LOC118962850


Basic Information

Item Value
gene id LOC118962850
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55933563 ~ 55935062 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005050118.1
taggctaccctgccaccccataaaGTGTAAAGGAGGGGAAATAACTCACACCATGCAGCAGGACACCTTCAGCTGTGGGGTCTTTATAATGCAGGTTTGATAGTTATATTTTCAATAATGAATGGTTAGCTGTTATGTGACAATTaggtaaaaaaaactattttattttTTGGTGTAGATGGCCAAGGAAGTTGCACAGAACTTCCCCAACATCCCCTCCCAAATTCATATGGAACCTTCAAAAACATATGGAGCAACTGCGAAAAGAAATGGCTGAGGATATTCAAAAAATGTCTGAGTTCAACAAAGCCAACAACTGCTTCATGTGTGCCACTGATAAAGAACCTGGATATGGCCCAAAGACTGACTGGGTTAATCTTTTGACAACAGTGATGGCATATTGAATGTTTGCATGCCAACGGTGGTTCCATGTGCTGTAACTAGGAATGAAGACAAAACAGTTCAACAGAGTAAAGAACACAAACTGGAAGTACagtctttgttgttgaaaatgtatgctataccccatccacactgaagaggctctgaaatgtacatcaaccagggataaagagaaagTTAACACTGTGAAATGTTTCATACTTATTTGAAGTTAAGTGTCTGTTGACATGTTGGAAAGACTAAAGGTCTACAATTTCTGTTTAATTTGTCAATATTATATTTTTATTAATTGCTTTACTGGCCACCATTACCATGGTTacatgttcagtatatgtattgaccAGCCTACCTCactagctcactctccatccctgctttggacaattaatagcatGACTCTCGTACTTTGCTCTTTTCCTTTATAGTTGATATTAACGATGAAAGGAgatattatctgtctctctcctattgttGTTAGCTGTTAAATACtgtggaaaaataaaaaaaactgggaAAATAAGTACTTAACTACCAATTTGTATAGATAAATATTAAAGAAAAGGGtaaacacaacactggactgaCCCCCCTAATTATCAAACTAATATTAATGTACAACAATATAGAAGAGACATACGAGGTTATGCATTATGGGTGTATATCCACTGCACGCTTCTTAGGTGTGTAATTGatatgaccaaggagctattgataTTTAAAACTGAAAAATGTACATTAAACCGCGTTATTGTAcagtacacaaacaagtgtgcaataCAGAAGGGTACATTCTGCACCACGTTTGAAGtaagtaggtcacatgaccaaggagctatttaAATTTGGAAAAATTCATGTAAAATGAGATGAAAATGGAAAATGGactaactaaagg

Function

NR:

description
uncharacterized protein LOC110503783

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005050118.1 True 1297 mRNA 0.36 3 55933563 55935062

Neighbor

gene id symbol gene type direction distance location
ankrd44 LOC106586375 coding upstream 43465 55856319 ~ 55890098 (+)
LOC110520240 LOC106586372 coding upstream 84239 55833743 ~ 55849324 (+)
LOC118964369 NA coding upstream 89740 55843754 ~ 55843823 (+)
LOC118964367 NA coding upstream 91220 55842205 ~ 55842343 (+)
LOC110520236 LOC106586369 coding upstream 132933 55792359 ~ 55800630 (+)
si:dkey-57a22.11 LOC106586378 coding downstream 7245 55942307 ~ 55948120 (+)
LOC110520246 LOC106586379 coding downstream 13531 55948593 ~ 55953872 (+)
LOC110504321 LOC106586380 coding downstream 22269 55957331 ~ 55961495 (+)
LOC110505308 LOC106586381 coding downstream 27733 55962795 ~ 55964012 (+)
LOC110520248 LOC106586383 coding downstream 31030 55966092 ~ 55968048 (+)
G275559 NA non-coding upstream 13193 55919833 ~ 55920370 (+)
G275556 NA non-coding upstream 14979 55918061 ~ 55918584 (+)
G275555 NA non-coding upstream 16015 55917315 ~ 55917548 (+)
G275553 LOC107595854 non-coding upstream 17430 55915329 ~ 55916133 (+)
G275554 NA non-coding upstream 18671 55914292 ~ 55914892 (+)
G275598 NA non-coding downstream 73377 56008439 ~ 56011288 (+)
LOC110504343 LOC106586387 non-coding downstream 205192 56139812 ~ 56289186 (+)
G275716 NA non-coding downstream 278093 56213155 ~ 56213389 (+)
G275719 NA non-coding downstream 282256 56217318 ~ 56217543 (+)
G275542 LOC106586374 other upstream 32820 55900194 ~ 55900743 (+)
LOC110520231 dbr1 other upstream 558037 55371759 ~ 55375526 (+)
G274592 NA other upstream 1058448 54874399 ~ 54875115 (+)
G273094 LOC106586310 other upstream 2091946 53841264 ~ 53841617 (+)
G277296 NA other downstream 1329505 57264567 ~ 57264892 (+)
G277973 NA other downstream 1854672 57789734 ~ 57790332 (+)
G280315 NA other downstream 4117654 60052716 ~ 60054417 (+)
G281141 NA other downstream 4352326 60287388 ~ 60303967 (+)
G281591 LOC106586456 other downstream 4805177 60740239 ~ 60757350 (+)

Expression


Co-expression Network