTATCAGGTGGACAAATAGACACGTTCGCTGTGTTGGCGGTACTGACAATATCCAGGTCAGACTTGTCTATGGGCCTGGCGGTGAGTACAGCCATATTACAAacagccctctctctttctgtgatgGTTGTGTTTAACTCGGAGTGTTTGAGTTCAGGCCTGGAGAAGCTTGTTTGTACATTCATTTCTTGGTTGAGTTCAGatgtgtttttatatatatatatacacacacacacacacacacacacacacacacagagagatagaggactgCCAAGCCACAGGGGTGCCTGGGTAAGTAGGAACGATTGGATAATATTTCTGAgatgtacacatacagtacattagagcCATTGTATTCAGACTGTCTGATTGGTGCTAAACATCTATTGTTCACTAATCTGTTCATGATGTCATCATTAGTGTATATTTCTTAAGTATTTTATAACAATTTTACCAGTTGGCATCGGATCAGTAGATATTCTGTTCCTGCACCTATTCTGTCATTGGAAATTGCTGGTAGTTTCATCATAGCCACATGGCACTGGTTCTCAGGCCTCAATTGTTTCATTCTGCTCAGTGCTGATGTAGATTCCTCTCCTAAGATCTTGAGACAAAAGCCCTAGTTTGTTCAGGAGATAGTGACAGTTGactcttttttaaatgtttgatcATGTGAAGGGCTTGTTGTATAAGAAAACAACACCATGCATCGTAATGTTAACAGGAAGTATTACTAGAGATGTACAGACTAAGTTTTTAAATGTTTGATCATGTGAAGGGCTTGTTGTATAAGAAAACATCACCATGCTGCTGTACATCGTAATGTTAACAGGAAGTATTACTAGAGATGCACAGACTAAGTTTTTAAATTAGCTCCCTTTTTTGGGGATGGCGAAACAAATCAGTATTATCTACCTGTTGCAGTGTTTTCATTTTGGAGAAATTGTCATTTGTTGTCATTGGTGTTTTATCTAATTAAAAAGTGTATTTCCCTTTCTTGTTCCTCTG
>XM_021597404.2
CTAAACTACATGAAGTGTGACAGAATATCATAAAAATAGAGCTAGGCTACAACTTCCTCAGTTAGACATCAGTGGATGTTGTTGCTGCCCAAATCACCTCCTCTCCTTCGGTCCTCCCATTTTTTCTGTCTCCTGCAAGCTGCTTTGGCTTTTCTAAATCACACAGACGTATTATTCGGCTTTACTGAAACCACTCTCGTTTAGACGATTCGGTGCTGGTGATAAGCTACACGTGATATCGTTTTATCGGTGAAAATAAAACCAAAAGTGGATTTGTTGACAATTCATCGACGTTTGCAACAAAGTAGCCGCTCGCGCAGAGGAGTTGTCAAATGTAACTTTTTTCCGTGAGTTTTTTTCAAGAGGGAACGAGAGCTGCACGCTCCAGACGCACGTTTCGTTTCAAAATAAGTTTTTACAGAAAAATAATATTCTCACTGCcccccaaaataaaaaataacagtgATTATCCGGTGGCACTCAAACGGATTAATAGCGTCTCCGGGGATGGAGTAATCCCGTTAACTTCATAGCAAGAACAAAACTGTTTGCATAGCGGAGCGGGCTCTTCCCGTCACCGTGCACGGGCAGTTTGAGCTGGATATCCCACCACAGCACTATGGGCTGCGGATTGAGGAAACTGGAAGACCCGGAGGACAGCAGCCCCGGGAAGATCTACTCCACTCTGAAGAGACCACAAGTAGAGATCAAAACCGACACCGTTTACGAGTATGTGCTACTGGATTTCAGTTTGGAAGGTAGTCGCCCCACGGTGCAGTATGTGTCCTCTCTGTGCGAGCTgtcccaggccctgcagccctaCTACACCCAGGGCTATGTCCTCACCACTCTGCATCCCATCATTCTCTCTGTTGGACGCACACGTTCCCTGCCCTTCAGCCTGCTCTACCGAGCCATCCTGGCCCGCCCACGACCCAGTAAGCAGGTGGTGTCCATGTGTCACAGTGTTCCTGTGCTGAGGGTGGAGGAGTGGCCTATCCCAGGGGAGTCCCTGACAGACGACACTGTTAGAGCACTGATCGACAGGGTGAACAGTAGTGCCAGGGGCGGAGTGAGGTTTGTGGGCTCAGTGCTCCAGCAGGCTGGAGGAGGGGGCAGTAACGGCAGGGTGCCTAGCCCCAGGAGAGGCTATcaatcccccccacacactcctCCATGTACCCCTCCTGGAGAAGGAGAACTGGAGGATCACAGCCCTACCTACAGCCCTGaCCTAAGGTTGCTGGTGTTCTTCCACTCATGGGCACCAGGTTGTGCTCCGCTGGAAGCTCTGGCCTGTCAGTACCACCAGGGGGCACTGTCCATGCGTGTGTCCAGGAAGGGTCAGGTGGTCAGCGCGCTGGAGGCCGATTGGCTGGAGCTGACAGCAGCCTACTACCGCAAAGGCTGGTCATTGGTGGACTCGTTTGTGTACTGGGACACACCCAAAGGTGAGCCCGTGCCCAGGTCTCTAGAGGGGTTGTTTGTCTATGAGGAGAGAAGCACTGCCCCTCCTGCCAACGACACCATCGTAGTGGAGCAGTGGACCGTCATCGAGGGTTCTGATGTGAAGACAGATTACGGGCCACTCCTTCACACACTGGCTGAGTTTGGCTGGCTGCTCACCTGTGTCCTGCCCACACCTATCATCCGCCATGACAGTGATGGTAATCTGGCCACCAAGCAGGTGGTGTTCCTACAGAGACCAGTCAAGACGTCTTCAGTACCACAGAGGAACCAGGCGGGGTCCATGCAGAGGGACGTGGCCACTCATTCTGTGAGTCGTGGTGTGGGCAGCCCCCGAACACACCCCACTGAGGAGCTGTCCCCCACCGCGGGGGGTATCGGGGGGTTCCCCGTCTTCGGAGGGGGGTACCCCAGCGCCCTGTCCCATCTGGAAGAGGGAGGCTTCGAGCAGGACGACGGGGCGGCAGAGGTCACATGCATGTGAACCCTGAGATTGACACATAGATAATATCTATCCCCCATCTATCCCTCTAATCTCTTCCCTAACCAAGAAGACCATAGATTAGAAAGCAAAACGTGGCACTTTTTAAGGTATTTTATTATGAAGCCATATGCACCATTTTGAGATGGTGTTATTtccttttttaaacattttgttggGAAAACCAAGCAGTCTGTGTTCACTGACATTGAGATACTTTTACTCATACCCACATTCTTCCACACATACACTTATTAGTCCTGATTCAAAAAGATCACATTGTTCACGCTGCACCTTTTCATGTGAtgagaacacagacacacacattcacacaactgTCACCAGCACAAATCAGGAAGCACAGGACACACCAGGAAGAACCTCTGTGTGCACAGGCAGACCTCTGGACTAATCTCCCTGTGACCCACAACACACCTGTTGGACAGATGTGTCCCAATGTTTTTGTTCTTCAGTCACTGCTCACGTTTCAGACAATGTTCCTGTTTTGGGAAACCTCCTCACCCGCTCATCCACCCTCCCCTTTAGAACTGCCAACACCTCTATTCAATACAACTCTCCTCATTCTGACGTGACATCACGTCTGCTCAGGCTCAAGGTGACACGGTTCAGagacacaacatatctacatcctgccaccagctcctctccctcttctcctttcccatAAACACACCCAGCAGGATGTAAACATTTATCAGGTGGACAAATAGACACGTTCGCTGTGTTGGCGGTACTGACAATATCCAGGTCAGACTTGTCTATGGGCCTGGCGGTGAGTACAGCCATATTACAAacagccctctctctttctgtgatgGTTGTGTTTAACTCGGAGTGTTTGAGTTCAGGCCTGGAGAAGCTTGTTTGTACATTCATTTCTTGGTTGAGTTCAGatgtgtttttatatatatatatacacacacacacacacacacacacacacacacagagagatagaggactgCCAAGCCACAGGGGTGCCTGGGTAAGTAGGAACGATTGGATAATATTTCTGAgatgtacacatacagtacattagagcCATTGTATTCAGACTGTCTGATTGGTGCTAAACATCTATTGTTCACTAATCTGTTCATGATGTCATCATTAGTGTATATTTCTTAAGTATTTTATAACAATTTTACCAGTTGGCATCGGATCAGTAGATATTCTGTTCCTGCACCTATTCTGTCATTGGAAATTGCTGGTAGTTTCATCATAGCCACATGGCACTGGTTCTCAGGCCTCAATTGTTTCATTCTGCTCAGTGCTGATGTAGATTCCTCTCCTAAGATCTTGAGACAAAAGCCCTAGTTTGTTCAGGAGATAGTGACAGTTGactcttttttaaatgtttgatcATGTGAAGGGCTTGTTGTATAAGAAAACAACACCATGCATCGTAATGTTAACAGGAAGTATTACTAGAGATGTACAGACTAAGTTTTTAAATGTTTGATCATGTGAAGGGCTTGTTGTATAAGAAAACATCACCATGCTGCTGTACATCGTAATGTTAACAGGAAGTATTACTAGAGATGCACAGACTAAGTTTTTAAATTAGCTCCCTTTTTTGGGGATGGCGAAACAAATCAGTATTATCTACCTGTTGCAGTGTTTTCATTTTGGAGAAATTGTCATTTGTTGTCATTGGTGTTTTATCTAATTAAAAAGTGTATTTCCCTTTCTTGTTCCTCTG

Function

symbol description
rftn2 Predicted to be located in plasma membrane. Orthologous to human RFTN2 (raftlin family member 2).

NR:

description
raftlin-2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597403.2 False 3692 mRNA 0.48 8 55741697 55779314
XM_021597404.2 True 3671 mRNA 0.48 8 55741703 55779314

Neighbor

gene id symbol gene type direction distance location
LOC110504295 LOC106586344 coding upstream 245109 55430193 ~ 55496588 (+)
LOC110520234 LOC106586346 coding upstream 330142 55405871 ~ 55411555 (+)
lcmt2 NA coding upstream 352975 55380671 ~ 55388722 (+)
LOC110520231 dbr1 coding upstream 366839 55371759 ~ 55375526 (+)
kcnh3 LOC103481844 coding upstream 386047 55157443 ~ 55355650 (+)
LOC110520236 LOC106586369 coding downstream 13045 55792359 ~ 55800630 (+)
LOC110520240 LOC106586372 coding downstream 54429 55833743 ~ 55849324 (+)
LOC118964367 NA coding downstream 62891 55842205 ~ 55842343 (+)
LOC118964369 NA coding downstream 64440 55843754 ~ 55843823 (+)
ankrd44 LOC106586375 coding downstream 77005 55856319 ~ 55890098 (+)
G275480 NA non-coding upstream 3784 55737614 ~ 55737913 (+)
G275479 NA non-coding upstream 5835 55735656 ~ 55735862 (+)
G275468 NA non-coding upstream 16449 55724949 ~ 55725248 (+)
G275461 NA non-coding upstream 26359 55714683 ~ 55715338 (+)
G275460 NA non-coding upstream 28452 55712845 ~ 55713245 (+)
G275495 NA non-coding downstream 9089 55788403 ~ 55791421 (+)
G275536 NA non-coding downstream 91384 55870698 ~ 55903415 (+)
G275544 LOC106586374 non-coding downstream 121663 55900977 ~ 55904490 (+)
G275545 NA non-coding downstream 125508 55904822 ~ 55905288 (+)
G275548 LOC106586374 non-coding downstream 130169 55909483 ~ 55910082 (+)
G274592 NA other upstream 866582 54874399 ~ 54875115 (+)
G273094 LOC106586310 other upstream 1900080 53841264 ~ 53841617 (+)
G273004 LOC106586313 other upstream 2083014 53657461 ~ 53658683 (+)
G272965 NA other upstream 2089266 53648825 ~ 53652431 (+)
G275542 LOC106586374 other downstream 120880 55900194 ~ 55900743 (+)
G275553 LOC107595854 other downstream 136015 55915329 ~ 55916133 (+)
G277296 NA other downstream 1485253 57264567 ~ 57264892 (+)
G277973 NA other downstream 2010420 57789734 ~ 57790332 (+)
G280315 NA other downstream 4273402 60052716 ~ 60054417 (+)

Expression


Co-expression Network