LOC110520250 (LOC106586358)


Basic Information

Item Value
gene id LOC110520250
gene name LOC106586358
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55987103 ~ 55988048 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597424.2
TGGAGCCACATATTCTTTGGCTGTCGGCTCAAGTATAAAAGCGATAGGGGAACATACAGAAAATTGTACAATCCTGAGACCAATACAGTAACCGCAACCATGTCTATGGGAAAGATCATCTTTTACGAGGACAGGAACTTCCAGGGTCGTTCCTATGAGACCTCCAGCGACTGCCCTGAGCTGACCTCCTACCTGAGCAGGTGCAACTCCTGCAGGGTTGAAAGCGGCTGCTTCATGGTCTATGATCATTCCAACTTCATGGGAAACCAGTACTttgtgaggaggggagagtatgGTGACTACCAGCGTATGGGCATGAACGATTGCATCAGGTCTTGCCGTAACATCCCCATGCACAGAGGAAACTTTAGGATGAGGATGTACGAGAAGGAGAACTTCGGAGGTCAGATGCACGAGCTGAGCGATGACTGTGAGTCCATGACCGATCGTTTCCGCATGAACGACATGCAGTCCTGCAATGTGATGGACGGCCACTGGCTGATGTACGAGCAGCCCAACTACAGAGGCAGGCAGATGTACATGAGGCCTGGAGAGTACAGGAACATGAGAGATTTGAGCATGCACATGGGCTCCAACCCCATGAGGGTCAACAGCATGAGGCGTATCATGGATTCCTGTTATTAAACGCACCAATGTCTAAAATTTGAGTATAAATAAAATCACTTACCTTTTAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597424.2 True 696 mRNA 0.48 3 55987103 55988048

Neighbor

gene id symbol gene type direction distance location
LOC110520251 LOC106586357 coding downstream 1626 55983873 ~ 55985477 (-)
LOC110520241 LOC106586374 coding downstream 63220 55890382 ~ 55923883 (-)
LOC110520238 LOC106586370 coding downstream 165861 55779503 ~ 55821242 (-)
LOC110504309 plcl1 coding downstream 271318 55592364 ~ 55715785 (-)
LOC110520233 NA coding downstream 592100 55392189 ~ 55395003 (-)
LOC110505323 LOC106586359 coding upstream 9718 55997766 ~ 55999561 (-)
LOC110520252 LOC106586360 coding upstream 15784 56003832 ~ 56004785 (-)
LOC118936311 LOC106586361 coding upstream 29212 56017260 ~ 56018372 (-)
LOC110520253 LOC106586384 coding upstream 52712 56040760 ~ 56041698 (-)
LOC110520254 LOC106586385 coding upstream 59763 56047811 ~ 56049145 (-)
G276518 NA non-coding downstream 9430 55977460 ~ 55977673 (-)
G276497 NA non-coding downstream 42944 55943419 ~ 55944159 (-)
G276420 NA non-coding downstream 50081 55936617 ~ 55937022 (-)
G276434 NA non-coding downstream 52973 55933836 ~ 55934130 (-)
G276661 NA non-coding upstream 192710 56180758 ~ 56181147 (-)
G276664 NA non-coding upstream 198104 56186152 ~ 56186362 (-)
G276675 LOC106586387 non-coding upstream 212125 56200173 ~ 56200414 (-)
G276689 NA non-coding upstream 229190 56217238 ~ 56217453 (-)
G276722 NA non-coding upstream 284303 56272351 ~ 56361440 (-)
G275250 NA other downstream 575616 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 867891 55068639 ~ 55122013 (-)
G274344 LOC106586294 other downstream 1304298 54679918 ~ 54682805 (-)
G272713 LOC106586324 other downstream 2736019 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 3278287 52693956 ~ 52708816 (-)
si:dkey-91i10.3 LOC106586420 other upstream 1282734 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 1414936 57402984 ~ 57403575 (-)
G277749 LOC106586429 other upstream 1596338 57584386 ~ 57589183 (-)
G284018 NA other upstream 6726527 62714575 ~ 62715177 (-)
G286522 NA other upstream 8981501 64969549 ~ 64970755 (-)

Expression


Co-expression Network