LOC110520238 (LOC106586370)


Basic Information

Item Value
gene id LOC110520238
gene name LOC106586370
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55779503 ~ 55821242 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597405.2
TGGAGGAATGACAACCATTTGGTAGCTCACTACTCCCAGTTCTTGTTATCCGTCACATAAGCTTGTGCATCATTTGCATCCGGGCATTCTGTCGAGATGGTCATGGCGGAGGGTACTGCAGTTCTGAGGAGGAATAGGCCTGGAACCAAGGCGAAGGATTTCTACAATTGGCCGGATGAATCCTTTGAGGAGATGGACAGCACTCTGGCTGTACAACAGTACATTCAGCAGAACATCCGGTCAGACTGCTCTAACATCGATAAGATCCTGGAGCCTCCAGAGGGACAGGACGAGGGAGTGTGGAAGTACGAGCACCTCAGGCAATTCTGTCTGGAGCTGAATGGACTAGCTGTGAAACTGCAGAGTGAGTGCCACCCAGACACCTGCACGCAGATGACTGCCACAGAGCAGTGGATCTTCCTATGTGCTGCACACAAAACCCCCAAAGAGtgTCCTGCCATTGACTACACCAGGCACACGCTGGACGGAGCTGCCTGCCTTCTCAACAGCAACAAGTATTTCCCCAGccgCGTGAGCATCAAGGAGTCCTCTGTAGCCAAGCTGGGCTCTGTGTGTCGCCGTATCTATAGGATATTCTCTCATGCCTATTTCCACCATCGTCAGATATTCGACAAGTATGAGAATGAGACGTTCCTGTGCCATCGGTTCACACGCTTCGTGATGAAGTACAACCTGATGTCCAAGGACAACCTGATCGTTCCTATCCTGGAGGAGGAGGTCCAGAACGCTTCAGCCGGGGAGAGCGAGGCCTGAGAGGAGAGCTGCTCACAGGAGACCAGACGTGTATTCAAATactgcttgattgagcttgcctgttgcAATGGAACCAAGAGAAGTCCCACATgtgcaaaccccacccatctggcactctaaagcaaatgctcaaagtatttgaaagatttcagatagtatttgaaccaatgattttTATATACACTagactgacagggggcgctgttttgAAGCCACCGCGCCCCCCATCTTGGCACCATTGTAAAAAAatgtctacaattgtttttgCTACATTTACTCTATTACAGACAGCTACATGCATAATTTGTAATTGTGTGAGCTAAaagttaaaaaaatgtaattttaaaCATCCTTAAAAGTACTAATGTTACTGGCCCCGCTACAACAATAATActtaaataaatgtaattttgtccttgaaacattcaAGTGGAATTCCTTTAATTCCTATGGactgccaatatggccgaccggtggcttcaaagcctctcattagCCAATGCATCAGCAATCCaaagtttatatacatcattgattTGAACGCAGGTCTGAAACAGCTACACACTACAGACAGGCTCTCACTACTTGCTTTAACATTTTAAGCATCTGGATTTGCTCAACCTACATAAAAACAATGTGTTGATGACAAAGGCACACACTCATGggctccctgtatataacctctgcTCTCCCATGTCCCCCTCCATCTTGTTTTCCTGGTGCTTTATATTCTCTCTGCCTTTGTTCTCTCTCGCTGAATTGTAAATGGAACCCTTgccactcctgtagatctgagaggattggtgGAAAAATGCAGACATTTCCATGCAGCCCATTGGAAGGCAAGATGAAGCTATGACTATAATGCTTCTGTATCCAATCTGCCCaaatgtacaggtgtgtgtagggTTTAGAGGCTACGGATCCATTTGTGGTTCAGAATCTCTGCTTTTGTTGCTCTGAGTACATACCTCCGTCACCATTTACCCTCCCCCCCGTCATTAAGTTATTTTGTGAGAGGAGTCTTGTCTATCTGGCCCACTTTTCAATTTTCCTTTTTTAATGAACtgaatttattttttacattttcatgATGTCTGTTAATAAAAAAAGACTGTTACCCAA
>XM_036974651.1
AGGCTGGCAATTCTGGTGACGTAGCTTTCATGCCTTGCAGTTGAGAAGAGATCATCGCAGTGATTATGGCGAGAGGGAGCCGGGGACTGAGGAAAGCGGTAGAATGTATAAAACAATTGCCGGTTACAACCAGCCGAGAAACACCTACAAGGAATGGATTGAGGCTTTCAGGAAATTCCTTCCCATGTTTGACCGGGTGCTAGTGGAGCGTCTGGCTGCGGAGACTATGTCAAAGGGGGGCATCATGTTGCCAGAGAAGGCCCAGGGCAAGGTTCTGCAGGCCACAGTGGTCGCAGTGGGACCAGGCTCCACAAACCAGGATTTCTACAATTGGCCGGATGAATCCTTTGAGGAGATGGACAGCACTCTGGCTGTACAACAGTACATTCAGCAGAACATCCGGTCAGACTGCTCTAACATCGATAAGATCCTGGAGCCTCCAGAGGGACAGGACGAGGGAGTGTGGAAGTACGAGCACCTCAGGCAATTCTGTCTGGAGCTGAATGGACTAGCTGTGAAACTGCAGAGTGAGTGCCACCCAGACACCTGCACGCAGATGACTGCCACAGAGCAGTGGATCTTCCTATGTGCTGCACACAAAACCCCCAAAGAGtgTCCTGCCATTGACTACACCAGGCACACGCTGGACGGAGCTGCCTGCCTTCTCAACAGCAACAAGTATTTCCCCAGccgCGTGAGCATCAAGGAGTCCTCTGTAGCCAAGCTGGGCTCTGTGTGTCGCCGTATCTATAGGATATTCTCTCATGCCTATTTCCACCATCGTCAGATATTCGACAAGTATGAGAATGAGACGTTCCTGTGCCATCGGTTCACACGCTTCGTGATGAAGTACAACCTGATGTCCAAGGACAACCTGATCGTTCCTATCCTGGAGGAGGAGGTCCAGAACGCTTCAGCCGGGGAGAGCGAGGCCTGAGAGGAGAGCTGCTCACAGGAGACCAGACGTGTATTCAAATactgcttgattgagcttgcctgttgcAATGGAACCAAGAGAAGTCCCACATgtgcaaaccccacccatctggcactctaaagcaaatgctcaaagtatttgaaagatttcagatagtatttgaaccaatgattttTATATACACTagactgacagggggcgctgttttgAAGCCACCGCGCCCCCCATCTTGGCACCATTGTAAAAAAatgtctacaattgtttttgCTACATTTACTCTATTACAGACAGCTACATGCATAATTTGTAATTGTGTGAGCTAAaagttaaaaaaatgtaattttaaaCATCCTTAAAAGTACTAATGTTACTGGCCCCGCTACAACAATAATActtaaataaatgtaattttgtccttgaaacattcaAGTGGAATTCCTTTAATTCCTATGGactgccaatatggccgaccggtggcttcaaagcctctcattagCCAATGCATCAGCAATCCaaagtttatatacatcattgattTGAACGCAGGTCTGAAACAGCTACACACTACAGACAGGCTCTCACTACTTGCTTTAACATTTTAAGCATCTGGATTTGCTCAACCTACATAAAAACAATGTGTTGATGACAAAGGCACACACTCATGggctccctgtatataacctctgcTCTCCCATGTCCCCCTCCATCTTGTTTTCCTGGTGCTTTATATTCTCTCTGCCTTTGTTCTCTCTCGCTGAATTGTAAATGGAACCCTTgccactcctgtagatctgagaggattggtgGAAAAATGCAGACATTTCCATGCAGCCCATTGGAAGGCAAGATGAAGCTATGACTATAATGCTTCTGTATCCAATCTGCCCaaatgtacaggtgtgtgtagggTTTAGAGGCTACGGATCCATTTGTGGTTCAGAATCTCTGCTTTTGTTGCTCTGAGTACATACCTCCGTCACCATTTACCCTCCCCCCCGTCATTAAGTTATTTTGTGAGAGGAGTCTTGTCTATCTGGCCCACTTTTCAATTTTCCTTTTTTAATGAACtgaatttattttttacattttcatgATGTCTGTTAATAAAAAAAGACTGTTACCCAA
>XM_021597406.2
CCCATGTTCCAGAACTTTCTCATGCGCCATTGGAGAGAAAGGGGGTGTTCAAAGTTGACACCTTGTGCAACATTGCTGCAAACTGCAATCACATGAGAACACATGAAACATAAATTATAATTTCTTCACAACTGTCCTGGCGAGTTCCTTCTATATGTACACCTGACTTTTTGCATTCTGTGGGGGTAACGGAATATTTTGGAACTGAAACTGTCCAGGAACTGTAAAGTGAGGACATTTGAAGACACGCATGCGTGAACCATTTCTTGATATTTCCTCACGTGGGAACTCGTTCAGTGTGTCAAAATCCACGCTCAAAGAAGTCGGTGCTCAACATTACAAGGTCTCTTACATAAATGGCTTTCAGGAAATTCCTTCCCATGTTTGACCGGGTGCTAGTGGAGCGTCTGGCTGCGGAGACTATGTCAAAGGGGGGCATCATGTTGCCAGAGAAGGCCCAGGGCAAGGTTCTGCAGGCCACAGTGGTCGCAGTGGGACCAGGCTCCACAAACCAGAAAGGGAAGCTGACACCCATGAGTGTCAAAGTTGGAGAGACGGTCCTTCTGCCAGAGTATGGAGGAACTAAAGTCGACCTGGAAGACAAGGAATACTTCCTGTTCCGTGATGCTGACATCCTTGGCAAATATGTAGAGTAAAATCTGTTTCACTGTAAAACATCCCTGTAACCCCCATCCATCCTGTTAGAGAAGATTGTTGCCTCGttcatgtgttgttgtttttttaatatgTTATTCAATTGTAAATAATTCTGATCATGTTTTGTTACAATAATAAAGTGGACTATTGAATCTGGA
>XM_036974648.1
CCTTGCAGTTGAGAAGAGATCATCGCAGTGATTATGGCGAGAGGGAGCCGGGGACTGAGGAAAGCGGTAGAATGTATAAAACAATTGCCGGTTACAACCAGCCGAGAAACACCTACAAGGAATGGATTGAGGCTTTCAGGAAATTCCTTCCCATGTTTGACCGGGTGCTAGTGGAGCGTCTGGCTGCGGAGACTATGTCAAAGGGGGGCATCATGTTGCCAGAGAAGGCCCAGGGCAAGGTTCTGCAGGCCACAGTGGTCGCAGTGGGACCAGGCTCCACAAACCAGAAAGGGAAGCTGACACCCATGAGTGTCAAAGTTGGAGAGACGGTCCTTCTGCCAGAGTATGGAGGAACTAAAGTCGACCTGGAAGACAAGGAATACTTCCTGTTCCGTGATGCTGACATCCTTGGCAAATATGTAGAGTAAAATCTGTTTCACTGTAAAACATCCCTGTAACCCCCATCCATCCTGTTAGAGAAGATTGTTGCCTCGttcatgtgttgttgtttttttaatatgTTATTCAATTGTAAATAATTCTGATCATGTTTTGTTACAATAATAAAGTGGACTATTGAATCTGGA

Function

NR:

description
10 kDa heat shock protein, mitochondrial isoform X2

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0006457 protein folding biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K04078 groES, HSPE1; chaperonin GroES

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597405.2 False 1899 mRNA 0.45 7 55779503 55788119
XM_036974651.1 False 2062 mRNA 0.46 8 55779503 55821242
XM_021597406.2 False 815 mRNA 0.44 4 55788401 55792175
XM_036974648.1 True 587 mRNA 0.46 4 55788401 55821210

Neighbor

gene id symbol gene type direction distance location
LOC110504309 plcl1 coding downstream 63718 55592364 ~ 55715785 (-)
LOC110520233 NA coding downstream 384500 55392189 ~ 55395003 (-)
crygs2 LOC106586348 coding downstream 388171 55389101 ~ 55391332 (-)
LOC110520232 LOC106586350 coding downstream 397342 55375915 ~ 55382161 (-)
armc8 armc8 coding downstream 407836 55357367 ~ 55371667 (-)
LOC110520241 LOC106586374 coding upstream 69140 55890382 ~ 55923883 (-)
LOC110520251 LOC106586357 coding upstream 162631 55983873 ~ 55985477 (-)
LOC110520250 LOC106586358 coding upstream 165861 55987103 ~ 55988048 (-)
LOC110505323 LOC106586359 coding upstream 176524 55997766 ~ 55999561 (-)
LOC110520252 LOC106586360 coding upstream 182590 56003832 ~ 56004785 (-)
G276458 NA non-coding downstream 11167 55766309 ~ 55768336 (-)
G276446 NA non-coding downstream 39747 55739422 ~ 55739756 (-)
G276445 NA non-coding downstream 40915 55738370 ~ 55738588 (-)
G276443 NA non-coding downstream 45669 55733500 ~ 55733834 (-)
G276401 NA non-coding downstream 57093 55722191 ~ 55722410 (-)
G276421 NA non-coding upstream 59765 55881007 ~ 55881558 (-)
G276434 NA non-coding upstream 112594 55933836 ~ 55934130 (-)
G276420 NA non-coding upstream 115375 55936617 ~ 55937022 (-)
G276497 NA non-coding upstream 122177 55943419 ~ 55944159 (-)
G275250 NA other downstream 368016 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 660291 55068639 ~ 55122013 (-)
G274344 LOC106586294 other downstream 1096698 54679918 ~ 54682805 (-)
G272713 LOC106586324 other downstream 2528419 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 3070687 52693956 ~ 52708816 (-)
si:dkey-91i10.3 LOC106586420 other upstream 1449540 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 1581742 57402984 ~ 57403575 (-)
G277749 LOC106586429 other upstream 1763144 57584386 ~ 57589183 (-)
G284018 NA other upstream 6893333 62714575 ~ 62715177 (-)
G286522 NA other upstream 9148307 64969549 ~ 64970755 (-)

Expression


Co-expression Network