LOC110520246 (LOC106586379)


Basic Information

Item Value
gene id LOC110520246
gene name LOC106586379
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55948593 ~ 55953872 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597418.2
GTGGTTGTCTTTCTGCTCCCCTCGGTCTCTACTGTACACAGCCTTTCCACAAGCAGGTGTCCCCTGAAGCGGCTACCGTTTGCAGTGTGTCTTTTGGTTGGTTTATTTACATGAAACACATTTGTGATTTTGTGCTACTCTGACATTTGGAGTAGTACTGCAGTTTTTGGGTGTAACCATTGCTGATAATTCTGCATCGTGTGGTAAGTACAGATTGCTTTACAACATGAATGTGTGTCTCTGTATTAAAAATATGACCAGCTGTAATGTTATATGGATTTAGATAGCCAATTTGATCATGTAACTCAGATTTGAATAAGCACCCATTTTACCAGGCACATGCTACATAAAATGTTATGTAAATCAACAGTGACCTATTTAGGTCAACATCTCATTTTGGAGACTAGTTGTGGGAAAAGGTTGTGAGGCCAAATCTTTGTCAGACAAAGTCTAGACCTACTTCTAATCGCCTTGCTTTTGCCTTGCTTAAGCACTTCAGCCTGCACAATAATCGTCAGTGATTAAAGGTTTAGTAAAAACATATTTGTCTTCTGCTGGATGTGAGTTTAATGGCTTGTATCACATTTCCTGGACCCTGTCTAGGGCCAGAGAGGTGCCAGGTTCAAGACTACTCTGCAGTCTGCACTATGTCTTATGTCTCATATACTATGTCTTGTATATGAGCCCCAGCTGAGGTCAGCGTGGATACGCAAACAGACATGCAGTATCATACTATATCATCACCTGTTGATTTCTTTCCATCTCCATCCTTTATCTACAATGTAACTTCCCTTCCTCCAATTTCTTACCCTGGTCCAAGATCGGTTTGTGCTGCCATGCCAACTCCTACGGTCATTGTCAAGTACTTTGACGTTATATTTGCAAACCTAGTTTTGTGTAGGCTACAGGACCCCCAAGGAGTTATCCCTCTGCATGAGTAGCGCTATCTCAGAGAAATGGAGACAAGGCGACTGAGAAGAGACATTGAAGCCCTTCTGGGAGATTACATTGGTCAGAAACTGAGAGAGAATGGCTTTGACCCCAAGGGGAAAGGATCCACTAGCATGCTGGATGACCTGGCCCATTATGACTTGGCCATAAGTGTTGCCCTTTGGTGGCTAGAGAAAGAGGAGCGACATGATGTGATGGACAGAGACATTGTTGGAGTGGGCAGCCCAGGTTATAATGACCAGTACCCCAACCACCTGGAGAGAGAAGCCATGATCCTTTCTTCCTTCGCTGGGATGATCCTGAATAGCTTGCCTGTAAAAGACATTCTTGCCCTCTACACCACCAAACCGTCTGCCGCTTATCCCCACCAGCACTCCAAGAGCGCCATTGTTCATCCCTTCACCTTGTCCTATCACCCGTTTGCCATGCTGGGCTCATTCAAGGCCGTGGACCACTCCAGAAAGCAcaCCCAGAATTTGAAGCGATGGCTATCTGTGCAGGGTAAACGAGGTGCTGCCCCTGATGGACGGAGGGCCTTGGTGCAGTCCTCCTCATCCACATCTAACTCCTTTCTCTGTGACAGTGGTGAGTCCTTGAAAGAACAAGCAGAGCATTATGAAGTACCACAATAATCTCTACAGGATTAAGCAAAGTCCTTTCCTCTTCTGTGTTACTACAccattattatattgttattacaTGGTTATTACAGGGTTATTCCTGTGTTATTACACTGGGTGAAATTTGTGACGTCCCTGTTATGAGCCTGCTACTATGAGCCTGCTACTACTGGGCCTTCACATTCAAGGAACCCTGGCCAATAGTAAGTATCAATCCTCCAGTGTGTTATCATGTCACTAGGGGTTTCGTCTATATTAGGTTGTAGCTCAGACCATGTCCATCTATAAGCAATACAAATGTTTGACTACATCAGACATTACTGTACACACTTTACTGTACAATAAACCATTCACTGTCTGTAACaaagttgcctagttaaataaaggttcaattaaaaaatacaTATGTATATCAGTTATGTGACAATCAGGCATGTAGTGTTTAAGTGCTAATTATGGGGGAATTCTGACCCGAGTTAAGCGCTCCTAAATGGAATGTATTTTTtatgcatttttttttctctATGCATATTCTGACCTTGAGAATAGCATGCCAATCACCCGCTATTCGTTTGGGGTGGAGATCAAAGAGAGGAAGTTGTgtcaacatacagtggggcaaaaaagtat
>TU312811
CCAGCTGTAATGTTATATGGATTTAGATAGCCAATTTGATCATGTAACTCAGATTTGAATAAGCACCCATTTTACCAGGCACATGCTACATAAAATGTTATGTAAATCAACAGTGACCTATTTAGGTCAACATCTCATTTTGGAGACTAGTTGTGGGAAAAGGTTGTGAGGCCAAATCTTTGTCAGACAAAGTCTAGACCTACTTCTAATCGCCTTGCTTTTGCCTTGCTTAAGCACTTCAGCCTGCACAATAATCGTCAGTGATTAAAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597418.2 False 2201 mRNA 0.43 8 55948593 55953872
TU312811 True 271 lncRNA 0.38 1 55948850 55949120

Neighbor

gene id symbol gene type direction distance location
si:dkey-57a22.11 LOC106586378 coding upstream 473 55942307 ~ 55948120 (+)
LOC118962850 NA coding upstream 13531 55933563 ~ 55935062 (+)
ankrd44 LOC106586375 coding upstream 58495 55856319 ~ 55890098 (+)
LOC110520240 LOC106586372 coding upstream 99269 55833743 ~ 55849324 (+)
LOC110504321 LOC106586380 coding downstream 3459 55957331 ~ 55961495 (+)
LOC110505308 LOC106586381 coding downstream 8923 55962795 ~ 55964012 (+)
LOC110520248 LOC106586383 coding downstream 12220 55966092 ~ 55968048 (+)
LOC110520247 LOC106586382 coding downstream 14317 55968189 ~ 55970943 (+)
LOC110505314 LOC106586355 coding downstream 19823 55973695 ~ 55974792 (+)
G275559 NA non-coding upstream 28223 55919833 ~ 55920370 (+)
G275556 NA non-coding upstream 30009 55918061 ~ 55918584 (+)
G275555 NA non-coding upstream 31045 55917315 ~ 55917548 (+)
G275553 LOC107595854 non-coding upstream 32460 55915329 ~ 55916133 (+)
G275554 NA non-coding upstream 33701 55914292 ~ 55914892 (+)
G275598 NA non-coding downstream 54567 56008439 ~ 56011288 (+)
LOC110504343 LOC106586387 non-coding downstream 186382 56139812 ~ 56289186 (+)
G275716 NA non-coding downstream 259283 56213155 ~ 56213389 (+)
G275719 NA non-coding downstream 263446 56217318 ~ 56217543 (+)
G275720 NA non-coding downstream 263781 56217653 ~ 56218376 (+)
G275542 LOC106586374 other upstream 47850 55900194 ~ 55900743 (+)
LOC110520231 dbr1 other upstream 573067 55371759 ~ 55375526 (+)
G274592 NA other upstream 1073478 54874399 ~ 54875115 (+)
G273094 LOC106586310 other upstream 2106976 53841264 ~ 53841617 (+)
G277296 NA other downstream 1310695 57264567 ~ 57264892 (+)
G277973 NA other downstream 1835862 57789734 ~ 57790332 (+)
G280315 NA other downstream 4098844 60052716 ~ 60054417 (+)
G281141 NA other downstream 4333516 60287388 ~ 60303967 (+)
G281591 LOC106586456 other downstream 4786367 60740239 ~ 60757350 (+)
LOC118964369 NA coding upstream 105027 55843754 ~ 55843823 (+)

Expression


Co-expression Network