LOC118936311 (LOC106586361)



Basic Information


Item Value
gene id LOC118936311
gene name LOC106586361
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56017260 ~ 56018372 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021597426.2
ATGCTGATTCAGCGGTTTGAACAATGGAGCTAGGGATTCTTTAGGTTTGGTCAGGTATAAAAGAAAGGGTTAAACCAGGTAGAAAGTCAGTTCAGGAGCAGCAACCAGCAGCACAGTGAGCAAATATGTCCAACACCAGCATGAACATGGGCAGGGCCACCTTCTATGAGGACAGGAACTTCCAGGGTCGCTCTTATGAGTGCAGCTCCGACTGCCCTGACATGTCCTCCTACATGAGCAGGTGCCAATCCTGCAGGGTTCAGAGCGGCTGCTTCATGGTGTACGAGCGCCCCAACTATATGGGAAACCAGTACTTCATGAGGAGGGGAGAGTACTCAGACTACCAGAGTATGATGGGAATGAGCGATGGTATCAGGTCCTGCCGCATGATCCCCATGCACCGTGGAAACTTCAGGATGAGGATCTACGAGAGGGAGAACTTCGGAGGTCAGATGCACGAGATGATGGACGACTGTGACTCCATCCAGGAGCGTTACCGCATGTCTGACTGCCAGTCCTGCAACGTGATGGACGGCCACTGGCTGATGTACGAGCAGCCCCACTTCAGAGGCAGGCAGATGTACATGAGGCCTGGAGAGTACAGGAGCTTCAGGGATATGGGCATGGGAATGGGAGGCATGAGCGGTGGCATGAGGTTTATGAGCATGAGGCGTATCATGGATAACATGACTATGTAATTTTCTCAAAGGTTGTACGGAAATGGTTGATTAAATTTATTTCAACATTTTAAAACTG

Function


NR:

description
gamma-crystallin M3-like isoform X1

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021597426.2 True 756 mRNA 0.50 3 56017260 56018372

Neighbor


gene id symbol gene type direction distance location
LOC110520252 LOC106586360 coding downstream 12475 56003832 ~ 56004785 (-)
LOC110505323 LOC106586359 coding downstream 17699 55997766 ~ 55999561 (-)
LOC110520250 LOC106586358 coding downstream 29212 55987103 ~ 55988048 (-)
LOC110520251 LOC106586357 coding downstream 31783 55983873 ~ 55985477 (-)
LOC110520241 LOC106586374 coding downstream 93377 55890382 ~ 55923883 (-)
LOC110520253 LOC106586384 coding upstream 22388 56040760 ~ 56041698 (-)
LOC110520254 LOC106586385 coding upstream 29439 56047811 ~ 56049145 (-)
LOC110520260 NA coding upstream 476779 56495151 ~ 56578650 (-)
arl5a arl5a coding upstream 571185 56589557 ~ 56600573 (-)
LOC110520263 LOC106586393 coding upstream 582432 56600804 ~ 56650953 (-)
G276518 NA non-coding downstream 39587 55977460 ~ 55977673 (-)
G276497 NA non-coding downstream 73101 55943419 ~ 55944159 (-)
G276420 NA non-coding downstream 80238 55936617 ~ 55937022 (-)
G276434 NA non-coding downstream 83130 55933836 ~ 55934130 (-)
G276661 NA non-coding upstream 162386 56180758 ~ 56181147 (-)
G276664 NA non-coding upstream 167780 56186152 ~ 56186362 (-)
G276675 LOC106586387 non-coding upstream 181801 56200173 ~ 56200414 (-)
G276689 NA non-coding upstream 198866 56217238 ~ 56217453 (-)
G276722 NA non-coding upstream 253979 56272351 ~ 56361440 (-)
G275250 NA other downstream 605773 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 898048 55068639 ~ 55122013 (-)
G274344 LOC106586294 other downstream 1334455 54679918 ~ 54682805 (-)
G272713 LOC106586324 other downstream 2766176 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 3308444 52693956 ~ 52708816 (-)
si:dkey-91i10.3 LOC106586420 other upstream 1252410 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 1384612 57402984 ~ 57403575 (-)
G277749 LOC106586429 other upstream 1566014 57584386 ~ 57589183 (-)
G284018 NA other upstream 6696203 62714575 ~ 62715177 (-)
G286522 NA other upstream 8951177 64969549 ~ 64970755 (-)

Expression



Co-expression Network