LOC110520256 (rbm44)


Basic Information

Item Value
gene id LOC110520256
gene name rbm44
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56329311 ~ 56336070 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597437.2
TCTTAGCTGTGGGAGGAAGGGCGTtggcaggatggcaacaactgcagTAGTGTGGTGGTATATAAGGATCCGTCTGCCCAGACTAGCTTCTCTCTGGATATGGAGCTGGAGTTACAAAGCCAGAGAGGAAAAACCCTGAGCCAGTCTGCCATCGAAAGCCAGGAGGGTGAATCCATGGCCAACTCCATGCATGACCAGATGGCAGACTTCCCCATGTTGGACCTGGAGACTCCTCCAGAGTACTACAGCTTCAACAGCACTAGGATGGACCGCACAGAGTGGAACGACACCAGCATCAACACCAGCCAGTTAGCTGAGCCGGACCTCGACGACTCACTATCACTCATGGCCACCATGGGGAGCACTGAGCAGCCTAGCGGCGCAGTGGAGGTGGAGCCACCTGAAGGCAGTATGGTGTCTTCCTGCGCTGGAGACCGCAGCGAGTACTGTGATTGGACTTACGACAACTGCCCCGGCAACCTAGCAAATGAGGAAGAGGCCTCGAGATGCGAGCTAGAGAATAACGGTGTCGACTACCGGAGCCTCATGAAAGAGGATGGGAGTATTCTCATGTATAAAGCAAGTAATGAGGGGACACCTGACTTAAACGTGACACCCCCTCAAGGCCAAACCAAGATGGACCAGTCTGGTTGGTCTAGAGAGAGTCGCAGTGCACCCCAAAGCCTGAAGAAAGAGGAGCTGTCCATCTATGAGGAGTCCTTCTTGTCAATAAGCCCTGGTGGGGCATCGGCGGACGTCGTGACCACCACACAGCATGAGAACGGTATGTCTGCGTTCTCGCTAGTCAATCTGAACCAGACTTTTGATCTCTCGCCTTCACGGGTCACAGAAGCCAGGCTAAGCACAGCCGACCATTCAACAAATACTTGGCCTGCCGTCGCTAAACATGTGTTGGTTGGTATTGACCACAGTCTAACAGGCTGCAACCAGAACACACAAACTCAGGGCACAGCTACAACTGACAAGTCTGTCATCACTGAAGTCCACATGGCAGACCTGGAGTATCTGACTGAGGAATTCATCAAGCTGAAATTTTCTCAAGAGGAACTGAAAGAGCTGAAAGAGCAAATGGCAAGCTCTGCAGGCggtgtgagtgtgagagatgGAAGAGGCTGTGACAACGCGGTCCGTGGTGAATGTGACTGTGGCCAGCGTGCCACGCGGGCAGAGCTGAACCTGCTGGCCCTGCAGTATGGGATGTGCCAACGGCACTGCTGGAGACGCTACTACACCTCACCTGAGGGAGACCGTCTGGTCCAGGGGACTGAGGGCCCTCCTGAGAGCCTGGTGACGGTGCTGCAGGTCCTGGAGGTAGactacagagagatgaggagacgGGTCCTGTCAGGTATACCCCTGGACCAGCTCAGGCCCCTGTCTGTCGACACCCAGAGGATCACCTCAGGGACCAGCTATGTCCCCCAACATATAATTGACGAGTCTTTGGGAAATGCTCTGTCTGATGCCTCAGGTAGGAGCTCCCAGCAGTTGCAGGTAGAGGATGCCCGTGTTGACGACGCCAGTGTAGGTGGTGATGGAGAGTTAAACAGACCCAGTCTGTCCCAGTCTGTTTTATCAGTCCTTGGACAGGATGATGGGATGGTTGGCAGGATCAAGGCAGAAGGGCCCGTTGGTAACCCAAAGGCTGAGGACTGCAGATCTGTGAAAGCGGTCATCCACCTCCCCCAGCAGCCTGTAGTCAACCGGAGGCCCAGGCCAGGTGGAACCAAAGACCACAACTCGAGCGAGGCGTGGTTCGATGCAGAGGAGGACCTTGAGCCTGATGGTGTAGAGCTGAAGGAAGGAGGTCTGGCTGAGGTCCTGGTGGAGGAAGGAAATGGCAAGAATAGGGTTGAGGGGGAAAAGCTGCATGACAGACATACCCCTAAAGATTTTTCGTTCACGGGAGGCGTTGGGGAGAAGGATCAGAGCTCCTTCCTGTGCGTCACAGACCTTCCCAGTGATGTCACGGAGAGAGAagttatgctctggtttgagaAGTATCAGGCTTCTGAAGTGAGCATTTCCATCTTCAGCAACAACCTCCGAGTTGCCATAGTGACTGTGAGTGGTCCAAAGATGGCTGACAGTGCAGTGAGTGAGATGGACGGGTGCAGTATGCATGGACAGAAGGTGCATGTGGCGCACATCTGCAGCCCAAGCCACACTGGTAACCAGAGCCAGGGTCAGGGGCGGCAAACCCAGCAGCAGCATAGTCCCTCAGCCAGCACCAAGGCAGGGCCCTCTGGAGACACTCCATGCCCCCAAGACTCCAAGAGGAGAAACACCCATATCACCACCCCACTGATGCCCCTGCAGCTCAGCCTCCAGAAGAGGACCACCGTGTGTGACTCCCCCACGGCGTCGGGGACCTGTGTGCCCCAGCACTACGCCACCATGGGTAGCTTCGATACACTGATGGCCCATTTGTCATTGCGCCACCCAGAGGCAGGGAGGCAAAGGATTGTAGATGCCCTGCTGGAGCTGAGGGCCAAACACCAGGGGTTCCTCAGTGGCCTGCCTCTCAAGACCATTGTAAACATGACCTCTGACCTGCTGACACGATAAGGACTCCACTTTCTATTCTATTGTTGATATTTGCCTTTGTTGAAACACAGGTTACAGGTTTGCCCAAAGCCAGGCTTTTGATTTACTTGAATGTAGTAAACAACTTATCcactgttttgtttgttcctcACATACGGAATGTTATTACTCTACTCTTTTGCTACAATACTCAGTGAATTGTTTTATCTACTTTTGAACCTGAAAAGTGCAAATATTAATAATTTTTTTGTAGTTTGCAAATTGTTCAATTACAATTTAATTGTTAATTCAAATCACGGTAGAATTGCAAAGGAGTTTTGCAGAATGttttatgttctgtttcagtTAAAATAAATCTGAGAACCTGAAATGTTCTTGGATATCAGGGTAGGTTgtgtttaaaaatacatttgttttgttcTCAACGGGACAATTTGCTTAATAATGTCTGGAAGTGTAGTTCATGTATCCTTCCAGATTCTACCATTTTCCCCTTTGTCCACCCTTTCAGTATTATAATACTGTTATTGacaaagctacagtgccttcagaaagtattcataccccttgacttattccacattttgtcagactgaattcaaaatggataaaatagatctacacacaataccccataatgacaaagtaagcATGTTTTTAGTTTTGTCATATGTAGAAAATGAAATGCAGAAgcatctcatttacataaatgttcacacccctgagtcaatactttgtagaagcacctttggcagtgattacagcagtgagtctttctgggtaagtctaagagctttgcacacctggattgtgtaacatttgcccatttattattttcaaaattggTTGTTGGTCTTTGttacaaccattttcaggttttgccatagattttcaagctgtaACTcagacactcaggaacattcacccgCTTCTTGGTAAGgaattccagtgtagatttggtcttgttttaggttattgtcctgctgaaaggtgaattgatctcccagtgtctggtggaaagcagatgaCCAGGTTTTccgctaggattttgcctgtgcttaatgccataatgttttgtgttttttatttttatttttttattttattctcccCAGTCTTttacgattacaagcatacccataacatgacgcaTCCACCACTGTgtattttccgaaggcactgtaattagcCTGTTGGATGTATAATTTCTGTTTGGATATTGTTGCTTTAATAAAAGAGACTATAGTTTGGGA

Function

symbol description
rbm44 Predicted to enable protein homodimerization activity. Predicted to be located in cytoplasm and intercellular bridge. Orthologous to human RBM44 (RNA binding motif protein 44).

NR:

description
RNA-binding protein 44 isoform X3

GO: NA

KEGG:

id description
K25080 RBM44; RNA-binding protein 44

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597437.2 True 3821 mRNA 0.49 11 56329311 56336070

Neighbor

gene id symbol gene type direction distance location
etv5a LOC106586388 coding upstream 8593 56303426 ~ 56320718 (+)
LOC110504343 LOC106586387 coding upstream 40125 56139812 ~ 56289186 (+)
LOC110505342 LOC106586366 coding upstream 238336 56087619 ~ 56090975 (+)
LOC110504333 LOC106586365 coding upstream 244649 56083841 ~ 56084662 (+)
LOC110505333 LOC106586363 coding upstream 250015 56077184 ~ 56079296 (+)
itgb5 LOC106586391 coding downstream 1958 56338028 ~ 56434926 (+)
LOC110505355 NA coding downstream 103796 56439866 ~ 56440949 (+)
tnfaip6 tsg6 coding downstream 117934 56454004 ~ 56462796 (+)
rif1 LOC106586392 coding downstream 127318 56463388 ~ 56494844 (+)
LOC110520266 phs1 coding downstream 332063 56668133 ~ 56680567 (+)
G275776 NA non-coding upstream 19648 56308307 ~ 56309663 (+)
G275673 NA non-coding upstream 34094 56292849 ~ 56295217 (+)
G275722 NA non-coding upstream 109455 56219643 ~ 56219856 (+)
G275720 NA non-coding upstream 110935 56217653 ~ 56218376 (+)
G275719 NA non-coding upstream 111768 56217318 ~ 56217543 (+)
G275846 NA non-coding downstream 87943 56424013 ~ 56424916 (+)
G275860 NA non-coding downstream 111526 56447596 ~ 56447865 (+)
G275863 NA non-coding downstream 115807 56451877 ~ 56452654 (+)
G275870 NA non-coding downstream 140298 56476368 ~ 56477171 (+)
G275871 NA non-coding downstream 141857 56477927 ~ 56478418 (+)
G275553 LOC107595854 other upstream 413178 55915329 ~ 55916133 (+)
G275542 LOC106586374 other upstream 428568 55900194 ~ 55900743 (+)
LOC110520231 dbr1 other upstream 953785 55371759 ~ 55375526 (+)
G274592 NA other upstream 1454196 54874399 ~ 54875115 (+)
G273094 LOC106586310 other upstream 2487694 53841264 ~ 53841617 (+)
G277296 NA other downstream 928497 57264567 ~ 57264892 (+)
G277973 NA other downstream 1453664 57789734 ~ 57790332 (+)
G280315 NA other downstream 3716646 60052716 ~ 60054417 (+)
G281141 NA other downstream 3951318 60287388 ~ 60303967 (+)
G281591 LOC106586456 other downstream 4404169 60740239 ~ 60757350 (+)

Expression


Co-expression Network