LOC110504321 (LOC106586380)


Basic Information

Item Value
gene id LOC110504321
gene name LOC106586380
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55957331 ~ 55961495 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964987.1
ATGAGTAAGATAACTTTCTACGAGGACAGCAACTTCCAGGGGCGCTCTTATGAGTGCGATGCAGACTGCGCTGACATGCACCCCCATTTCAGCCGCTGTAACTCCATCAAGGTAGATAGCGGCTGCTGGGTGCTGTACGAGCGTCCCAACTACACAGGCTATCAGTACGTGCTGACCAGAGGGGAGTACCCAGAGTACCAGCACTGGATGGGATACAATGACAGCATCCGCTCCTGCCGTACCTTCTCCTATACTAGCGGAGGCCCATACCGCATGCGCATCTATGAACGCCCCAACTTCCAGGGCCAGACGATGGAGTTCGCCGAGGACTGTGAGTCTGTCCAGGAACGCTTCCGCAGCCGTGATGTCTACTCCTGTAACGTTCTGGAGGGCTACTGGACCCTCTACGAACACCCCAACTACCGCGGCCGCCAGTACTTCATGAGGCCTGGAGAGTACAGGAAGTTTAGTGACTGGGGCGCCACATGTGCCACCACCGGCTCCTTCCGTAGGATCACCGAGTTTTAGATAAGAACACCTTCTCTGCCTCCCTAAACGCAGCTCGTCTCTAGTTGGCACTGGCTTGTCAATAGAAGAGTATGCCTATTCTAACACACAGGACTGTGTCAATATATTTTATGAATTTGAAATAGAT

Function

NR:

description
gamma-crystallin M2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964987.1 True 655 mRNA 0.53 3 55957331 55961495

Neighbor

gene id symbol gene type direction distance location
LOC110520246 LOC106586379 coding upstream 3459 55948593 ~ 55953872 (+)
si:dkey-57a22.11 LOC106586378 coding upstream 9211 55942307 ~ 55948120 (+)
LOC118962850 NA coding upstream 22269 55933563 ~ 55935062 (+)
ankrd44 LOC106586375 coding upstream 67233 55856319 ~ 55890098 (+)
LOC118964369 NA coding upstream 113508 55843754 ~ 55843823 (+)
LOC110505308 LOC106586381 coding downstream 1300 55962795 ~ 55964012 (+)
LOC110520248 LOC106586383 coding downstream 4597 55966092 ~ 55968048 (+)
LOC110520247 LOC106586382 coding downstream 6694 55968189 ~ 55970943 (+)
LOC110505314 LOC106586355 coding downstream 12200 55973695 ~ 55974792 (+)
LOC110520249 LOC106582319 coding downstream 18857 55980352 ~ 55981350 (+)
G275559 NA non-coding upstream 36961 55919833 ~ 55920370 (+)
G275556 NA non-coding upstream 38747 55918061 ~ 55918584 (+)
G275555 NA non-coding upstream 39783 55917315 ~ 55917548 (+)
G275553 LOC107595854 non-coding upstream 41198 55915329 ~ 55916133 (+)
G275598 NA non-coding downstream 46944 56008439 ~ 56011288 (+)
LOC110504343 LOC106586387 non-coding downstream 178759 56139812 ~ 56289186 (+)
G275716 NA non-coding downstream 251660 56213155 ~ 56213389 (+)
G275719 NA non-coding downstream 255823 56217318 ~ 56217543 (+)
G275720 NA non-coding downstream 256158 56217653 ~ 56218376 (+)
G275542 LOC106586374 other upstream 56588 55900194 ~ 55900743 (+)
LOC110520231 dbr1 other upstream 581805 55371759 ~ 55375526 (+)
G274592 NA other upstream 1082216 54874399 ~ 54875115 (+)
G273094 LOC106586310 other upstream 2115714 53841264 ~ 53841617 (+)
G277296 NA other downstream 1303072 57264567 ~ 57264892 (+)
G277973 NA other downstream 1828239 57789734 ~ 57790332 (+)
G280315 NA other downstream 4091221 60052716 ~ 60054417 (+)
G281141 NA other downstream 4325893 60287388 ~ 60303967 (+)
G281591 LOC106586456 other downstream 4778744 60740239 ~ 60757350 (+)

Expression


Co-expression Network