LOC110520247 (LOC106586382)


Basic Information

Item Value
gene id LOC110520247
gene name LOC106586382
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55968189 ~ 55970943 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597419.2
CTTACTGATATATTTGTCAGGGACCATGCAAAACAATTGTTTCACTGGATTTTAGCTACCTAGCTTATTTTCATTTGCAGCCCCTATGCGATGTAACCTTGACTTcatgaaacagtgaattataaagcAAAGGTGTCCATGCATGGCTTCTCAATATCGAGGACAGGTAAGACCATGTTGGTAAAGGTAGATCTATGTCTTATGTGGGCCATGTTCATCACTCTGATTAGATGCAGTATACAACACATATGCTACTGTAAATGGATAATTACCATGTATTTATTTGACAAAGATTGAATTATATGAATAAACTAGGCTAAGTGGATTCTTAAAAAGTTCAAAGAAATACTACTATTTTTTCATTTCAGGTCCGTGTATGGGCACTCTAACATCTAGCTGGCTACCACTGTATAATGAATATGGTGTTGATAGGTTTTGCTGATGCTGTGCAGTGTACTGTATCAGTCTGGTATACAGTAGTGTTTTCTGAGAATTGTGATGAATATGGGGGAGAGAACAATAACTGGTTACGCGCTGCCATCTATACAGAAACAGATTTTTTTCACCCACCTCCACCATTGACACACTATGACTGAGGGATATATTTGAATGACAATACTTTGTGCTGTGCAATCACACAGCTGCcctgtgtgtgtgatttttttttataaaagacAGTGCTGGATTGAGGGACATTGAGCATTGAGCCGTCACCCCCATCCACCGCCAACATGACTATGGGAAAGATCATCTTTTACGAAGACAGGAACTTCCAGGGTCACTCTCATGAGTGCAGCAGCGACTGTGCCGACCTGCACTCCTACTTCAACCGCTGCAACTCCATCAAAGTTGAGAGCGGATGCTTCATGGTCTACGAGCGCCCCAACTACATGGGAAACCAGTACTttgtgaggaggggagagtacTCAGATAACCAGCAAATGATTGGCATCAATGACTGCATCAGGTCCTGCCGTATGATCCCCATGCACCGTGGCCAGTACAGAATGAGAATGTACGATCGTCCTGACATGGGCGGCCAGATGAATGAGCTGAGCGACGACTGCCCCAACGTCCAGGACCGTTTCCGTATGTCCGACATCAACTCCTGCAACGTGATGGACGGCCACTGGCTGATGTACGACCAGCCCAACTACAAGGGCAGGCAGTACTATGTGAGGCCCGGCGAGTACAGGAGGTTCAACGACTGGGGAGGCTTGAGCCCCAAGATCGGCTCCCTCAGAAGGATCACCGACTTCAACTGAACGAGAGCTCCAATTTGAACTATCAACTGTCACTCTTGTCCACAATAAACTTTGATTCGTAATCAAAAAAACTTTTATGTCTTCCACTTCTCTTTGAGAAGGTTATTGGTATCTTCTCAGAACTCAACCCCATTGCTAGAAACCCTCACTGATAATTCATGCAAAGTTTGTTGA

Function

NR:

description
gamma-crystallin M2-like

GO: NA

KEGG:

id description
K23483 CRYG; gamma-crystallin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597419.2 True 1439 mRNA 0.44 3 55968189 55970943

Neighbor

gene id symbol gene type direction distance location
LOC110520248 LOC106586383 coding upstream 141 55966092 ~ 55968048 (+)
LOC110505308 LOC106586381 coding upstream 4177 55962795 ~ 55964012 (+)
LOC110504321 LOC106586380 coding upstream 6694 55957331 ~ 55961495 (+)
LOC110520246 LOC106586379 coding upstream 14317 55948593 ~ 55953872 (+)
si:dkey-57a22.11 LOC106586378 coding upstream 20069 55942307 ~ 55948120 (+)
LOC110505314 LOC106586355 coding downstream 2752 55973695 ~ 55974792 (+)
LOC110520249 LOC106582319 coding downstream 9409 55980352 ~ 55981350 (+)
LOC118944547 NA coding downstream 57158 56028101 ~ 56031077 (+)
LOC110505326 LOC106586362 coding downstream 91392 56062335 ~ 56062973 (+)
LOC110505333 LOC106586363 coding downstream 106241 56077184 ~ 56079296 (+)
G275559 NA non-coding upstream 47819 55919833 ~ 55920370 (+)
G275556 NA non-coding upstream 49605 55918061 ~ 55918584 (+)
G275555 NA non-coding upstream 50641 55917315 ~ 55917548 (+)
G275553 LOC107595854 non-coding upstream 52056 55915329 ~ 55916133 (+)
G275598 NA non-coding downstream 37496 56008439 ~ 56011288 (+)
LOC110504343 LOC106586387 non-coding downstream 169311 56139812 ~ 56289186 (+)
G275716 NA non-coding downstream 242212 56213155 ~ 56213389 (+)
G275719 NA non-coding downstream 246375 56217318 ~ 56217543 (+)
G275720 NA non-coding downstream 246710 56217653 ~ 56218376 (+)
G275542 LOC106586374 other upstream 67446 55900194 ~ 55900743 (+)
LOC110520231 dbr1 other upstream 592663 55371759 ~ 55375526 (+)
G274592 NA other upstream 1093074 54874399 ~ 54875115 (+)
G273094 LOC106586310 other upstream 2126572 53841264 ~ 53841617 (+)
G277296 NA other downstream 1293624 57264567 ~ 57264892 (+)
G277973 NA other downstream 1818791 57789734 ~ 57790332 (+)
G280315 NA other downstream 4081773 60052716 ~ 60054417 (+)
G281141 NA other downstream 4316445 60287388 ~ 60303967 (+)
G281591 LOC106586456 other downstream 4769296 60740239 ~ 60757350 (+)

Expression


Co-expression Network