Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110520241 |
| gene name | LOC106586374 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 55890382 ~ 55923883 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036974661.1 | False | 6121 | mRNA | 0.54 | 40 | 55890382 | 55915483 |
| XM_036974659.1 | False | 7198 | mRNA | 0.54 | 44 | 55890382 | 55923882 |
| XM_036974660.1 | False | 7171 | mRNA | 0.54 | 43 | 55890382 | 55923882 |
| XM_036974652.1 | False | 7316 | mRNA | 0.54 | 46 | 55890382 | 55923883 |
| XM_036974653.1 | False | 7289 | mRNA | 0.54 | 45 | 55890382 | 55923883 |
| XM_036974654.1 | False | 7289 | mRNA | 0.54 | 45 | 55890382 | 55923883 |
| XM_036974655.1 | False | 7274 | mRNA | 0.54 | 45 | 55890382 | 55923883 |
| XM_036974656.1 | False | 7268 | mRNA | 0.54 | 46 | 55890382 | 55923883 |
| XM_036974657.1 | False | 7226 | mRNA | 0.54 | 45 | 55890382 | 55923883 |
| TU313833 | False | 1075 | lncRNA | 0.48 | 1 | 55911403 | 55912477 |
| TU313828 | True | 1785 | lncRNA | 0.46 | 2 | 55920534 | 55923859 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110520238 | LOC106586370 | coding | downstream | 69140 | 55779503 ~ 55821242 (-) |
| LOC110504309 | plcl1 | coding | downstream | 174597 | 55592364 ~ 55715785 (-) |
| LOC110520233 | NA | coding | downstream | 495379 | 55392189 ~ 55395003 (-) |
| crygs2 | LOC106586348 | coding | downstream | 499050 | 55389101 ~ 55391332 (-) |
| LOC110520232 | LOC106586350 | coding | downstream | 508221 | 55375915 ~ 55382161 (-) |
| LOC110520251 | LOC106586357 | coding | upstream | 59990 | 55983873 ~ 55985477 (-) |
| LOC110520250 | LOC106586358 | coding | upstream | 63220 | 55987103 ~ 55988048 (-) |
| LOC110505323 | LOC106586359 | coding | upstream | 73883 | 55997766 ~ 55999561 (-) |
| LOC110520252 | LOC106586360 | coding | upstream | 79949 | 56003832 ~ 56004785 (-) |
| LOC118936311 | LOC106586361 | coding | upstream | 93377 | 56017260 ~ 56018372 (-) |
| G276421 | NA | non-coding | downstream | 8824 | 55881007 ~ 55881558 (-) |
| G276458 | NA | non-coding | downstream | 122046 | 55766309 ~ 55768336 (-) |
| G276446 | NA | non-coding | downstream | 150626 | 55739422 ~ 55739756 (-) |
| G276445 | NA | non-coding | downstream | 151794 | 55738370 ~ 55738588 (-) |
| G276443 | NA | non-coding | downstream | 156548 | 55733500 ~ 55733834 (-) |
| G276434 | NA | non-coding | upstream | 9953 | 55933836 ~ 55934130 (-) |
| G276420 | NA | non-coding | upstream | 12734 | 55936617 ~ 55937022 (-) |
| G276497 | NA | non-coding | upstream | 19536 | 55943419 ~ 55944159 (-) |
| G276518 | NA | non-coding | upstream | 53577 | 55977460 ~ 55977673 (-) |
| G276661 | NA | non-coding | upstream | 256875 | 56180758 ~ 56181147 (-) |
| G275250 | NA | other | downstream | 478895 | 55410143 ~ 55411487 (-) |
| LOC110520227 | plekhm3 | other | downstream | 771170 | 55068639 ~ 55122013 (-) |
| G274344 | LOC106586294 | other | downstream | 1207577 | 54679918 ~ 54682805 (-) |
| G272713 | LOC106586324 | other | downstream | 2639298 | 53249926 ~ 53251084 (-) |
| LOC110520182 | NA | other | downstream | 3181566 | 52693956 ~ 52708816 (-) |
| si:dkey-91i10.3 | LOC106586420 | other | upstream | 1346899 | 57270782 ~ 57297762 (-) |
| G277673 | LOC106586423 | other | upstream | 1479101 | 57402984 ~ 57403575 (-) |
| G277749 | LOC106586429 | other | upstream | 1660503 | 57584386 ~ 57589183 (-) |
| G284018 | NA | other | upstream | 6790692 | 62714575 ~ 62715177 (-) |
| G286522 | NA | other | upstream | 9045666 | 64969549 ~ 64970755 (-) |
