tnfaip6 (tsg6)


Basic Information

Item Value
gene id tnfaip6
gene name tsg6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56454004 ~ 56462796 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597439.2
ATTTAAAAGGCCAGTCGCCAGATGAGCAGCGAGCACAGCGCGAGCGGTAGCTGCTAGCGAGAGGATATCAACCCGTTGCGCACAGCTCTGTTCTGTTCAGGAGGAGGATGCGCATCTTCACTGTCATCTGGGCCATCTGCTTCTTCTTGAAGGAAGTGCAAGCGTGGGGCTTCAGAAATGGAATATTTCATAACTCCATATGGTTGGAGCAAGCTGCTGGAGTCTACCACAGGGAATCGCGTAAAGGGAGATACCAGCTGACTTATAAGGAGGCCAAGACGGTGTGCAAATACGAAGGAGGAAATCTGGCCACTTACGATCAACTGGAGGCTGCTCGTCAAATAGGTTTTCACGTGTGTGCGGCTGGGTGGTATGACAAAGGTCGTGTAGGCTACCCTATCGTCAAAGCTGGTGCCAACTGTGGTTTTGGGAAGGTTGGTGTCATCGACTACGGGTACAGGCTGAACAAGAGTGAAAGATGGGACGTCTACTGCTACAACCCCAACTCGAAGGAGTGTGGAGGAACTCTGACAGACCAGCAGAAGATCATCCAGTCACCTGGTTACCCAGAGGAGTACCAAGATGAGCAGATCTGCTACTGGCACATCCGTGTACGCTATGGACATAGGATACGCCTGCATTTCCTGGAGTTCGACGTGGAGGAGGACACGTCCTGTCTAGCAGACTACCTGGAGATCTATGACAGCTATGACGACGTCTCTGGCTTTGCCGGGAGGTACTGTGGAGATTACTTACCAGATGACTTAATTAGCACAGggaatgtgatgacaCTAAAGTTCCTGTCCGATGCCTCTGTAGTGGCAGGAGGCTTCCAGCTGGAGTACATTGCTGTGAACTCTTCTCTTCACCACTTCCAGAATGACAGCAGCTACTACTTCACTTGACAAATTATTTAATAGATGTTTTTTATGTTAATGTTTCCTATTGTATTTATAATGTTGTCGTTTTTACTCATGTAATTGATGTGTGTATCCTTGTTGTCTTCAAGGGAAAGCAAATAAATGCTGTATTAAATGTATAACCTCACA

Function

symbol description
tsg6 tumor necrosis factor-inducible gene 6 protein

NR:

description
tumor necrosis factor-inducible gene 6 protein-like

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005540 hyaluronic acid binding molecular_function

KEGG:

id description
K19018 TNFAIP6, TSG6; tumor necrosis factor-inducible gene 6 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597439.2 True 1049 mRNA 0.48 6 56454004 56462796

Neighbor

gene id symbol gene type direction distance location
LOC110505355 NA coding upstream 13055 56439866 ~ 56440949 (+)
itgb5 LOC106586391 coding upstream 19078 56338028 ~ 56434926 (+)
LOC110520256 rbm44 coding upstream 117934 56329311 ~ 56336070 (+)
LOC118936648 rbm44 coding upstream 124652 56325002 ~ 56329352 (+)
etv5a LOC106586388 coding upstream 133286 56303426 ~ 56320718 (+)
rif1 LOC106586392 coding downstream 592 56463388 ~ 56494844 (+)
LOC110520266 phs1 coding downstream 205337 56668133 ~ 56680567 (+)
adcy5 LOC106586396 coding downstream 220268 56683064 ~ 56818530 (+)
sema5ba LOC106586418 coding downstream 454656 56917452 ~ 57105517 (+)
LOC110520274 NA coding downstream 758851 57220562 ~ 57230455 (+)
G275863 NA non-coding upstream 1350 56451877 ~ 56452654 (+)
G275860 NA non-coding upstream 6139 56447596 ~ 56447865 (+)
G275846 NA non-coding upstream 29088 56424013 ~ 56424916 (+)
G275776 NA non-coding upstream 144341 56308307 ~ 56309663 (+)
G275673 NA non-coding upstream 158787 56292849 ~ 56295217 (+)
G275870 NA non-coding downstream 13572 56476368 ~ 56477171 (+)
G275871 NA non-coding downstream 15131 56477927 ~ 56478418 (+)
G275875 LOC100194727 non-coding downstream 37416 56500212 ~ 56509613 (+)
G275881 NA non-coding downstream 58545 56521341 ~ 56523190 (+)
G275894 neb non-coding downstream 84001 56546797 ~ 56551723 (+)
G275553 LOC107595854 other upstream 537871 55915329 ~ 55916133 (+)
G275542 LOC106586374 other upstream 553261 55900194 ~ 55900743 (+)
LOC110520231 dbr1 other upstream 1078478 55371759 ~ 55375526 (+)
G274592 NA other upstream 1578889 54874399 ~ 54875115 (+)
G273094 LOC106586310 other upstream 2612387 53841264 ~ 53841617 (+)
G277296 NA other downstream 801771 57264567 ~ 57264892 (+)
G277973 NA other downstream 1326938 57789734 ~ 57790332 (+)
G280315 NA other downstream 3589920 60052716 ~ 60054417 (+)
G281141 NA other downstream 3824592 60287388 ~ 60303967 (+)
G281591 LOC106586456 other downstream 4277443 60740239 ~ 60757350 (+)

Expression


Co-expression Network