LOC110520236 (LOC106586369)


Basic Information

Item Value
gene id LOC110520236
gene name LOC106586369
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55792359 ~ 55800630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597402.2
TTAGGGGTGGACCGGTAAATTGCCCGGATGCAAAAGGCCATGTGCATTGTTGCCTGTCTCTGAAGCGCTGTTGCACAACCGCTGTACCATTCTTTTCCACATTATACCATCCTGTCTCCTTCAGACGAGCAAATCGTGTCATCATTAAACAACAAAGATGTTGCGTCTACCCACAGTGATGAGACAGATGAGGCCAGTCAGCAGGGCCCTGGCCCCCCACCTCACCCGGGCTTACGCCAAGGACGTCAAGTTTGGAGCCGATGCTCGGGCCATGATGCTGAAGGGAGTGGATCTGCTGGCTGATGCTGTCGCTGTCACCATGGGACCGAAGggTCGCACAGTCATTATCGAGCAGAGCTGGGGCAGCCCCAAGGTGACCAAGGACGGCGTCACTGTAGCCAAGGCCATCGACCTGAAGTGCAAGTACCAGAACATTGGTGCCAAGCTGGTCCAGGACGTGGCCAACAACACGAACGAGGAAGCGGGAGATGGCACCACCACTGCCACCGTGCTGGCCAGAGCCATCGCCAAGGAGGGCTTTGACAGCATCAGTAAAGGAGCTAACCCTGTGGAGATCCGGCGTGGCGTCATGCTGGCTGTGGAGACCGTCATCAATGAGCTGAAGAGGATGTCCAAGCCAGTCACCACCCCTGAGGAGATTGCCCAGGTGGCCACCATCTCTGCTAATGGAGACGTAGAGATCGGCACCATCATCTCCAACGCCATGAAGAAAGTGGGCCGCAAGGGAGTCATCACTGTCAAGGATGGCAAAACCCTTTATGATGAGCTTGAGATCATTGAGGGGCTGAAGTTTGACCGCGGATACATCTCCCCTTACTTCATCAACACAGCCAAAGGCCAGAAGTGTGAGTTCCAGGATGCCTATGTGTTGCTGAGTGAGAAGAAAATCTCTTCTGTCCAGAGCATCGTCCCTGCCCTGGAATTGGCCAACCAGCACCGCAAACCTCTGGTCATAGTGGCCGAGGATGTGGACGGAGAGGCCCTCAGCACCCTGGTCCTCAACAGGCTGAAGGTGGGACTGCAAGTGGTGGCAGTCAAGGCCCCAGGCTTTGGAGACAACAGGAAGGCCCAGCTGCATGACATGGCCGTTGCCACCGGGGGCACTGTGTTTGGTGATGAGGCGGTGGGCATTGCTCTGGAGGACATCCAGGCCCATGACTTTGGTAAGGTTGGCGAGGTGTCTGTCACCAAGGACGACACCATGCTGCTGAAGGGGAAGGGAGACACTGCGGCCATCGAGAAGCGCCAGGCAGAAATAGTTGAGCAGCTGGAGAACACCACTAGCGACTATGAGAAGGAGAAGCTCAACGAGAGGCTGGCCAAGCTGTCTGACGGAGTGGCTGTGCTCAAGGTAGGAGGAACGAGTGATGTAGAGGTGAACGAGAAGAAGGACCGTGTGACCGACGCCCTGAATGCCACCAGGGCCGCTGTGGAGGAGGGCATTGTGCCCGGAGGTGGCTGTGCCCTGCTGCGCTCCATCCCTGCCCTTGATGCCCTCGTGCCCATTAACACTGACCAGAAGATTGGAATTGACATCATCAGACGAGCCCTGCGTGTGCCAGCCATGACCATTGCGAAGAACGCTGGTGTGGAGGGCTCTCTAGTGGTGGAGAAGATCCTTCAGGCCGCGGGGGAGATAGGATACGATGCCATGGAGGGAGAGTACGTCAACATGGTAGAGAAGGGCATCATCGACCCAACCAAGGTGGTAAGAACGGCACTGATGGACGCTGCAGGTGTTGCTTCTCTGCTCTCCACCGCCGAGTGTGTGGTCACAGAACTGCCCAAGGATGAAAAGGAGGCTGGCATGCCAGGGGGCATGGGTGGTATGGGGGGCATGGGAGGTATGGGGGGCATGGGAGGTGGCATGTTCTAAGGCTCACCTCAAAGTGCTGTTTAGACTTAATGGCAGAATGAGGCTAGGGGGCAAATTATCCCTCCAACCCCAGACAGACTGGCCATAAGTTTATTGGTGCTGCAAATGGATGAACCCTACTACTTCTGCTGATTGTCTCCCCTCCACCATCCGGTAAGAACGGACCAGCCTCCCCAGCCTTACTCCGTCCCTCTACCCACACCTGACTGAGGCTCTGACCGACTCCAGTCTGCACcgatgatcccccccccccccgcccacacAGTTTACCTCATAAACATGGCAGTCTCATCATCCATCCTCAACATGCAGAATAGTCTTGAATATCGTGCAGAATATTCCCTGTCAATTATGAAAGATACTCACCAGTGAGAATAATCCAATGCTGTTCTTGATAAATTGTCATTTAATATCAAATGGAAGTAATGAAGCCTGTTTGTGTGCACTACAGAAGTTCAAACGAGAAGGCTGACCTAAAATGGTCAAACACAGTATAGATGTAACTCAATATTGATTTACAgagttttttttagttttttttgtaaCTTTGTGGGTGAACCAGGAAAACTGAAATGAACAATGTTGGAAGGAACCATAACTGAAAAGGTTAAGTTAATTAAACAATTATTGCTGAGCatgagttttttttcttcatctctGACCTGATTTAATACTAAAATATTCTGTAACTTTAGAACTGAAAGAATAATTCGATACATTTTACTAAGAAACATGACCTTATGATTGGTTAAGAGTGCCTCGTTTACTAGTAATTTAGCGGAGGGGAAGGCTAAATAGGCATTTAGCTGATTTTAATGCACATCTGGCAAAGGGAGGGCGCAGTTTGCAGAGGTTGATTGGGTAGGTAGGTGTAGCAGTTTGGGCCAGTGACGGTCTAAGCCACAAGTTTTAATGTTAAACCCATTTGGTGTCCTCATGACCTGATTTGTACTTACTGCTCATGACATTTAGCCTACATTTTATTTGATGTGTGTTCAATAGGAGCCACAAACTACCATGCGCGCGTGTAAGCATGTGTTAAACTGCTACTctactatccccccccccctccccgtacGTTATTTCTTTGCAAACAACTGATCATTCAACGTGTTTTGTACAATGTAGacattttgtgattttttttttttatgtatttaataAAATCAAATGTTCTGAAGGAA

Function

NR:

description
60 kDa heat shock protein, mitochondrial

GO:

id name namespace
GO:0031101 fin regeneration biological_process
GO:0042026 protein refolding biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K04077 groEL, HSPD1; chaperonin GroEL

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597402.2 True 3081 mRNA 0.51 10 55792359 55800630

Neighbor

gene id symbol gene type direction distance location
rftn2 rftn2 coding upstream 13045 55741697 ~ 55779314 (+)
LOC110504295 LOC106586344 coding upstream 295771 55430193 ~ 55496588 (+)
LOC110520234 LOC106586346 coding upstream 380804 55405871 ~ 55411555 (+)
lcmt2 NA coding upstream 403637 55380671 ~ 55388722 (+)
LOC110520231 dbr1 coding upstream 417501 55371759 ~ 55375526 (+)
LOC110520240 LOC106586372 coding downstream 33113 55833743 ~ 55849324 (+)
LOC118964367 NA coding downstream 41575 55842205 ~ 55842343 (+)
LOC118964369 NA coding downstream 43124 55843754 ~ 55843823 (+)
ankrd44 LOC106586375 coding downstream 55689 55856319 ~ 55890098 (+)
LOC118962850 NA coding downstream 132933 55933563 ~ 55935062 (+)
G275495 NA non-coding upstream 938 55788403 ~ 55791421 (+)
G275500 NA non-coding upstream 23946 55768059 ~ 55768413 (+)
G275498 NA non-coding upstream 24383 55766012 ~ 55767976 (+)
G275484 NA non-coding upstream 48100 55743985 ~ 55744259 (+)
G275480 NA non-coding upstream 54446 55737614 ~ 55737913 (+)
G275536 NA non-coding downstream 70068 55870698 ~ 55903415 (+)
G275544 LOC106586374 non-coding downstream 100347 55900977 ~ 55904490 (+)
G275545 NA non-coding downstream 104192 55904822 ~ 55905288 (+)
G275548 LOC106586374 non-coding downstream 108853 55909483 ~ 55910082 (+)
G275549 NA non-coding downstream 109542 55910172 ~ 55910394 (+)
G274592 NA other upstream 917244 54874399 ~ 54875115 (+)
G273094 LOC106586310 other upstream 1950742 53841264 ~ 53841617 (+)
G273004 LOC106586313 other upstream 2133676 53657461 ~ 53658683 (+)
G272965 NA other upstream 2139928 53648825 ~ 53652431 (+)
G275542 LOC106586374 other downstream 99564 55900194 ~ 55900743 (+)
G275553 LOC107595854 other downstream 114699 55915329 ~ 55916133 (+)
G277296 NA other downstream 1463937 57264567 ~ 57264892 (+)
G277973 NA other downstream 1989104 57789734 ~ 57790332 (+)
G280315 NA other downstream 4252086 60052716 ~ 60054417 (+)

Expression


Co-expression Network