LOC110520251 (LOC106586357)


Basic Information

Item Value
gene id LOC110520251
gene name LOC106586357
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55983873 ~ 55985477 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597425.2
ACTGAGACCACAGGTGGCACGAGCACAAGTTTGGCTGGAAGTATTCCAAAACCTGACCACTGAAACAGTACTGAAACCACCAGGCAAGGATATAAAAGGACCATGGCTCGCTTAGTCAGTGTTGCAGTGTGATCACATTTACCTAACACAATGGGAAAGATAATCTTCTACGAGGACAAGAACTTCCAGGGTCGCTCCTATGAGTGCAACACCGACTGTGCCGACCTGCACACCCATTTCAGCCACTGTAACTCCATCCAAGTGGAGAGTGGTAGCTGGATGGTCTATGAGCGGCCAAACTACATGGGCTACCAGTACTTCCTGAGAAGAGGCGAGTATCCCGACTACCAGCGCTGGATGGGCTTTAATGATTGCGTGAAATCCTGCCGGATGATCCCTCAAAACCAGGGAGCTCACAAGATGAGAATCTACGAGCGCTCTGACTTTGGCGGTCAGATGCTGGAGTTTGCCGATGACTGCCCCTCACTCTACGATCGATTCCATTACAATGATATCAACTCTTGCAATGTTATGGAGGGGTATTGGCTTTTCTATGAGCATCCCAACTACAGAGGCAGGCAGTATCTCCTGAGGCCTGGCGAGTACAGGAGATACAGTGACTGGGGAGCCATCAATTCCAAGATTGGCTCCATCAGACGTGTTGTTGCTCACCCAAACTGAGAGGCAATACATGAAACTGAGCCTAACATTGAAATTAATAAAAGTTAGGTCCA
>XM_036964471.1
GGTCAACTGAGACCACAGGTGGCACGAGCACAAGTTTGGCTGGAAGTATTCCAAAACCTGACCACTGAAACAGTACTGAAACCACCAGGATATAAAAGGACCATGGCTCGCTTAGTCAGTGTTGCAGTGTGATCACATTTACCTAACACAATGGGAAAGATAATCTTCTACGAGGACAAGAACTTCCAGGGTCGCTCCTATGAGTGCAACACCGACTGTGCCGACCTGCACACCCATTTCAGCCACTGTAACTCCATCCAAGTGGAGAGTGGTAGCTGGATGGTCTATGAGCGGCCAAACTACATGGGCTACCAGTACTTCCTGAGAAGAGGCGAGTATCCCGACTACCAGCGCTGGATGGGCTTTAATGATTGCGTGAAATCCTGCCGGATGATCCCTCAAAACCAGGGAGCTCACAAGATGAGAATCTACGAGCGCTCTGACTTTGGCGGTCAGATGCTGGAGTTTGCCGATGACTGCCCCTCACTCTACGATCGATTCCATTACAATGATATCAACTCTTGCAATGTTATGGAGGGGTATTGGCTTTTCTATGAGCATCCCAACTACAGAGGCAGGCAGTATCTCCTGAGGCCTGGCGAGTACAGGAGATACAGTGACTGGGGAGCCATCAATTCCAAGATTGGCTCCATCAGACGTGTTGTTGCTCACCCAAACTGAGAGGCAATACATGAAACTGAGCCTAACATTGAAATTAATAAAAGTTAGGTCCA

Function

NR:

description
beta-crystallin S-1-like

GO: NA

KEGG:

id description
K23483 CRYG; gamma-crystallin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597425.2 False 734 mRNA 0.49 4 55983873 55985472
XM_036964471.1 True 734 mRNA 0.49 4 55983873 55985477

Neighbor

gene id symbol gene type direction distance location
LOC110520241 LOC106586374 coding downstream 59990 55890382 ~ 55923883 (-)
LOC110520238 LOC106586370 coding downstream 162631 55779503 ~ 55821242 (-)
LOC110504309 plcl1 coding downstream 268088 55592364 ~ 55715785 (-)
LOC110520233 NA coding downstream 588870 55392189 ~ 55395003 (-)
crygs2 LOC106586348 coding downstream 592541 55389101 ~ 55391332 (-)
LOC110520250 LOC106586358 coding upstream 1626 55987103 ~ 55988048 (-)
LOC110505323 LOC106586359 coding upstream 12289 55997766 ~ 55999561 (-)
LOC110520252 LOC106586360 coding upstream 18355 56003832 ~ 56004785 (-)
LOC118936311 LOC106586361 coding upstream 31783 56017260 ~ 56018372 (-)
LOC110520253 LOC106586384 coding upstream 55283 56040760 ~ 56041698 (-)
G276518 NA non-coding downstream 6200 55977460 ~ 55977673 (-)
G276497 NA non-coding downstream 39714 55943419 ~ 55944159 (-)
G276420 NA non-coding downstream 46851 55936617 ~ 55937022 (-)
G276434 NA non-coding downstream 49743 55933836 ~ 55934130 (-)
G276661 NA non-coding upstream 195281 56180758 ~ 56181147 (-)
G276664 NA non-coding upstream 200675 56186152 ~ 56186362 (-)
G276675 LOC106586387 non-coding upstream 214696 56200173 ~ 56200414 (-)
G276689 NA non-coding upstream 231761 56217238 ~ 56217453 (-)
G276722 NA non-coding upstream 286874 56272351 ~ 56361440 (-)
G275250 NA other downstream 572386 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 864661 55068639 ~ 55122013 (-)
G274344 LOC106586294 other downstream 1301068 54679918 ~ 54682805 (-)
G272713 LOC106586324 other downstream 2732789 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 3275057 52693956 ~ 52708816 (-)
si:dkey-91i10.3 LOC106586420 other upstream 1285305 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 1417507 57402984 ~ 57403575 (-)
G277749 LOC106586429 other upstream 1598909 57584386 ~ 57589183 (-)
G284018 NA other upstream 6729098 62714575 ~ 62715177 (-)
G286522 NA other upstream 8984072 64969549 ~ 64970755 (-)

Expression


Co-expression Network