itgb5 (LOC106586391)


Basic Information

Item Value
gene id itgb5
gene name LOC106586391
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56338028 ~ 56434926 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974695.1
TCTCTATGCGAATGGGCGGAGACTAGCGGCTGGATTTGCAACTATAGTGactgattaaaacacacattTGCTAGGGAAAAACTATTCTAATAAACTGAAATTATATTCTACATTTAGACCGAACTTCTACTTTCAACTAATTTTGACTGGCAATTATTGCACAAAAATAAGGTATTATAACCATTTGAAAAGTAATTGAAAACAATAACCAATGGTGTCAGTTATGAGTGAACTCCGGACATCATGGTAAACTGGCTCTGCATAACTACTTTCAAAAATCACAGCTTTTGACTCCTTAAACCCAACATTGCAAAATATTGTTTTCCTCCTGTTGTGCGGAATTCGTCAGAAGGACAATgaattgtaatgtttgtttggaGGTCGCGTTTACATTATGAGGCCGATTAGCTTTGCTGGAGTTCAAATGGACAAAGAGAATGGTTCACTAGTCTTCACCGACCGAGCAGACAGAACCTGGATCTAAAGTGAGGTTCGACTGCCGACTTCAGTGCCACAAACATAGACTTTTGAATATCGGACCCACTACGAGGAAATTATGTGGAGCCCATGGCAGTTGGTGTACCGTACAGCCTTCGGCTGCATGGTTCTGGAAATATTTATTCACAATGTTGCACAAGGACTCAATGTTTGTATGAGTGGCAGCGCTACATCCTGTGAAGAATGCCTCCTCATCTCTCCGAGCTGCGCCTGGTGCGCGCAAGAGGAGTTTGGCAGGGCGAGGACCCTGACGTCGCGGTGTGACCTGAGTCAGAACCTGCAGAAGAGAGGCTGTGAGGCCCATAACATAGAGAGTCCTAGTAGCACAACCATGGTAGTGAAGAGCGAACCCCTCAGCTCCAAAGGCTCCGGGCCGACCCAGTATGATGTCATCCAGATCATGCCCCAGAAGATCTCCCTGAATCTTAGACCAGGTGACCAGACCTCATTCGAAGTGCAGATGCGTCAGGTGGAGGACTACCCTGTTGACCTGTACTACCTGATGGACCTGTCTCTGTCCATGAAGGATGACCTGGACACCATCAGGAACTTGGGCACCAAGCTGGCTGACGAGATGAGCAAACTCACCTCAAACTTCAGACTAGGCTTTGGCTCCTTCGTAGACAAGAACATGTCACCATTCTCCTACACAGCCACCAAGTACCAGGACAACCCCTGCAATGGATACAAGCTGTTCCCCAACTGTGTCCCTTCCTTCGGGTTCCGCCACCTCCTCTCCCTGACGGACAAGGTGGATCGCTTCAACGAGGAGGTGCAGAAACAGATGGTGTCTCGCAACAGGGACGCTCCGGAGGGAGGCTTCGACGCCATCCTGCAGGCTGCTGTCTGTAAGGAGAGGATAGGTTGGAGGAAGGAGGCCTTCCACCTGCTGGTGTTTGCCACAGACGATGTGCCTCACCTGGCCTTGGACGGTAAACTGGGAGGCCTGGTCCAGCCCCATGATGGGGAGTGCCACATGAATGAGAAGAACGAATACAGCGGCTCCACCAAGATGgacTATCCCTCTCTGGCTCTGTTGGGAGAGAAGCTGGCGGAGAACAACATCTATCTCATCTTCGCTGTGACTAAAAGGCTCTATGTCATTTACAAGAATTTCACAGCACTGATACCTGGAACTACAGTGGAGATTCTGGATCAGGACTCCAAGAACATCATCCAACTCATCGTTAACGCCTACAATAACATCCGGTCCAAAGTGGAGCTGACCGTGTGGGATCAACCTGAAGACCTCAGTCTGTCCTTCACGGCCACCTGTCAGGACGGACAGCCCCTACCAGGCCTCAGGAAGTGTGCCGACCTCAAGATCGGAGACACGGTGTCCTTCAACGTGAGTGTGGATGCTAGGGGCTGCCCCGCACCTGGCACCCAGCAGAGATTCACCATCAAACCTGTGGGCTTGAAGGATCGTCTGGAGGTGTCAGTGGACTACCGCTGTGCCTGTGGCTGCACCGACCAGACCCAGGCTAACAGTAGCCGCTGCAGCTCTATCGGACAGTACACCTGTGGTACCTGCCGCTGTGACCCGGGCTACCTGGGCGCCCGCTGTGAGTGCCAGGAGGGCGAGGCTGGCAGCATGTACCTGAGCGCCTGTAGAGAGGCGGAGGGGAAGCAGATCTGTAATGGGAGAGGGGAGTGCAGTTGTAACCAGTGCCTCTGCTATGAGTCAGAGTTCGGGAAGATCTACGGGACCTTCTGTGAGTGTGACGACTTCTCCTGCGCCCGACACAAGGGCATCCTCTGCTCAGGTCACGGAGAGTGCCACTGTGGGGAGTGTAAGTGCCATGCGGGCTACATCGGAGACAACTGTAACTGCTCCACGGACACGTCTTCCTGTGTGTCTGATGACGGGAAGATCTGTAGTGGGCGAGGCAGCTGTGTGTGCGGGCACTGCCAGTGTACAGAACCAGGGGCCTTCGGGGACACCTGCGAGAAATGCCCCACCTGCCCCGATGCCTGTGGCACCAAAAGgGAATGCATCGAGTGCCGGCTTTTTGACTCCGGAAGACTGTCCGACAACCAGACGTGCCAGCGGCTATGCAAGGACGAGATCATCACTGTGGAAACGCTTAAAACGGAAGACCCCAACGCTGTCCTTTGCTTGTACAAGACGGAGAACGAGTGTGTGATGAAGTTCATGTACTCTGAACACGCCAACGGCATGTCAGTCCTCACCGCGCTCAAAGAGCCAGAGTGTGGCGCAGCGCCGGATGCCATGACGGTCCTCCTGGCAGTGGTGGGAAGTGTCCTGCTGGTGGGCATTGTGCTGCTAGCCATCTGGAAGCTGGTCATCACCGTGCACGACCGGCGGGAGTTTGCCCGCTTCCAGAGCGCACGCTGCCGCGCACGTTACGAGATGgcctccAACCCCCTCTACAAGCAGCCCATCTCCAGCCACCCAATAGAGACAGACTTCATTATGTATGGCAAGTCTTACAACGGAGCAGCCCACTGACCACCTCCCCATGGGGGTGCTGGTGGTGCGGGGGCACGGCAGGACCGGTCCAAGTAGAGAACCCAGGAGGGGTGGGAAATTATTAAATAAACTTAACCATCTATCTGATCTGCCAAGGACTTATGACAAACAGAAGTAAAAGTAGTAGTCTGGATTGTTTCTGGGGACTGTggccttttttttctctctgactgAGGAGAAACAAAGTGACCAACTACCATGAAGTAATGAGATGTGACTTAAAGCTCTAGGCTGCTCTGTATGATTTACTGAtgtcagtagaatacagcccaGAGGACAAGCAACAACATTCTCCTGGTCTGGAAATTGTTTAAAGAGGACCGAGACAATAATCTGTGCTCCTCTGAGTCATCTCTCTAGCTAACAAGCGGATGTTATATAAGCAGAATGAACTATGTAGACAGAACAATGAAACCCTATCTGTCACTGACAATTTGCGTTAAATTGCCAACTTCACATCACAAACCAGGGTTTCCCGAACTCTGTCCTCGCGACCCTAaagggtgcacatttttgttttttgccctagcattacacagctgattcaaataatcaactaattatctagctttgataatttgaatcagctgtgtagtgttaaggAAAAATACTAAATGTGTTCCACTTGGGGTTCCGAGGACCAAATTTGGGAAACGCTGTCATAAACCATAACATCTCATTCACATAAACAGCAATACACATTGTACAGACAGCCAAGGCATCGACTTATATTTGTATGTATATTTCTTTTTTACTCTTAAAAATGCCTATCCTGACACTCACTATGCATCCTCCTTCATAACAAATGGAAATATGAATTAATGTACATCAGCAGGAGATTTTCAGGTTTATGAGATAATAACATCACATTTTTTTGTGGACTTTGGCGTCATGGTACTAACATTAAAAGAGCAATAGTTTTCCTACCCTTGTTTCACACAGATGATATTATTAGGAGAGGCTCAAAGTGACTAGGAATCTCCATCTATTCTCATTGTGTTTCTATTATTGTTGTTACACTACATATGCACTTCTTTCTCTAGTCTTGATCTATTGTTTGTGCTGTGTCAGTACCTATTGTCATTGCCAAACAAATAGATACATTTGGATACAGCACAAacggatctgggaccaggctactattCAGTATGACTGCAATAACCCTGCTCTCTGTCATGGCTACATTACTTGCACTGTGAGTGTGGGTGGGCGGAGAGACAGGGAACGTCTCTAAGCTGTGTTGACATGGTACATAACTCTCTCCCTCACCCATTCCAACAGGAAGAAGCAGGCTACAACATGGCACTGGAGTTATGAAAGGGCTACAGTATGAGATGGGAGGGAATACTTCTCATTAAATGTGTTCCATGGCCTTTTTTGTGATGGTGAGCTAGGcgcgagagagtgtgagagacgATGGACGAAAAGAGTGTGCGCACTAACTtttattgatgtgtgtgtgccaAACGCAATAAGAATCACATAAAAACAATCTGCTTGTGTGTCTTGGCACCATGTGAGGAAATGCATGAACCCAGACCTTTCAAGTACAGCATTGATAATTCACCATTAGAAACCAATAGATTTACAACACTACTGCGTGTATATGTCATTCTGCACACAGAGCAGGTATTCACGAAACAGCAATAAATGGATGACTTAAAAGCAAA

Function

NR:

description
integrin beta-5-like

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component

KEGG:

id description
K06588 ITGB5; integrin beta 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974695.1 True 4662 mRNA 0.49 15 56338028 56434926

Neighbor

gene id symbol gene type direction distance location
LOC110520256 rbm44 coding upstream 1958 56329311 ~ 56336070 (+)
LOC118936648 rbm44 coding upstream 8676 56325002 ~ 56329352 (+)
etv5a LOC106586388 coding upstream 17310 56303426 ~ 56320718 (+)
LOC110504343 LOC106586387 coding upstream 48842 56139812 ~ 56289186 (+)
LOC110505342 LOC106586366 coding upstream 247053 56087619 ~ 56090975 (+)
LOC110505355 NA coding downstream 4940 56439866 ~ 56440949 (+)
tnfaip6 tsg6 coding downstream 19078 56454004 ~ 56462796 (+)
rif1 LOC106586392 coding downstream 28462 56463388 ~ 56494844 (+)
LOC110520266 phs1 coding downstream 233207 56668133 ~ 56680567 (+)
adcy5 LOC106586396 coding downstream 248138 56683064 ~ 56818530 (+)
G275776 NA non-coding upstream 28365 56308307 ~ 56309663 (+)
G275673 NA non-coding upstream 42811 56292849 ~ 56295217 (+)
G275722 NA non-coding upstream 118172 56219643 ~ 56219856 (+)
G275720 NA non-coding upstream 119652 56217653 ~ 56218376 (+)
G275719 NA non-coding upstream 120485 56217318 ~ 56217543 (+)
G275860 NA non-coding downstream 12670 56447596 ~ 56447865 (+)
G275863 NA non-coding downstream 16951 56451877 ~ 56452654 (+)
G275870 NA non-coding downstream 41442 56476368 ~ 56477171 (+)
G275871 NA non-coding downstream 43001 56477927 ~ 56478418 (+)
G275875 LOC100194727 non-coding downstream 65286 56500212 ~ 56509613 (+)
G275553 LOC107595854 other upstream 421895 55915329 ~ 55916133 (+)
G275542 LOC106586374 other upstream 437285 55900194 ~ 55900743 (+)
LOC110520231 dbr1 other upstream 962502 55371759 ~ 55375526 (+)
G274592 NA other upstream 1462913 54874399 ~ 54875115 (+)
G273094 LOC106586310 other upstream 2496411 53841264 ~ 53841617 (+)
G277296 NA other downstream 829641 57264567 ~ 57264892 (+)
G277973 NA other downstream 1354808 57789734 ~ 57790332 (+)
G280315 NA other downstream 3617790 60052716 ~ 60054417 (+)
G281141 NA other downstream 3852462 60287388 ~ 60303967 (+)
G281591 LOC106586456 other downstream 4305313 60740239 ~ 60757350 (+)

Expression


Co-expression Network