LOC110520265 (LOC106586394)


Basic Information

Item Value
gene id LOC110520265
gene name LOC106586394
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56652369 ~ 56667591 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597448.2
ATTTTTGCAGCCACCTAAGTTTACGGAAGAGCAACTGGTATAAGTGTACAGAGTTTGATGGATGAGGAagggatttaaaaatatatatattcttgaAAAAAATAGTATACGTTTTCTTTCTCAACAACGTCGGTTGGTTTAAAGGGATAAATATGCCTTTATTTGCGCAGAATCCATTCGACCAAGATGTTGAGAAAGCAACCAATGAAACCAATACAGTGGAGGACTGGGCCCTGATCATGGATATCTGTGACAGGGTTGGACATACACCCAATGGAGCTAAGGACTGCCTGAGGTCTGTGATGAAGAGAGTAAACCACAAGGTCCCGCACGTTGCCATGCAAGCCCTCACCTTGCTGGCTGCCTGTGTCAATAACAGTGGAAGAATCTTTCACTTAGAAATCTGCTCACGGGACTTTGCCACTGAAGTCCGAGCTATATTGAGCAGGGCCCACCCCAAGGTGTGTGATAAGCTGAAGGGGATGATGGTGGAGTGGTGTGACGAGTTCCAAAAAGATCCACAGCTCAGTCTGATCAGTGCCACCATTAAGTctctgagagaggagggggtcgCCTTCCCGTCTTCTGGCTCACAGGGGTCCAGCCTAAAGGTCACCACACCTGCTGTTAGTAAACCATCTGACGATGACGACCTTGCCAAAGCAATCGAGCTGTCCCTGCAGGAACAGAAGCAGCATGCTGAGACACGGCCCCTCACCGTGTCCGCCGACCCCCCCTTCAACACCAACGGAGGAGGGGGTAGCAAGGACTCTAGGAAGGTGCGGGCGCTCTACGACTTTGAGGCGGCCGAAGACAACGAGCTCACTTTCAAGACGGGGGAGCTCATTCTAGTCCTGGACGACAGTGATTCAAACTGGTGGAAAGGAGAGAACCACAGAGGAGTAGGTCTCTTCCCATCCAACTTTGTCACGACCAACCTCAATGCTGAGCCTGAACTAGTAACGTATGTGGAGAAGACACCAGCCCCGGAGGAGCCCAAAATAGAAGCCATAGTGGAGTCTGAGCCTGTCTTTATAGATGAGgagaagatggatggagcgcTGTATCTGCTCCAGAATACTGACCCTGCTGACGCAGCACCTGACTGCCCTGAGCTGGTCCAACTGGAGGGTGCTTGTGAGCAGATGAATCCAATGATTGATGACAAGCTGGAAGACATTGACAGGCAACACTCTGAGCTGTCTGAGCTGAATGTGAAGGTGCTGGAGGCCTTGGAGCTCTATAACAAACTGATGAACGAGGCACCATTCTACACAGCCTACTCCAAACTGCAGTCCCAGCAGCAGCCCCACTACACACCTGCCTCTCAACTCCCCATGCAGggaTACCCAGGTCAGGCTGGTGGTTCCTACATGCCTCCAGGGATGCCCCAGGGCCCCCCAGGCCAGCAGGCCTACATGGGCTCTGACCAACCCGGACCACTCCAGTCGCTCCCCCCTAACGTCACATCTCCCAATGGTCAGCCAGCACAGCTTCCTTACAGTTCTCCATATGCACCTGCCGGTTACCCACCACAGATGGGTGTAGCCCCACAGATGGACATGTCGGCCTATCAGAACTCCAACCTGCCACCAGCCTCCTATCAAATGGCTGCTTCATCGCACCAGGCTCCACAGCAGCAACAGGCCTACTATCAGCAGCCTCTCCTGTAAAGTGCAATACAACTAAGGCTGTCTGAGTGAGCAGCAGCATATCCCCACCAACAGACACAGTACAACAATACACAAGTGTGTGTGATTATCCTCCCCCTATTTTGACCTTTATGATAAAATGCCctttacgtagtgcactactgctctggtcaaaagtagtgcactacgtagggaacagggtaccatttgggacactacCTAGATGATTGTAACAAAGGTCAGTGGCTGTGTGAGAGGGGGGAGACTACATGCCAACCTACCAGCCACCACAGCCCATTTTGAAGGGATGAACGTTTTAAGTAGAGAGTGTAAAATAAGTAATTTTCCTTAACCTGGTTTGCCTCAAAAACATTTAAGTGGGCAGCTGTCCAGCTGATCATTTCCAAACTGCATCAtagatggtatgtgtgtgtgtttgtccctgttcagttttttattttatatttttaaatgttgatTTCTCTTCACCCTCTGGTCTATCAGGAAATCAGTCCATGGCTGGCCAGGACAAGTCAATtcaaaatggaattgaccccgaCCAGGACTTGTTTTTTTCTATCTAACAGCATAATCCACTTTAGTTTACCCTTCTCGGGGCCAAAGGTTATGAAGTGCTACAGCTATCTGTATTTCTTTCTGTGGTTTAGTCACTACTATAATACCGCAATATAGTTAGATTAATTTCCCATACACTGCCTGCCTTGCAACACCCTTTGGGTGTTTAATACATTATAGGAGTAAAGCAAAAtgtttaaacatttttatttgtgtGCTACTTCAAGGTGAATTTATCAATTTAACTTGGCGTTAAATAGATTTTGAATTGTGACCATGAAGCCTTTCCAAATTACTGCAGTTTTAGGTTCAATATACAATTTTATACACATTACTTTTTTTGTAATGCAAATGTGATCTAGCCTGGTGCctgtctgtttctgctctcttgctAACTCATGGAATTTgtcatgtttggcttgacaataaCAATACTGCAGTTGGAAAGATGGTGCAaaaagatctgggaccaggctaaataACAACATGGCTTTTGGTTAACACAATATTCATGTGCCAAGGCTCTAGGCAACTTCCTGGAGGCCCCACATACAGTGATTAACAAGATGTAATTGCAAGCTATAAGTGGTTGATTGGGAAATGAGCCTAGTCCTATCTATTTTTCTATGGTCTTTCTTAATTCAGTCTTTTGttgaaaaggcttttgacaaTAGACGTTATTAATAGATGTCTGTGATTTATTAAATTGATATCTGTCTGCTTTTTATGTTTCTGGGCTGTGAGCGGTCACGTTTTCATAGAAATCTATTTCCCGAACATATTTTCATTTATGCATTATCTTTGCATTGGTATGGCTGTCTGCTCTGCAGTTGGACCTTTAATTTTAATGTTGTAATTCTATTTGTATTATAtttgttatattatatattttccCTGGATTATATCCATATGATCAGATAATATTTTATGGTTTCTAGATGTAAGATATACTTTCTGCTTTTAATGCTTTTGTTTTTACTTTATTTGTGTCTTATCCAAAATGCAAGCAGAACAAATAGCTACCGTGACCAACAGCTAGAAATGGGTATTTACTGATAAAGGTGTGGATTGTACAAAGACTAGTAGCTAGAGAACTGTTAGACCTAAAATGTTCATCTGAACTTAATGAATCTGTTGAGTGAGACCGAGGACCAGGATTCTGTTTTTGTTTAATCTGGATCAAGTCAACTCTGACTCATAAGAACTGTCTATGCTTTATTTGTCTTTTAACTTGCCTCTTAAAAGGTGTTGTGTACATTACATGTAAAATATCTTCTGGCATTGTGGGTATTGCACTTTAACCTTGTTAACATTTTATTTACCACTGGATGCCTTGTTTTTCTTTAGGAATAAGGAATtgacatctgtatatctagaatTCTTTATATTTAAAACGTTTCCAGGGAATGTTCCGATTCAGTACTACCGACATAATAACCGACTATGTTTTGTAACATCAAGGTTTCTCTTTATCTTGTGTTATTGTAAAAAATCATTTCGAAACACAGTCGACTAATATTCTTTCAAATAAAATGTACCTGTGTTCAAGGCTCTCT

Function

NR:

description
signal transducing adapter molecule 2-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process

KEGG:

id description
K04705 STAM; signal transducing adaptor molecule

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597448.2 True 3784 mRNA 0.43 14 56652369 56667591

Neighbor

gene id symbol gene type direction distance location
LOC110520263 LOC106586393 coding downstream 1416 56600804 ~ 56650953 (-)
arl5a arl5a coding downstream 51796 56589557 ~ 56600573 (-)
LOC110520260 NA coding downstream 73719 56495151 ~ 56578650 (-)
LOC110520254 LOC106586385 coding downstream 603224 56047811 ~ 56049145 (-)
LOC110520253 LOC106586384 coding downstream 610671 56040760 ~ 56041698 (-)
LOC110520269 LOC106586397 coding upstream 164807 56832398 ~ 56844653 (-)
LOC110520270 LOC106586417 coding upstream 199618 56867209 ~ 56917413 (-)
slc49a4 dirc2 coding upstream 475844 57143435 ~ 57206958 (-)
LOC110520276 LOC106586419 coding upstream 565042 57232633 ~ 57260239 (-)
si:dkey-91i10.3 LOC106586420 coding upstream 604882 57270782 ~ 57297762 (-)
G276844 LOC106586392 non-coding downstream 166697 56484375 ~ 56485672 (-)
G276843 LOC106586392 non-coding downstream 168654 56483429 ~ 56483715 (-)
G276840 NA non-coding downstream 171887 56480259 ~ 56480482 (-)
G276835 NA non-coding downstream 182658 56468912 ~ 56469711 (-)
G276829 tsg6 non-coding downstream 190573 56453003 ~ 56461796 (-)
G276907 NA non-coding upstream 3903 56671494 ~ 56672592 (-)
G276969 NA non-coding upstream 151054 56818645 ~ 56819892 (-)
G277110 NA non-coding upstream 300445 56968036 ~ 57046855 (-)
G277168 NA non-coding upstream 386394 57053985 ~ 57054282 (-)
G275250 NA other downstream 1240882 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 1533157 55068639 ~ 55122013 (-)
G274344 LOC106586294 other downstream 1969564 54679918 ~ 54682805 (-)
G272713 LOC106586324 other downstream 3401285 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 3943553 52693956 ~ 52708816 (-)
G277673 LOC106586423 other upstream 735393 57402984 ~ 57403575 (-)
G277749 LOC106586429 other upstream 916795 57584386 ~ 57589183 (-)
G284018 NA other upstream 6046984 62714575 ~ 62715177 (-)
G286522 NA other upstream 8301958 64969549 ~ 64970755 (-)

Expression


Co-expression Network