LOC110505323 (LOC106586359)


Basic Information

Item Value
gene id LOC110505323
gene name LOC106586359
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55997766 ~ 55999561 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021584491.2
aaatttgagagaaatgcgtttcttgtgcatatggaacatttctgggatattttattttaactcatgaaacatgggaccaaaacttaatgttgggtttatatttttgttcagtaatacTTCCAGGGACACTTTAATCTAAATGACCTTCAACATTGCTTTTAAGGCAGAAAATTCAAATTTTGCCCCCCGTTTGACTGAACATAATAACCCTTTCCCGTCTGTGGTGACAAAGAGTTGGAGCAACCATAGCAAAGCATGCAGCTGACTCATGTGTTTAATACAATGGAACCAGAGATTCGTTGGGTGTCACATCAGGTATAAAACAAGCTGCAGACTAGCACAGCTGTAGCATTGCTCAAAATAACCGTAAACATGCACGGAAAGATCATCTTCTTCGAGGACAAGAACTTCCAGGGTCGTTCCTATGAGACCAGTCAGGACTGCCCTGACATGTCCTCCCATCTGAACAGGTGCCACTCCTGCAGGGTTGAGAGTGGCTGCTTCATGGTCTACGATCGCCCCAACTTCATGGGAAACCAGTACTTCATGAGGAGGGGCGAGTACTCTGACTACCAGCGTATGATGGGAATGAACGACTGCATCAGGTCCAGCCGTAACGTCCCCATGCACAGAGGAAACTACAAGATGAGGATCTACGAGAAGGAGAACTTCGGAGGTCAGATGCACGAGATGATGGACGACTGTGACTCCATCCAGGAGCGTTACCGCATGTCCGACTGCCAGTCCTGCAACGTGATGGACGGCCACTGGCTGATGTATGAGCAGCCCCACTACAAAGGCAGACAGATGTACATGAGGCCTGGAGAGCACAGAAATCTCAGGGAGATGCAGGGACACAATGGAATGAAGTTCAGTTCCATCAGAAGGATCACCGACTCCTGTTAAATTCACAGGACCACTTGTTCAATGAAACAGTTGATTTtataataaaaatgtgtttttcttattTAATATCAAGTA
>XM_036964483.1
tccccagcacaagatgaaCCTGTGTAATgctcgtgctgtttaatcagtgtCTTGATGtgcaacacctgtcaggtggatggattgtcttggcaaaggagaaatgctaaccAACAGGGATGTGTAACGATCTTCGTCTTCATCggatgaggagtaggaaggatcggaccaaaacgcagcttgATCATCTTCTTCGAGGACAAGAACTTCCAGGGTCGTTCCTATGAGACCAGTCAGGACTGCCCTGACATGTCCTCCCATCTGAACAGGTGCCACTCCTGCAGGGTTGAGAGTGGCTGCTTCATGGTCTACGATCGCCCCAACTTCATGGGAAACCAGTACTTCATGAGGAGGGGCGAGTACTCTGACTACCAGCGTATGATGGGAATGAACGACTGCATCAGGTCCAGCCGTAACGTCCCCATGCACAGAGGAAACTACAAGATGAGGATCTACGAGAAGGAGAACTTCGGAGGTCAGATGCACGAGATGATGGACGACTGTGACTCCATCCAGGAGCGTTACCGCATGTCCGACTGCCAGTCCTGCAACGTGATGGACGGCCACTGGCTGATGTATGAGCAGCCCCACTACAAAGGCAGACAGATGTACATGAGGCCTGGAGAGCACAGAAATCTCAGGGAGATGCAGGGACACAATGGAATGAAGTTCAGTTCCATCAGAAGGATCACCGACTCCTGTTAAATTCACAGGACCACTTGTTCAATGAAACAGTTGATTTtataataaaaatgtgtttttcttattTAATATCAAG

Function

NR:

description
gamma-crystallin M3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021584491.2 False 981 mRNA 0.45 3 55997766 55999047
XM_036964483.1 True 775 mRNA 0.49 3 55997768 55999561

Neighbor

gene id symbol gene type direction distance location
LOC110520250 LOC106586358 coding downstream 9718 55987103 ~ 55988048 (-)
LOC110520251 LOC106586357 coding downstream 12289 55983873 ~ 55985477 (-)
LOC110520241 LOC106586374 coding downstream 73883 55890382 ~ 55923883 (-)
LOC110520238 LOC106586370 coding downstream 176524 55779503 ~ 55821242 (-)
LOC110504309 plcl1 coding downstream 281981 55592364 ~ 55715785 (-)
LOC110520252 LOC106586360 coding upstream 4271 56003832 ~ 56004785 (-)
LOC118936311 LOC106586361 coding upstream 17699 56017260 ~ 56018372 (-)
LOC110520253 LOC106586384 coding upstream 41199 56040760 ~ 56041698 (-)
LOC110520254 LOC106586385 coding upstream 48250 56047811 ~ 56049145 (-)
LOC110520260 NA coding upstream 495590 56495151 ~ 56578650 (-)
G276518 NA non-coding downstream 20093 55977460 ~ 55977673 (-)
G276497 NA non-coding downstream 53607 55943419 ~ 55944159 (-)
G276420 NA non-coding downstream 60744 55936617 ~ 55937022 (-)
G276434 NA non-coding downstream 63636 55933836 ~ 55934130 (-)
G276661 NA non-coding upstream 181197 56180758 ~ 56181147 (-)
G276664 NA non-coding upstream 186591 56186152 ~ 56186362 (-)
G276675 LOC106586387 non-coding upstream 200612 56200173 ~ 56200414 (-)
G276689 NA non-coding upstream 217677 56217238 ~ 56217453 (-)
G276722 NA non-coding upstream 272790 56272351 ~ 56361440 (-)
G275250 NA other downstream 586279 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 878554 55068639 ~ 55122013 (-)
G274344 LOC106586294 other downstream 1314961 54679918 ~ 54682805 (-)
G272713 LOC106586324 other downstream 2746682 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 3288950 52693956 ~ 52708816 (-)
si:dkey-91i10.3 LOC106586420 other upstream 1271221 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 1403423 57402984 ~ 57403575 (-)
G277749 LOC106586429 other upstream 1584825 57584386 ~ 57589183 (-)
G284018 NA other upstream 6715014 62714575 ~ 62715177 (-)
G286522 NA other upstream 8969988 64969549 ~ 64970755 (-)

Expression


Co-expression Network