arl5a (arl5a)


Basic Information

Item Value
gene id arl5a
gene name arl5a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56589557 ~ 56600573 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597447.2
CCCTGCATGGACTAAACTGAAGACACTGTCTTATCAAATATGTGGCATTTTGTGAATGCTTGCAATTGCCTCACTTCAAAATATGACTTAAAGTGCCTATTGATGCAGTGCTACTGTGGGTAATAATTTTCTGATTCTCTCTGGAATCCATCCTCACTGGACCGACTGTGGAGAGAGTGCAGTTTAGAGTAGGCGTGCGTCAGTGTTGACGACCGCAATCCAGCGGACCAAGCAAGCCAGTTATCATTGTATTATCTAGAAATAAAGTGTAAACCGCGTCCTGTAATTCTATGTCGACCATAAAGGCCTTCGTACAAAGATGAAAACGTTGTCAAGAAGCGTTGACATTACTGGTTTATTTTTCACCGTCAAATATTGCCAAGTGTGATACTGACAGCAGCATTGCCTGGCTAGCGCATTAGCAACATCTTCAGGAATTCGCTATAGCCTAGCTAAATTAATTGGCCGTAGCTACTGGTAGTTGTCCAAAGGCTCCGCAACAGCCATGGGAATACTTTTCACCAAGCTATGGAGGCTTTTCAATCATCAAGAGCACAAGGTTATTATTGTGGGCCTGGACAATGCGGGGAAGACCACCATACTTTACCAGTTTTCTATGAATGAGGTGGTCCACACGTCTCCTACAATAGGCAGCAACGTGGAGGAGATAGTGGTGAACAACACGCACTTCCTGATGTGGGACATCGGAGGACAGGAGTCACTGAGATCCTCCTGGAACACGTACTACACTAACACAGAGTTTGTGATCGTAGTGGTGGacagcacagacagagagagaatctcTGTCACCAAAGAGGAGCTCTACAGAATGCTTGCACATGAAGACCTGAAGAAGGCGGGCCTGCTGATTTTTGCTAACAAACAGGATGTGAAAGGCTGTATGTCTGTGGCTGAGATCTCCCAGAGCCTGCAGCTCACCTCAGTCAAAGACCACCAGTGGCACATCCAAGCCTGCTGCGCCCTCACTGGAGAGGGGTTGTGCCAGGGCCTGGAGTGGATGATGTCACGACTGCGGGTTAGATGACCTTTGACGctgatcaacaacaacagtgTGATGTTCCTTTCTTCTCTCTACACCTTCAGTCCTGAGGGATTGGGTGGTTTACAGGCGGCTCTTTTCCTCTCCATGAGACTGACTTGACCCGGTTGGCCAGACTCCCTACCGGCCAGGATGTTGTTTTTCTGCTGCGTGTTTATTTATTTCTACAGAACACTGATCTGCTCTGACTGAGAACTGTGAACAACCAGAACTGTACCACTCTACCATTTCAGGATCCATTCTGGAAAGAAAAACTAAACAAAATACTCTATTTAATTTCTGAATCTGCACGCTTGGTTTTCATACTATAAGAAAAAGGAATGCTTGGGACAGCTCAGATTTAACAGGAGTCGTCTTTAGTTGTGTGTGAGTGGGCTTGCCTGCCCAGAGTGGCCTTGTTGCAGTATTGTCGGACGGCCTGAGGTGGTGGTATTGCCCTGTGTGTACAGTATTTACATtacatctgcatcccaaatgggataTATatatcagcaaaaaaagaaacattctctcactgtcaactgcatttattttcagcaaacttaacatgtgtaaatatttgtatgaacataacaagattcaacaactgagacataaactgaacaa

Function

symbol description
arl5a Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport; protein localization to Golgi membrane; and vesicle-mediated transport. Predicted to be active in trans-Golgi network. Orthologous to human ARL5A (ADP ribosylation factor like GTPase 5A).

NR:

description
ADP-ribosylation factor-like protein 5A

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07949 ARL5A; ADP-ribosylation factor-like protein 5A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597447.2 True 1666 mRNA 0.45 6 56589557 56600573

Neighbor

gene id symbol gene type direction distance location
LOC110520260 NA coding downstream 10907 56495151 ~ 56578650 (-)
LOC110520254 LOC106586385 coding downstream 540412 56047811 ~ 56049145 (-)
LOC110520253 LOC106586384 coding downstream 547859 56040760 ~ 56041698 (-)
LOC118936311 LOC106586361 coding downstream 571185 56017260 ~ 56018372 (-)
LOC110520252 LOC106586360 coding downstream 584772 56003832 ~ 56004785 (-)
LOC110520263 LOC106586393 coding upstream 231 56600804 ~ 56650953 (-)
LOC110520265 LOC106586394 coding upstream 51796 56652369 ~ 56667591 (-)
LOC110520269 LOC106586397 coding upstream 231825 56832398 ~ 56844653 (-)
LOC110520270 LOC106586417 coding upstream 266636 56867209 ~ 56917413 (-)
slc49a4 dirc2 coding upstream 542862 57143435 ~ 57206958 (-)
G276844 LOC106586392 non-coding downstream 103885 56484375 ~ 56485672 (-)
G276843 LOC106586392 non-coding downstream 105842 56483429 ~ 56483715 (-)
G276840 NA non-coding downstream 109075 56480259 ~ 56480482 (-)
G276835 NA non-coding downstream 119846 56468912 ~ 56469711 (-)
G276829 tsg6 non-coding downstream 127761 56453003 ~ 56461796 (-)
G276907 NA non-coding upstream 70921 56671494 ~ 56672592 (-)
G276969 NA non-coding upstream 218072 56818645 ~ 56819892 (-)
G277110 NA non-coding upstream 367463 56968036 ~ 57046855 (-)
G277168 NA non-coding upstream 453412 57053985 ~ 57054282 (-)
G275250 NA other downstream 1178070 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 1470345 55068639 ~ 55122013 (-)
G274344 LOC106586294 other downstream 1906752 54679918 ~ 54682805 (-)
G272713 LOC106586324 other downstream 3338473 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 3880741 52693956 ~ 52708816 (-)
si:dkey-91i10.3 LOC106586420 other upstream 670209 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 802411 57402984 ~ 57403575 (-)
G277749 LOC106586429 other upstream 983813 57584386 ~ 57589183 (-)
G284018 NA other upstream 6114002 62714575 ~ 62715177 (-)
G286522 NA other upstream 8368976 64969549 ~ 64970755 (-)

Expression


Co-expression Network