LOC118936648 (rbm44)


Basic Information

Item Value
gene id LOC118936648
gene name rbm44
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56325002 ~ 56329352 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974690.1
AAGTACAACAACAGTAGCAAACCAGACTAAATGCCTGAGCCTCTAATTACGTTTCGGTGTCGAAGAACCTGATTGGCTGTCAAAAATCAATCGACAGGTGGCGTGCACGTGCAATGTTTTAAATAATCGCTTCACAACATAATCCCACTTCGACCAAGAACATGTGGTATCCCTTCCCAATGCTCATGCCGTTGTCTCTGTCGCCGGAGCCACAGCGTCCATCAGATATTTCTCAAACGCCCTATGCATCAGGGATGATTCAGATGCATATGGTACCTTGTGACCAACGTTTCTTTCAAAATGCAATGGACGGGTTGGCTGACCCTCCGTCTTTGTCGATAGAGGACTGCAGGAAATTCCTTCTCAACAGGTCTGTGTTTGACTTGGTGAAAGTCACCCATTTCCTGGAGCTGACAGACCCCAAGCTGCTGGGTTGGTACTTATCGCTGCCTGTGGAGGACAGGAAGCTCATACAAGAGGAAGGAGGACTCCATCGGTTTCTGCAGAGGCATCCGGCTCTGAACGTAGCCAGACAACTGGTTTATGTGAAACAACAGGTGAGAGGTTGCTGGAAACCTCCTGCTGTTACGCAGACGATGTCGTCAAACCTAAACAACATAGTTTCTGCTGTTCTCAGATCCAGAAGGCCCACATTCTATGGTGTGATTCAGTGTCCCAACTGTGGAACCAGTTGTTCTTCAGGAGCTAAAATATGCCGACGCTGTAGCACACCTATCCATAAGGAGATCCCGGCATGCCAGTCAGGGCACGGAGGAGTCCAGTCAGTCCAAGCCCACCACCAGGCGGAAGCAGGAGCAGTGCAACAGTTCAGGGGATGTCAGCCTCAGtcctttactactactactactactaccttcCCATCCACAACAGTGGGCTGTCTGGTCAACCTTCAGGATAGCTTCCAGTCAGCCTGTGGTGATACCAGTGGCAGCCATATTGGAGCCACAGAGGATTCTCCAGACCAACAGGAGGCGCACTTCTCCAAGGTCGAGCTGCTCTCTTAGCTGTGGGAGGAAGGGCGTtggcaggatggcaacaac
>XM_036974694.1
AGTAGCAAACCAGACTAAATGCCTGAGCCTCTAATTACGTTTCGGTGTCGAAGAACCTGATTGGCTGTCAAAAATCAATCGACAGGTGGCGTGCACGTGCAATGTTTTAAATAATCGCTTCACAACATAATCCCACTTCGACCAAGAACATGTGGTATCCCTTCCCAATGCTCATGCCGTTGTCTCTGTCGCCGGAGCCACAGCGTCCATCAGATATTTCTCAAACGCCCTATGCATCAGGGATGATTCAGATGCATATGGTACCTTGTGACCAACGTTTCTTTCAAAATGCAATGGACGGGTTGGCTGACCCTCCGTCTTTGTCGATAGAGGACTGCAGGAAATTCCTTCTCAACAGGTCTGTGTTTGACTTGGTGAAAGTCACCCATTTCCTGGAGCTGACAGACCCCAAGCTGCTGGGTTGGTACTTATCGCTGCCTGTGGAGGACAGGAAGCTCATACAAGAGGAAGGAGGACTCCATCGGTTTCTGCAGAGGCATCCGGCTCTGAACGTAGCCAGACAACTGGTTTATGTGAAACAACAGGTGAGAGGTTGCTGGAAACCTCCTGCTGTTACGCAGACGATGTCGTCAAACCTAAACAAATCCAGAAGGCCCACATTCTATGGTGTGATTCAGTGTCCCAACTGTGGAACCAGTTGTTCTTCAGGAGCTAAAATATGCCGACGCTGTAGCACACCTATCCATAAGGAGATCCCGGCATGCCAGTCAGGGCACGGAGGAGTCCAGTCAGTCCAAGCCCACCACCAGGCGGAAGCAGGAGCAGTGCAACAGTTCAGGGGATGTCAGCCTCAGtcctttactactactactactactaccttcCCATCCACAACAGTGGGCTGTCTGGTCAACCTTCAGGATAGCTTCCAGTCAGCCTGTGGTGATACCAGTGGCAGCCATATTGGAGCCACAGAGGATTCTCCAGACCAACAGGAGGCGCACTTCTCCAAGGTCGAGCTGCTCTCTTAGCTGTGGGAGGAAGGGCGTtggcaggatggcaacaac
>XM_036974678.1
GCAAACCAGACTAAATGCCTGAGCCTCTAATTACGTTTCGGTGTCGAAGAACCTGATTGGCTGTCAAAAATCAATCGACAGGTGGCGTGCACGTGCAATGTTTTAAATAATCGCTTCACAACATAATCCCACTTCGACCAAGAACATGTGGTATCCCTTCCCAATGCTCATGCCGTTGTCTCTGTCGCCGGAGCCACAGCGTCCATCAGATATTTCTCAAACGCCCTATGCATCAGGGATGATTCAGATGCATATGGTACCTTGTGACCAACGTTTCTTTCAAAATGCAATGGACGGGTTGGCTGACCCTCCGTCTTTGTCGATAGAGGACTGCAGGAAATTCCTTCTCAACAGGTCTGTGTTTGACTTGGTGAAAGTCACCCATTTCCTGGAGCTGACAGACCCCAAGCTGCTGGGTTGGTACTTATCGCTGCCTGTGGAGGACAGGAAGCTCATACAAGAGGAAGGAGGACTCCATCGGTTTCTGCAGAGGCATCCGGCTCTGAACGTAGCCAGACAACTGGTTTATGTGAAACAACAGGTGAGAGGTTGCTGGAAACCTCCTGCTGTTACGCAGACGATGTCGTCAAACCTAAACAACATAGTTTCTGCTGTTCTCAGATCCAGAAGGCCCACATTCTATGGTGTGATTCAGTGTCCCAACTGTGGAACCAGTTGTTCTTCAGGAGCTAAAATATGCCGACGCTGTAGCACACCTATCCATAAGGAGATCCCGGCATGCCAGTCAGaagaggagaaagagttAGGTCTTCTTCCCAACAACGTGAAGGAGGAGCTAAATCTGTTCAACTGTTCAGGGCACGGAGGAGTCCAGTCAGTCCAAGCCCACCACCAGGCGGAAGCAGGAGCAGTGCAACAGTTCAGGGGATGTCAGCCTCAGtcctttactactactactactactaccttcCCATCCACAACAGTGGGCTGTCTGGTCAACCTTCAGGATAGCTTCCAGTCAGCCTGTGGTGATACCAGTGGCAGCCATATTGGAGCCACAGAGGATTCTCCAGACCAACAGGAGGCGCACTTCTCCAAGGTCGAGCTGCTCTCTTAGCTGTGGGAGGAAGGGCGTtggcaggatggcaacaac
>XM_036974684.1
AAATGCCTGAGCCTCTAATTACGTTTCGGTGTCGAAGAACCTGATTGGCTGTCAAAAATCAATCGACAGGTGGCGTGCACGTGCAATGTTTTAAATAATCGCTTCACAACATAATCCCACTTCGACCAAGAACATGTGGTATCCCTTCCCAATGCTCATGCCGTTGTCTCTGTCGCCGGAGCCACAGCGTCCATCAGATATTTCTCAAACGCCCTATGCATCAGGGATGATTCAGATGCATATGGTACCTTGTGACCAACGTTTCTTTCAAAATGCAATGGACGGGTTGGCTGACCCTCCGTCTTTGTCGATAGAGGACTGCAGGAAATTCCTTCTCAACAGGTCTGTGTTTGACTTGGTGAAAGTCACCCATTTCCTGGAGCTGACAGACCCCAAGCTGCTGGGTTGGTACTTATCGCTGCCTGTGGAGGACAGGAAGCTCATACAAGAGGAAGGAGGACTCCATCGGTTTCTGCAGAGGCATCCGGCTCTGAACGTAGCCAGACAACTGGTTTATGTGAAACAACAGGTGAGAGGTTGCTGGAAACCTCCTGCTGTTACGCAGACGATGTCGTCAAACCTAAACAAATCCAGAAGGCCCACATTCTATGGTGTGATTCAGTGTCCCAACTGTGGAACCAGTTGTTCTTCAGGAGCTAAAATATGCCGACGCTGTAGCACACCTATCCATAAGGAGATCCCGGCATGCCAGTCAGaagaggagaaagagttAGGTCTTCTTCCCAACAACGTGAAGGAGGAGCTAAATCTGTTCAACTGTTCAGGGCACGGAGGAGTCCAGTCAGTCCAAGCCCACCACCAGGCGGAAGCAGGAGCAGTGCAACAGTTCAGGGGATGTCAGCCTCAGtcctttactactactactactactaccttcCCATCCACAACAGTGGGCTGTCTGGTCAACCTTCAGGATAGCTTCCAGTCAGCCTGTGGTGATACCAGTGGCAGCCATATTGGAGCCACAGAGGATTCTCCAGACCAACAGGAGGCGCACTTCTCCAAGGTCGAGCTGCTCTCTTAGCTGTGGGAGGAAGGGCGTtggcaggatggcaacaac

Function

symbol description
rbm44 Predicted to enable protein homodimerization activity. Predicted to be located in cytoplasm and intercellular bridge. Orthologous to human RBM44 (RNA binding motif protein 44).

NR:

description
RNA-binding protein 44 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974690.1 False 1061 mRNA 0.51 8 56325002 56329352
XM_036974694.1 False 1028 mRNA 0.51 8 56325014 56329352
XM_036974678.1 False 1114 mRNA 0.50 8 56325018 56329352
XM_036974684.1 True 1081 mRNA 0.51 8 56325030 56329352

Neighbor

gene id symbol gene type direction distance location
etv5a LOC106586388 coding upstream 4284 56303426 ~ 56320718 (+)
LOC110504343 LOC106586387 coding upstream 35816 56139812 ~ 56289186 (+)
LOC110505342 LOC106586366 coding upstream 234027 56087619 ~ 56090975 (+)
LOC110504333 LOC106586365 coding upstream 240340 56083841 ~ 56084662 (+)
LOC110505333 LOC106586363 coding upstream 245706 56077184 ~ 56079296 (+)
itgb5 LOC106586391 coding downstream 8676 56338028 ~ 56434926 (+)
LOC110505355 NA coding downstream 110514 56439866 ~ 56440949 (+)
tnfaip6 tsg6 coding downstream 124652 56454004 ~ 56462796 (+)
rif1 LOC106586392 coding downstream 134036 56463388 ~ 56494844 (+)
LOC110520266 phs1 coding downstream 338781 56668133 ~ 56680567 (+)
G275776 NA non-coding upstream 15339 56308307 ~ 56309663 (+)
G275673 NA non-coding upstream 29785 56292849 ~ 56295217 (+)
G275722 NA non-coding upstream 105146 56219643 ~ 56219856 (+)
G275720 NA non-coding upstream 106626 56217653 ~ 56218376 (+)
G275719 NA non-coding upstream 107459 56217318 ~ 56217543 (+)
G275846 NA non-coding downstream 94661 56424013 ~ 56424916 (+)
G275860 NA non-coding downstream 118244 56447596 ~ 56447865 (+)
G275863 NA non-coding downstream 122525 56451877 ~ 56452654 (+)
G275870 NA non-coding downstream 147016 56476368 ~ 56477171 (+)
G275871 NA non-coding downstream 148575 56477927 ~ 56478418 (+)
G275553 LOC107595854 other upstream 408869 55915329 ~ 55916133 (+)
G275542 LOC106586374 other upstream 424259 55900194 ~ 55900743 (+)
LOC110520231 dbr1 other upstream 949476 55371759 ~ 55375526 (+)
G274592 NA other upstream 1449887 54874399 ~ 54875115 (+)
G273094 LOC106586310 other upstream 2483385 53841264 ~ 53841617 (+)
G277296 NA other downstream 935215 57264567 ~ 57264892 (+)
G277973 NA other downstream 1460382 57789734 ~ 57790332 (+)
G280315 NA other downstream 3723364 60052716 ~ 60054417 (+)
G281141 NA other downstream 3958036 60287388 ~ 60303967 (+)
G281591 LOC106586456 other downstream 4410887 60740239 ~ 60757350 (+)

Expression


Co-expression Network